rna2223, rna2223 (mRNA) Nannochloropsis gaditana

Overview
Namerna2223
Unique Namerna2223
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length657
Alignment locationCM002458.1:1202633..1203718 -

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Properties
Property NameValue
Producttranslation elongation factor tu
Orig transcript idgnl|cribi|Naga_101021g1.2489.mrna
Orig protein idgnl|cribi|Naga_101021g1.2489
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1202633..1203718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101021g1gene2126Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2223rna2223-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28458.1cds2215Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2223 ID=rna2223|Name=rna2223|organism=Nannochloropsis gaditana|type=mRNA|length=657bp
ATGGAGGTCACTGCCGAGAATGCCCGAGAATACGTCGAGCTCTACCTGCT
CTGGGTGCTGGAGGACAGTATCAAACCACATTTTGAGGCCTTTAGGAAAG
GATTTCTGAAGGTTTGTGGCGGCGACGCCCTAAACCTCTTCCACCCTCAA
GAACTCGAAGTCTTGCTCTGCGGTGCACCCCACCTTGATTTTCATGCCTT
GGAGGCCGCGGCACAGTACGAGGAACCTTTGAATGCCACCTCGCAATTGA
TAAAAAATTTCTGGAAGATTCTGCACAGCTTCGACGAGACGGAAAAAAAG
CTCTTCCTCAAGTTTATCAGCGGCAGTGACCGCGCCCCGATAAGGGGCCT
GGGCTCCATGACGTTCGTTATCAGCAAGCACGGTGATGACTCGGACCGGT
TGCCGTCAGCACATACTTGCTTCAATCATCTCCTCTTGCCGCTCTACTCT
TCCAAAGAAAAACTGGAAGCGAAGTTGAAAGCAGCCATGCTGAACTCGGA
GGGGTTTGGGGTAAGGACATGTGTGCAGCCATTCCTGTGGGCGCTGGTGA
CGATATGTCACGTTAAGAGACTCTCGGGACTACCGTGGAGGATCATCAGG
GCTTGGTCGAGCCACGCTGTAGGGGAGAGGTGGTGCCAAGTCGGAGCCTG
GTGGTGA
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protein sequence of rna2223

>rna2223-protein ID=rna2223-protein|Name=rna2223|organism=Nannochloropsis gaditana|type=polypeptide|length=134bp
MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELY
VLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVK
VSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA
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mRNA from alignment at CM002458.1:1202633..1203718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2223 ID=rna2223|Name=rna2223|organism=Nannochloropsis gaditana|type=mRNA|length=1086bp|location=Sequence derived from alignment at CM002458.1:1202633..1203718- (Nannochloropsis gaditana)
AGATGTTCAAGAAGACCCTGGACTATGGCGGGGCGGGGGACAACGTGGGT
TGTCTCCTCCGCACCGTCAAGAGGGATGAGGTGCAGCGGGGCCAGGTGCT
CGCCGCGCCCAACACGGTCAAGACGTACAAGGAGTTCGAAGCGGAGCTTT
ATGTCTTGACGCAGGAGGAAGGTAGGCCCGGGAGGTCCGGGAGGCGCTGG
GGGGGGGGAAGCTTTCCTGGTTCAATGTTTCCCTCCCTCTTCCGTTGCGC
GGGTTTACACGAAGGCTCTTCGCGTGCTGTCCTGAGGCATAATACTGGGG
TCTTTTTTCTTGCCTCTTTGCGCGCTGGGGGCCGCTCTCCGCCTTGTCCT
GGTCGTCCTCCCTTCTCATCACCCTGCGTGACCGCATCGGCCAGGGGGAG
GGCACGATGCGCTCGCGAGGTTTCTTTCCTCTCTCTGTCGCCGCCGCGTC
TTTTCTCCAGTCTCCTTCTCCCCGTGAAAGTACATGCGGCGTTGGTGGCG
TTGGCCTCGCCGCGAGCCCGGGCCCTTCTCCTCATCCGCCCTCTGCCATC
CCATTCCCACCCCTGCCTTCCTTTCCTTTCCTTCAGGGGGACGTCACACC
CCGTTCTTGGACAACTATCGCCCGCAGTTCTACATCCGCACCGCCGACGT
GACGGGGTCTATCACGCTTGGGGAAGGGAAGGAGATGGCAATGCCCGGGG
ATAACACCACGGTCAAGGTAAGGGTTAGCAGGATGGGGCGGGACGTGGGA
GGGTTTTCGGCGGGAGGGAGACGGAAAGAGAGAAAAAAAGCGGGAGTGAG
AGATGGATTCCTGGCCTCTGCCATGCTTATTCCTCTTGGCTATTGTTTGC
TCTCCAGGTGTCGCTCATCTATCCTACTGTGCTGAACGAGGGTCTCCGCT
TTGCCGTGCGAGAAGGGGGGCGTACCGTCGCGGCCGGTGTTGTCGCAAAG
ATGCTTGCGTAGAGACGAGGCAAACTGGTCTTGACGGCGGGCGAGCATGT
CGTTTCAAAGACGTTCGATGACGAGGAGGAACACCCTTTTGCCGGCATGG
TCAACCCCAAAGGAAAAAAAACTTGCCTCGCTTCAT
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Coding sequence (CDS) from alignment at CM002458.1:1202633..1203718-

>rna2223 ID=rna2223|Name=rna2223|organism=Nannochloropsis gaditana|type=CDS|length=1215bp|location=Sequence derived from alignment at CM002458.1:1202633..1203718- (Nannochloropsis gaditana)
GTGTCGCTCATCTATCCTACTGTGCTGAACGAGGGTCTCCGCTTTGCCGT
GCGAGAAGGGGGGCGTACCGTCGCGGCCGGTGTTGTCGCAAAGATGCTTG
CGTAGGGGGACGTCACACCCCGTTCTTGGACAACTATCGCCCGCAGTTCT
ACATCCGCACCGCCGACGTGACGGGGTCTATCACGCTTGGGGAAGGGAAG
GAGATGGCAATGCCCGGGGATAACACCACGGTCAAGATGTTCAAGAAGAC
CCTGGACTATGGCGGGGCGGGGGACAACGTGGGTTGTCTCCTCCGCACCG
TCAAGAGGGATGAGGTGCAGCGGGGCCAGGTGCTCGCCGCGCCCAACACG
GTCAAGACGTACAAGGAGTTCGAAGCGGAGCTTTATGTCTTGACGCAGGA
GGAAGGTGTCGCTCATCTATCCTACTGTGCTGAACGAGGGTCTCCGCTTT
GCCGTGCGAGAAGGGGGGCGTACCGTCGCGGCCGGTGTTGTCGCAAAGAT
GCTTGCGTAGGGGGACGTCACACCCCGTTCTTGGACAACTATCGCCCGCA
GTTCTACATCCGCACCGCCGACGTGACGGGGTCTATCACGCTTGGGGAAG
GGAAGGAGATGGCAATGCCCGGGGATAACACCACGGTCAAGATGTTCAAG
AAGACCCTGGACTATGGCGGGGCGGGGGACAACGTGGGTTGTCTCCTCCG
CACCGTCAAGAGGGATGAGGTGCAGCGGGGCCAGGTGCTCGCCGCGCCCA
ACACGGTCAAGACGTACAAGGAGTTCGAAGCGGAGCTTTATGTCTTGACG
CAGGAGGAAGGTGTCGCTCATCTATCCTACTGTGCTGAACGAGGGTCTCC
GCTTTGCCGTGCGAGAAGGGGGGCGTACCGTCGCGGCCGGTGTTGTCGCA
AAGATGCTTGCGTAGGGGGACGTCACACCCCGTTCTTGGACAACTATCGC
CCGCAGTTCTACATCCGCACCGCCGACGTGACGGGGTCTATCACGCTTGG
GGAAGGGAAGGAGATGGCAATGCCCGGGGATAACACCACGGTCAAGATGT
TCAAGAAGACCCTGGACTATGGCGGGGCGGGGGACAACGTGGGTTGTCTC
CTCCGCACCGTCAAGAGGGATGAGGTGCAGCGGGGCCAGGTGCTCGCCGC
GCCCAACACGGTCAAGACGTACAAGGAGTTCGAAGCGGAGCTTTATGTCT
TGACGCAGGAGGAAG
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Synonyms
Publications