rna2225, rna2225 (mRNA) Nannochloropsis gaditana

Overview
Namerna2225
Unique Namerna2225
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length885
Alignment locationCM002458.1:1206526..1207899 +

Link to JBrowse

Properties
Property NameValue
ProductRibosomal protein L23/L15e core domain protein
Orig transcript idgnl|cribi|Naga_100710g2.7610.mrna
Orig protein idgnl|cribi|Naga_100710g2.7610
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1206526..1207899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100710g2gene2128Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2225rna2225-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28456.1cds2217Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2225 ID=rna2225|Name=rna2225|organism=Nannochloropsis gaditana|type=mRNA|length=885bp
ATGCAAGTTGCCTGCCATCCACGCTTGCTCGCGTGCATCTCTAGCCGCAC
AGACCTCCTCTATCGTCAACAACATACGGCACGACAGTGGGGTATAACCA
TGGTATCAGCGCTTCTGGCCTCTCGCCGTTTGGTCGTAGGCTGCAATATT
AGACAAGCTGCCAATGCTCTGCTTGTGAACGCGTATGCTAGCAGCAACGC
CGCCAAAGCACAAGCTAGTCGCACGCTCTCAACCGCCTTTCAACGCACAA
AGCCCCACTTGAACATTGGCACCATCGGACACGTGGATCATGGAAAAACC
ACGTTGACGGCTGCGATTACCAAGGTGTTGGCCGAGGCTGGTGGCGCAGA
GTTCCGCTCGTACGATGACATTGACAAGGCCCCAGAGGAGCGACAGCGCA
AAATCACCATCAATACATCACACGTGGAGTACGAGACGGGCAAACGCCAC
TACGCTCACGTCGATTGTCCTGGCCATGCGGATTACGTGAAGAATATGAT
CACGGGGGCAGCCCAGATGGATGGCGGCATTTTGGTCGTCTCCGCCACGG
ACGGGGCTATGCCTCAGACCCGAGAACACATCCTTCTGGCTAAGCAAGTG
GGGATCCCGCGCCTGGTGGTCTTCATGAACAAGTGCGACATGGTCAAGGA
CGAGGAGCTCCTGGAGTTGGTGGAGATGGAAGTGCGTGAGCTCTTGGACT
TTTACGAGTTTCCCGGCGACGATACGCCCATCATCCGAGGGTCCGCTCTG
GCAGCCGTCGAGGGCACCGACGACAATTTGGGGAAGAACGCTATCTTGAA
GCTGATGGACGCGGTGGACGACAATATCCCAACTCCTCCCCGCGAATTAG
ACAAGCCCTTTTTAATGCCCGTGGAGGACGTGTAG
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protein sequence of rna2225

>rna2225-protein ID=rna2225-protein|Name=rna2225|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMH
KGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLV
VKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANKE
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mRNA from alignment at CM002458.1:1206526..1207899+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2225 ID=rna2225|Name=rna2225|organism=Nannochloropsis gaditana|type=mRNA|length=1374bp|location=Sequence derived from alignment at CM002458.1:1206526..1207899+ (Nannochloropsis gaditana)
GGACGTCTCGCTATTCCCCTTTGATTTCTCGTGTGAGTGGCAAGTCGGGT
GTGATGGTACGCATGAAGCGCGTGAATTTGTCGTGAACATTGTGCGATCG
ATCACGGccattcgcctcctccggttctctctgcttctccgtctcctccg
tcccttctaTCCAGCCACTCACGTTCACGGTACAATGTTTTTTCCTCAAC
ACGCGTCTTCACAGCAATCATGGCGGACAAGGGACCTGTGACCATCCGTT
CCCGAAAGTTTATTCGCAATGCGCTTCTAGCCAGACGGCAAATGGTAGGT
TTTCGAAGGCGTACGGgcacccctctctcctcccctccctctacccctcC
CATGTCTGCTGTGAAATACGTACATTTTTTAAATTTATTTGAACTTCTGT
TATCGTAGATCATTGATGTGCTGCACCCGGGGCGTGCTAATGTCCCCAAG
ACTGAGCTGCAAGAAATCATTTCAGGGGTAAGGACATaactttctttcct
gtccttcgtccctccattcccctgTGCTTGATGCTTGAAATACGCTTGGT
AGAGAGACAAGCACGATGGTGTTGTTTGAATCAATTGTGATGACTGGTAG
GTATGCACGAAGTTGCAAGAAGCCTGCTTTGGGATGCCCTTCGGCATATG
AAGCACTCCCTCTCGGCGTCTTCCGACTTTGCGGCGGCCTTCGTGAGTGA
ATCCTCTCTCGTTCTTACGAAGCAATTTCAATCTTTGATAACGTATCTCA
GATGCACAAGGGTGCCAAGCCCGAGACCACATTCCTGTTCGGTTTCCGTA
CTGCATTCGGTGGGGGGAAATCCACGGGCTTCGCCCTGATTTACGACACA
TTGGAAGATGCCAAGAAATTCGAACCGAAACATCGGTTGGTTCGTGCAGG
GTTggtggtgaagaaggagacgtccCGAAAGCAGatcaaggaggcgaaga
aTCGGGCGAAGAAAATTCGGGGAACAGGCCGACGGTTGGCAAAGCacaag
gcgaagaaggccaaCAAGGAGTAGAgccctggagggagggagggagggag
ggagggagggaagaagggagagggagagggagagagggaggaggaggaca
gggaggaagacgaaacGGGGCGTGGCCTTTGTGGAGACCTCTAGGAGTGG
AGAAACATTTTGGGCATCAGACACTCGCACGATTGCTTGGTGTAATGGAT
GTTTCTGTCTTGGCACGAATGCTTGGTGTAATGGATGTTTCTGTCTTGGC
ATTGCCACTCCTATCTCTGCGTCCGTTTGGGTCTTAAGCCCGGTGGTGCA
AGGGCGACGGGGATGTACGGGCCTAATGGAGGCTTTAAAAGGAAGAAACG
AACATGCAAGCATGTTGTGCGACG
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Coding sequence (CDS) from alignment at CM002458.1:1206526..1207899+

>rna2225 ID=rna2225|Name=rna2225|organism=Nannochloropsis gaditana|type=CDS|length=1251bp|location=Sequence derived from alignment at CM002458.1:1206526..1207899+ (Nannochloropsis gaditana)
ATGGCGGACAAGGGACCTGTGACCATCCGTTCCCGAAAGTTTATTCGCAA
TGCGCTTCTAGCCAGACGGCAAATGATCATTGATGTGCTGCACCCGGGGC
GTGCTAATGTCCCCAAGACTGAGCTGCAAGAAATCATTTCAGGGATGCAC
AAGGGTGCCAAGCCCGAGACCACATTCCTGTTCGGTTTCCGTACTGCATT
CGGTGGGGGGAAATCCACGGGCTTCGCCCTGATTTACGACACATTGGAAG
ATGCCAAGAAATTCGAACCGAAACATCGGTTGGTTCGTGCAGGGTTggtg
gtgaagaaggagacgtccCGAAAGCAGatcaaggaggcgaagaaTCGGGC
GAAGAAAATTCGGGGAACAGGCCGACGGTTGGCAAAGCacaaggcgaaga
aggccaaCAAGGAGTAGATGGCGGACAAGGGACCTGTGACCATCCGTTCC
CGAAAGTTTATTCGCAATGCGCTTCTAGCCAGACGGCAAATGATCATTGA
TGTGCTGCACCCGGGGCGTGCTAATGTCCCCAAGACTGAGCTGCAAGAAA
TCATTTCAGGGATGCACAAGGGTGCCAAGCCCGAGACCACATTCCTGTTC
GGTTTCCGTACTGCATTCGGTGGGGGGAAATCCACGGGCTTCGCCCTGAT
TTACGACACATTGGAAGATGCCAAGAAATTCGAACCGAAACATCGGTTGG
TTCGTGCAGGGTTggtggtgaagaaggagacgtccCGAAAGCAGatcaag
gaggcgaagaaTCGGGCGAAGAAAATTCGGGGAACAGGCCGACGGTTGGC
AAAGCacaaggcgaagaaggccaaCAAGGAGTAGATGGCGGACAAGGGAC
CTGTGACCATCCGTTCCCGAAAGTTTATTCGCAATGCGCTTCTAGCCAGA
CGGCAAATGATCATTGATGTGCTGCACCCGGGGCGTGCTAATGTCCCCAA
GACTGAGCTGCAAGAAATCATTTCAGGGATGCACAAGGGTGCCAAGCCCG
AGACCACATTCCTGTTCGGTTTCCGTACTGCATTCGGTGGGGGGAAATCC
ACGGGCTTCGCCCTGATTTACGACACATTGGAAGATGCCAAGAAATTCGA
ACCGAAACATCGGTTGGTTCGTGCAGGGTTggtggtgaagaaggagacgt
ccCGAAAGCAGatcaaggaggcgaagaaTCGGGCGAAGAAAATTCGGGGA
ACAGGCCGACGGTTGGCAAAGCacaaggcgaagaaggccaaCAAGGAGTA
G
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Synonyms
Publications