EWM28456.1, cds2217 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|585110860|gb|EWM28456.1| (Ribosomal protein L23/L15e core domain protein [Nannochloropsis gaditana]) HSP 1 Score: 276.174 bits (705), Expect = 5.438e-94 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 Query: 1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANKE 138 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANKE Sbjct: 1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANKE 138
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|1173928019|gb|OQR81746.1| (40S ribosomal protein S24 [Thraustotheca clavata]) HSP 1 Score: 218.779 bits (556), Expect = 2.913e-71 Identity = 104/137 (75.91%), Postives = 120/137 (87.59%), Query Frame = 0 Query: 1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137 M+DK PVT+R+RKF+RNALLARRQM++DVLHPGRANVPK ELQE I+ M+K A T FL+GFRTAFGGGKS+GF LIYDT+ DAKKFEPK+RL+R GL K ETSRKQIKE+KNRAKKIRG GRR+A+HKA KANK Sbjct: 1 MSDKAPVTVRTRKFLRNALLARRQMLVDVLHPGRANVPKAELQEKIAKMYKIADTNTVFLYGFRTAFGGGKSSGFCLIYDTVNDAKKFEPKYRLIRQGLKEKVETSRKQIKESKNRAKKIRGVGRRIARHKAAKANK 137
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|669157574|ref|XP_008614349.1| (30S ribosomal protein S24e [Saprolegnia diclina VS20] >gi|813129394|ref|XP_012197589.1| hypothetical protein SPRG_03622 [Saprolegnia parasitica CBS 223.65] >gi|530734166|gb|EQC32408.1| 30S ribosomal protein S24e [Saprolegnia diclina VS20] >gi|641537860|gb|KDO31704.1| hypothetical protein SPRG_03622 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 216.083 bits (549), Expect = 3.398e-70 Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = 0 Query: 1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137 M+DK PVT+R+RKF+RNALLARRQM++DVLHPGRANVPK ELQE I+ M+K A T FL+GFRTAFGGGKS+GF LIYDT+ DAKKFEPK+RL+R GL K ETSRKQIKE+KNR KK+RG GRR+A+HKA KANK Sbjct: 1 MSDKAPVTVRTRKFLRNALLARRQMLVDVLHPGRANVPKAELQEKIAKMYKIADTNTVFLYGFRTAFGGGKSSGFCLIYDTVNDAKKFEPKYRLIRQGLKDKVETSRKQIKESKNRGKKVRGVGRRIARHKAAKANK 137
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|1173950314|gb|OQR98287.1| (40S ribosomal protein S24 [Achlya hypogyna]) HSP 1 Score: 216.083 bits (549), Expect = 3.875e-70 Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = 0 Query: 1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137 M+DK PVT+R+RKF+RNALLARRQM++DVLHPGRANVPK ELQE I+ M+K A T FL+GFRTAFGGGKS+GF LIYD++ DAKKFEPK+RL+R GL K ETSRKQIKEAKNR KK+RG GRR+A+HKA KANK Sbjct: 1 MSDKAPVTVRTRKFLRNALLARRQMLVDVLHPGRANVPKAELQEKIAKMYKIADTNTVFLYGFRTAFGGGKSSGFCLIYDSVNDAKKFEPKYRLIRQGLKDKVETSRKQIKEAKNRGKKVRGVGRRIARHKAAKANK 137
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|698790888|ref|XP_009828476.1| (40S ribosomal protein [Aphanomyces astaci] >gi|574116255|gb|ETV81739.1| 40S ribosomal protein [Aphanomyces astaci]) HSP 1 Score: 214.157 bits (544), Expect = 2.075e-69 Identity = 101/137 (73.72%), Postives = 118/137 (86.13%), Query Frame = 0 Query: 1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137 M+DK PVT+R+RKF+RN LLARRQM++DVLHPGR NVPK ELQE ++ M+K A T FL+GFRTAFGGGKS+GFALIYDT+ DAKKFEPK+RLVR GL K E SRKQIKE+KNRAKK+RG GRR+A+HKA KANK Sbjct: 1 MSDKAPVTVRTRKFLRNTLLARRQMLVDVLHPGRPNVPKAELQEKLAKMYKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKVRGVGRRIARHKANKANK 137
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|673042381|ref|XP_008875151.1| (40S ribosomal protein [Aphanomyces invadans] >gi|574469344|gb|ETV96359.1| 40S ribosomal protein [Aphanomyces invadans]) HSP 1 Score: 207.608 bits (527), Expect = 8.082e-67 Identity = 99/133 (74.44%), Postives = 114/133 (85.71%), Query Frame = 0 Query: 5 GPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137 PVT+R+RKF+RN LLARRQM++DVLHPGR NVPK ELQE ++ M+K A T FL+GFRTAFGGGKS+GFALIYDT+ DAKKFEPK+RLVR GL K E SRKQIKE+KNRAKKIRG GRR+A+HKA KANK Sbjct: 3 APVTVRTRKFLRNTLLARRQMLVDVLHPGRPNVPKAELQEKLAKMYKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKIRGVGRRIARHKANKANK 135
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|635359865|emb|CCI50507.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 201.83 bits (512), Expect = 1.382e-64 Identity = 95/137 (69.34%), Postives = 114/137 (83.21%), Query Frame = 0 Query: 1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137 MA+KGPVT+R+RKF+RN LLAR QM+++V+HPGRANVPK ELQE + M+K T L+GFRT FGGGKSTGF LIYD++ DAK+FEPK+RL+R GL K E+SRKQIKEAKNR KKIRG GRR+A+HKA KANK Sbjct: 1 MAEKGPVTVRTRKFLRNTLLARVQMVVEVIHPGRANVPKAELQEKVGKMYKVKDTNTVVLYGFRTQFGGGKSTGFGLIYDSVNDAKRFEPKYRLIRQGLAEKVESSRKQIKEAKNRKKKIRGVGRRIARHKAAKANK 137
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|325188695|emb|CCA23225.1| (40S ribosomal protein S24 putative [Albugo laibachii Nc14]) HSP 1 Score: 197.978 bits (502), Expect = 5.434e-63 Identity = 94/137 (68.61%), Postives = 113/137 (82.48%), Query Frame = 0 Query: 1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137 MA+KGPVT+R+RKF+RN LLAR QM+++V+HPGRANV K ELQE + M+K T L+GFRT FGGGKSTGF LIYD++ DAK+FEPK+RL+R GL K E+SRKQIKEAKNR KKIRG GRR+A+HKA KANK Sbjct: 1 MAEKGPVTVRTRKFLRNPLLARGQMVVEVIHPGRANVSKAELQEKVGKMYKVKDTNTVVLYGFRTQFGGGKSTGFGLIYDSVNDAKRFEPKYRLIRQGLAEKVESSRKQIKEAKNRKKKIRGVGRRIARHKAAKANK 137
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|675193207|ref|XP_008905488.1| (hypothetical protein PPTG_11004 [Phytophthora parasitica INRA-310] >gi|566024127|gb|ETI47038.1| hypothetical protein F443_08650 [Phytophthora parasitica P1569] >gi|567961424|gb|ETK86966.1| hypothetical protein L915_08484 [Phytophthora parasitica] >gi|567990146|gb|ETL40380.1| hypothetical protein L916_08413 [Phytophthora parasitica] >gi|568019386|gb|ETL93534.1| hypothetical protein L917_08311 [Phytophthora parasitica] >gi|568049827|gb|ETM46793.1| hypothetical protein L914_08362 [Phytophthora parasitica] >gi|568094145|gb|ETN08927.1| hypothetical protein PPTG_11004 [Phytophthora parasitica INRA-310] >gi|570327814|gb|ETO75762.1| hypothetical protein F444_08706 [Phytophthora parasitica P1976] >gi|570951572|gb|ETP16829.1| hypothetical protein F441_08627 [Phytophthora parasitica CJ01A1] >gi|570985668|gb|ETP44886.1| hypothetical protein F442_08582 [Phytophthora parasitica P10297] >gi|970649880|gb|KUF89043.1| 40S ribosomal protein S24 [Phytophthora nicotianae] >gi|970664457|gb|KUG01359.1| 40S ribosomal protein S24 [Phytophthora nicotianae]) HSP 1 Score: 189.504 bits (480), Expect = 1.116e-59 Identity = 98/137 (71.53%), Postives = 118/137 (86.13%), Query Frame = 0 Query: 1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137 MADK PVT+R+RKF+RN+LLARRQM+++V+HPGR NVPK ELQE I+ M+K T FL+GFRT FGGGKS+GF L+YDT+ DAK+FEPK+RL+R GLV K ETSRKQIKEAKNRAKK+RG GRR+A+HKA KANK Sbjct: 1 MADKVPVTVRTRKFLRNSLLARRQMVVEVIHPGRPNVPKAELQEKIAKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRAKKVRGVGRRIARHKAAKANK 137
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|695393827|ref|XP_009520718.1| (hypothetical protein PHYSODRAFT_285079 [Phytophthora sojae] >gi|348685615|gb|EGZ25430.1| hypothetical protein PHYSODRAFT_285079 [Phytophthora sojae]) HSP 1 Score: 189.119 bits (479), Expect = 2.039e-59 Identity = 98/137 (71.53%), Postives = 117/137 (85.40%), Query Frame = 0 Query: 1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137 MADK PVT+R+RKF+RN LLARRQM+++V+HPGRANVPK ELQE I+ M+K T FL+GFRT FGGGKS+GF L+YDT+ DAK+FEPK+RL+R GLV K ETSRKQIKEAKNR KK+RG GRR+A+HKA KANK Sbjct: 1 MADKVPVTVRTRKFLRNTLLARRQMVVEVIHPGRANVPKAELQEKIAKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRGKKVRGVGRRIARHKAAKANK 137 The following BLAST results are available for this feature:
BLAST of EWM28456.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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