EWM28456.1, cds2217 (CDS) Nannochloropsis gaditana

Overview
NameEWM28456.1
Unique Namecds2217
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1206745..1206819 +
Alignment locationCM002458.1:1206934..1207002 +
Alignment locationCM002458.1:1207277..1207549 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28456.1
ProductRibosomal protein L23/L15e core domain protein
Orig transcript idgnl|cribi|Naga_100710g2.7610.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1206745..1206819 +
CM002458.1supercontigCM002458.1:1206934..1207002 +
CM002458.1supercontigCM002458.1:1207277..1207549 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR012678Ribosomal_L23/L15e_core_dom
IPR018098Ribosomal_S24e_CS
IPR001976Ribosomal_S24e
IPR012677Nucleotide-bd_a/b_plait
Homology
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|585110860|gb|EWM28456.1| (Ribosomal protein L23/L15e core domain protein [Nannochloropsis gaditana])

HSP 1 Score: 276.174 bits (705), Expect = 5.438e-94
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANKE 138
            MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANKE
Sbjct:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANKE 138          
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|1173928019|gb|OQR81746.1| (40S ribosomal protein S24 [Thraustotheca clavata])

HSP 1 Score: 218.779 bits (556), Expect = 2.913e-71
Identity = 104/137 (75.91%), Postives = 120/137 (87.59%), Query Frame = 0
Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
            M+DK PVT+R+RKF+RNALLARRQM++DVLHPGRANVPK ELQE I+ M+K A   T FL+GFRTAFGGGKS+GF LIYDT+ DAKKFEPK+RL+R GL  K ETSRKQIKE+KNRAKKIRG GRR+A+HKA KANK
Sbjct:    1 MSDKAPVTVRTRKFLRNALLARRQMLVDVLHPGRANVPKAELQEKIAKMYKIADTNTVFLYGFRTAFGGGKSSGFCLIYDTVNDAKKFEPKYRLIRQGLKEKVETSRKQIKESKNRAKKIRGVGRRIARHKAAKANK 137          
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|669157574|ref|XP_008614349.1| (30S ribosomal protein S24e [Saprolegnia diclina VS20] >gi|813129394|ref|XP_012197589.1| hypothetical protein SPRG_03622 [Saprolegnia parasitica CBS 223.65] >gi|530734166|gb|EQC32408.1| 30S ribosomal protein S24e [Saprolegnia diclina VS20] >gi|641537860|gb|KDO31704.1| hypothetical protein SPRG_03622 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 216.083 bits (549), Expect = 3.398e-70
Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = 0
Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
            M+DK PVT+R+RKF+RNALLARRQM++DVLHPGRANVPK ELQE I+ M+K A   T FL+GFRTAFGGGKS+GF LIYDT+ DAKKFEPK+RL+R GL  K ETSRKQIKE+KNR KK+RG GRR+A+HKA KANK
Sbjct:    1 MSDKAPVTVRTRKFLRNALLARRQMLVDVLHPGRANVPKAELQEKIAKMYKIADTNTVFLYGFRTAFGGGKSSGFCLIYDTVNDAKKFEPKYRLIRQGLKDKVETSRKQIKESKNRGKKVRGVGRRIARHKAAKANK 137          
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|1173950314|gb|OQR98287.1| (40S ribosomal protein S24 [Achlya hypogyna])

HSP 1 Score: 216.083 bits (549), Expect = 3.875e-70
Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = 0
Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
            M+DK PVT+R+RKF+RNALLARRQM++DVLHPGRANVPK ELQE I+ M+K A   T FL+GFRTAFGGGKS+GF LIYD++ DAKKFEPK+RL+R GL  K ETSRKQIKEAKNR KK+RG GRR+A+HKA KANK
Sbjct:    1 MSDKAPVTVRTRKFLRNALLARRQMLVDVLHPGRANVPKAELQEKIAKMYKIADTNTVFLYGFRTAFGGGKSSGFCLIYDSVNDAKKFEPKYRLIRQGLKDKVETSRKQIKEAKNRGKKVRGVGRRIARHKAAKANK 137          
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|698790888|ref|XP_009828476.1| (40S ribosomal protein [Aphanomyces astaci] >gi|574116255|gb|ETV81739.1| 40S ribosomal protein [Aphanomyces astaci])

HSP 1 Score: 214.157 bits (544), Expect = 2.075e-69
Identity = 101/137 (73.72%), Postives = 118/137 (86.13%), Query Frame = 0
Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
            M+DK PVT+R+RKF+RN LLARRQM++DVLHPGR NVPK ELQE ++ M+K A   T FL+GFRTAFGGGKS+GFALIYDT+ DAKKFEPK+RLVR GL  K E SRKQIKE+KNRAKK+RG GRR+A+HKA KANK
Sbjct:    1 MSDKAPVTVRTRKFLRNTLLARRQMLVDVLHPGRPNVPKAELQEKLAKMYKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKVRGVGRRIARHKANKANK 137          
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|673042381|ref|XP_008875151.1| (40S ribosomal protein [Aphanomyces invadans] >gi|574469344|gb|ETV96359.1| 40S ribosomal protein [Aphanomyces invadans])

HSP 1 Score: 207.608 bits (527), Expect = 8.082e-67
Identity = 99/133 (74.44%), Postives = 114/133 (85.71%), Query Frame = 0
Query:    5 GPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
             PVT+R+RKF+RN LLARRQM++DVLHPGR NVPK ELQE ++ M+K A   T FL+GFRTAFGGGKS+GFALIYDT+ DAKKFEPK+RLVR GL  K E SRKQIKE+KNRAKKIRG GRR+A+HKA KANK
Sbjct:    3 APVTVRTRKFLRNTLLARRQMLVDVLHPGRPNVPKAELQEKLAKMYKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKIRGVGRRIARHKANKANK 135          
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|635359865|emb|CCI50507.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 201.83 bits (512), Expect = 1.382e-64
Identity = 95/137 (69.34%), Postives = 114/137 (83.21%), Query Frame = 0
Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
            MA+KGPVT+R+RKF+RN LLAR QM+++V+HPGRANVPK ELQE +  M+K     T  L+GFRT FGGGKSTGF LIYD++ DAK+FEPK+RL+R GL  K E+SRKQIKEAKNR KKIRG GRR+A+HKA KANK
Sbjct:    1 MAEKGPVTVRTRKFLRNTLLARVQMVVEVIHPGRANVPKAELQEKVGKMYKVKDTNTVVLYGFRTQFGGGKSTGFGLIYDSVNDAKRFEPKYRLIRQGLAEKVESSRKQIKEAKNRKKKIRGVGRRIARHKAAKANK 137          
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|325188695|emb|CCA23225.1| (40S ribosomal protein S24 putative [Albugo laibachii Nc14])

HSP 1 Score: 197.978 bits (502), Expect = 5.434e-63
Identity = 94/137 (68.61%), Postives = 113/137 (82.48%), Query Frame = 0
Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
            MA+KGPVT+R+RKF+RN LLAR QM+++V+HPGRANV K ELQE +  M+K     T  L+GFRT FGGGKSTGF LIYD++ DAK+FEPK+RL+R GL  K E+SRKQIKEAKNR KKIRG GRR+A+HKA KANK
Sbjct:    1 MAEKGPVTVRTRKFLRNPLLARGQMVVEVIHPGRANVSKAELQEKVGKMYKVKDTNTVVLYGFRTQFGGGKSTGFGLIYDSVNDAKRFEPKYRLIRQGLAEKVESSRKQIKEAKNRKKKIRGVGRRIARHKAAKANK 137          
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|675193207|ref|XP_008905488.1| (hypothetical protein PPTG_11004 [Phytophthora parasitica INRA-310] >gi|566024127|gb|ETI47038.1| hypothetical protein F443_08650 [Phytophthora parasitica P1569] >gi|567961424|gb|ETK86966.1| hypothetical protein L915_08484 [Phytophthora parasitica] >gi|567990146|gb|ETL40380.1| hypothetical protein L916_08413 [Phytophthora parasitica] >gi|568019386|gb|ETL93534.1| hypothetical protein L917_08311 [Phytophthora parasitica] >gi|568049827|gb|ETM46793.1| hypothetical protein L914_08362 [Phytophthora parasitica] >gi|568094145|gb|ETN08927.1| hypothetical protein PPTG_11004 [Phytophthora parasitica INRA-310] >gi|570327814|gb|ETO75762.1| hypothetical protein F444_08706 [Phytophthora parasitica P1976] >gi|570951572|gb|ETP16829.1| hypothetical protein F441_08627 [Phytophthora parasitica CJ01A1] >gi|570985668|gb|ETP44886.1| hypothetical protein F442_08582 [Phytophthora parasitica P10297] >gi|970649880|gb|KUF89043.1| 40S ribosomal protein S24 [Phytophthora nicotianae] >gi|970664457|gb|KUG01359.1| 40S ribosomal protein S24 [Phytophthora nicotianae])

HSP 1 Score: 189.504 bits (480), Expect = 1.116e-59
Identity = 98/137 (71.53%), Postives = 118/137 (86.13%), Query Frame = 0
Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
            MADK PVT+R+RKF+RN+LLARRQM+++V+HPGR NVPK ELQE I+ M+K     T FL+GFRT FGGGKS+GF L+YDT+ DAK+FEPK+RL+R GLV K ETSRKQIKEAKNRAKK+RG GRR+A+HKA KANK
Sbjct:    1 MADKVPVTVRTRKFLRNSLLARRQMVVEVIHPGRPNVPKAELQEKIAKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRAKKVRGVGRRIARHKAAKANK 137          
BLAST of EWM28456.1 vs. NCBI_GenBank
Match: gi|695393827|ref|XP_009520718.1| (hypothetical protein PHYSODRAFT_285079 [Phytophthora sojae] >gi|348685615|gb|EGZ25430.1| hypothetical protein PHYSODRAFT_285079 [Phytophthora sojae])

HSP 1 Score: 189.119 bits (479), Expect = 2.039e-59
Identity = 98/137 (71.53%), Postives = 117/137 (85.40%), Query Frame = 0
Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
            MADK PVT+R+RKF+RN LLARRQM+++V+HPGRANVPK ELQE I+ M+K     T FL+GFRT FGGGKS+GF L+YDT+ DAK+FEPK+RL+R GLV K ETSRKQIKEAKNR KK+RG GRR+A+HKA KANK
Sbjct:    1 MADKVPVTVRTRKFLRNTLLARRQMVVEVIHPGRANVPKAELQEKIAKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRGKKVRGVGRRIARHKAAKANK 137          
The following BLAST results are available for this feature:
BLAST of EWM28456.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110860|gb|EWM28456.1|5.438e-94100.00Ribosomal protein L23/L15e core domain protein [Na... [more]
gi|1173928019|gb|OQR81746.1|2.913e-7175.9140S ribosomal protein S24 [Thraustotheca clavata][more]
gi|669157574|ref|XP_008614349.1|3.398e-7074.4530S ribosomal protein S24e [Saprolegnia diclina VS... [more]
gi|1173950314|gb|OQR98287.1|3.875e-7074.4540S ribosomal protein S24 [Achlya hypogyna][more]
gi|698790888|ref|XP_009828476.1|2.075e-6973.7240S ribosomal protein [Aphanomyces astaci] >gi|574... [more]
gi|673042381|ref|XP_008875151.1|8.082e-6774.4440S ribosomal protein [Aphanomyces invadans] >gi|5... [more]
gi|635359865|emb|CCI50507.1|1.382e-6469.34unnamed protein product [Albugo candida][more]
gi|325188695|emb|CCA23225.1|5.434e-6368.6140S ribosomal protein S24 putative [Albugo laibach... [more]
gi|675193207|ref|XP_008905488.1|1.116e-5971.53hypothetical protein PPTG_11004 [Phytophthora para... [more]
gi|695393827|ref|XP_009520718.1|2.039e-5971.53hypothetical protein PHYSODRAFT_285079 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2225rna2225Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications