EWM28458.1, cds2215 (CDS) Nannochloropsis gaditana

Overview
NameEWM28458.1
Unique Namecds2215
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1203548..1203716 -
Alignment locationCM002458.1:1203002..1203132 -
Alignment locationCM002458.1:1202757..1202861 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28458.1
Producttranslation elongation factor tu
Orig transcript idgnl|cribi|Naga_101021g1.2489.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1203548..1203716 -
CM002458.1supercontigCM002458.1:1203002..1203132 -
CM002458.1supercontigCM002458.1:1202757..1202861 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR009001Transl_elong_EF1A/Init_IF2_C
IPR009000Transl_B-barrel
IPR004160Transl_elong_EFTu/EF1A_C
Homology
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|585110864|gb|EWM28458.1| (translation elongation factor tu [Nannochloropsis gaditana])

HSP 1 Score: 274.248 bits (700), Expect = 2.690e-93
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
            MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA
Sbjct:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134          
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|1109667802|emb|SHH30094.1| (translation elongation factor TU, partial [Anaerosphaera aminiphila DSM 21120])

HSP 1 Score: 196.823 bits (499), Expect = 4.441e-62
Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = 0
Query:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKML 133
            MFKK LD   AGDN+G LLR V+R+E+QRGQVLAAP T+  + +FEAE+YVLT+EEGGRHTPF + YRPQFY+RT DVTG I L EG EM MPGDN T  V+LI P  ++EGLRFA+REGGRTVA+GVV+K+L
Sbjct:   46 MFKKQLDQAQAGDNIGALLRGVQREEIQRGQVLAAPGTIHPHHKFEAEVYVLTKEEGGRHTPFFNGYRPQFYLRTTDVTGDIQLPEGIEMVMPGDNATFTVTLIAPIAMDEGLRFAIREGGRTVASGVVSKLL 178          
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|1180006726|ref|WP_083529080.1| (elongation factor Tu [Anaerosphaera aminiphila])

HSP 1 Score: 196.823 bits (499), Expect = 4.452e-62
Identity = 91/133 (68.42%), Postives = 109/133 (81.95%), Query Frame = 0
Query:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKML 133
            MFKK LD   AGDN+G LLR V+R+E+QRGQVLAAP T+  + +FEAE+YVLT+EEGGRHTPF + YRPQFY+RT DVTG I L EG EM MPGDN T  V+LI P  ++EGLRFA+REGGRTVA+GVV+K+L
Sbjct:   42 MFKKQLDQAQAGDNIGALLRGVQREEIQRGQVLAAPGTIHPHHKFEAEVYVLTKEEGGRHTPFFNGYRPQFYLRTTDVTGDIQLPEGIEMVMPGDNATFTVTLIAPIAMDEGLRFAIREGGRTVASGVVSKLL 174          
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|770085458|gb|KJK02950.1| (elongation factor Tu, partial [Burkholderiaceae bacterium 26])

HSP 1 Score: 195.667 bits (496), Expect = 8.909e-62
Identity = 90/133 (67.67%), Postives = 107/133 (80.45%), Query Frame = 0
Query:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKML 133
            MF+K LD G AGDNVG LLR  KR++VQRGQVLA P ++K + EF  E+Y+L+++EGGRHTPF +NYRPQFY RT DVTGSI L EGKEM MPGDN ++ V LI P  + EGLRFA+REGGRTV AGVVAK+L
Sbjct:   35 MFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLAKPGSIKPHTEFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIALPEGKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIL 167          
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|733417449|gb|KHL06545.1| (elongation factor Tu, partial [Mumia flava])

HSP 1 Score: 196.052 bits (497), Expect = 1.569e-61
Identity = 90/133 (67.67%), Postives = 107/133 (80.45%), Query Frame = 0
Query:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKML 133
            MF+K LD G AGDNVG LLR  KR++VQRGQVLA P ++K + EF  E+Y+L+++EGGRHTPF +NYRPQFY RT DVTGSI L EGKEM MPGDN ++ V LI P  + EGLRFA+REGGRTV AGVVAK+L
Sbjct:   56 MFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLAKPGSIKPHTEFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIALPEGKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIL 188          
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|1178875006|ref|WP_083254147.1| (elongation factor Tu [Pandoraea sp. ISTKB])

HSP 1 Score: 195.282 bits (495), Expect = 2.215e-61
Identity = 89/134 (66.42%), Postives = 108/134 (80.60%), Query Frame = 0
Query:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
            MF+K LD G AGDNVG LLR  KR+EVQRGQVLA P ++K + +F  E+Y+L+++EGGRHTPF +NYRPQFY RT DVTGSI+L EGKEM MPGDN ++ V LI P  + EGLRFA+REGGRTV AGVVA ++A
Sbjct:   49 MFRKLLDQGQAGDNVGILLRGTKREEVQRGQVLAKPGSIKPHTDFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGSISLPEGKEMVMPGDNVSITVKLIAPIAMTEGLRFAIREGGRTVGAGVVATIVA 182          
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|594554544|gb|EXU78594.1| (translation elongation factor Tu, partial [Comamonas aquatica DA1877])

HSP 1 Score: 194.126 bits (492), Expect = 3.557e-61
Identity = 90/134 (67.16%), Postives = 107/134 (79.85%), Query Frame = 0
Query:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
            MF+K LD G AGDNVG LLR  KR++V+RGQVL  P ++K +  F AE+YVL+++EGGRHTPF +NYRPQFY RT DVTGSI L EGKEM MPGDN ++ V LI P  + EGLRFA+REGGRTV AGVVAK+LA
Sbjct:   26 MFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPEGKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKVLA 159          
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|491924492|ref|WP_005675179.1| (translation elongation factor Tu, partial [Lautropia mirabilis] >gi|319741174|gb|EFV93606.1| translation elongation factor Tu, partial [Lautropia mirabilis ATCC 51599])

HSP 1 Score: 198.749 bits (504), Expect = 3.755e-61
Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 0
Query:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
            MF+K LD G AGDNVG LLR  KR++V+RGQVLA P T+K + EFEAE+Y+L+++EGGRHTPF  NYRPQFY RT DVTGS+TL EG EM MPGDN  +KV LI P  + +GLRFA+REGGRTV AGVVAK++A
Sbjct:  169 MFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGTIKPHTEFEAEVYILSKDEGGRHTPFFSNYRPQFYFRTTDVTGSVTLPEGTEMVMPGDNVQMKVKLIAPIAMEQGLRFAIREGGRTVGAGVVAKIIA 302          
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|759665023|ref|WP_043382615.1| (elongation factor Tu, partial [Comamonas aquatica] >gi|594556252|gb|EXU80278.1| elongation factor Tu [Comamonas aquatica DA1877])

HSP 1 Score: 194.126 bits (492), Expect = 7.300e-61
Identity = 90/134 (67.16%), Postives = 107/134 (79.85%), Query Frame = 0
Query:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
            MF+K LD G AGDNVG LLR  KR++V+RGQVL  P ++K +  F AE+YVL+++EGGRHTPF +NYRPQFY RT DVTGSI L EGKEM MPGDN ++ V LI P  + EGLRFA+REGGRTV AGVVAK+LA
Sbjct:   49 MFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPEGKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKVLA 182          
BLAST of EWM28458.1 vs. NCBI_GenBank
Match: gi|676386051|ref|XP_009036304.1| (hypothetical protein AURANDRAFT_60042 [Aureococcus anophagefferens] >gi|323453323|gb|EGB09195.1| hypothetical protein AURANDRAFT_60042 [Aureococcus anophagefferens])

HSP 1 Score: 199.904 bits (507), Expect = 1.134e-60
Identity = 93/134 (69.40%), Postives = 112/134 (83.58%), Query Frame = 0
Query:    1 MFKKTLDYGGAGDNVGCLLRTVKRDEVQRGQVLAAPNTVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTADVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLNEGLRFAVREGGRTVAAGVVAKMLA 134
            MFKK+LD G AGDNVG LLR V+RDEVQRGQ+LAAP TV   K+FEAE+YVLT+EEGGRHTPF  NYRPQF+IRTADVTG++ L +G EM MPGDN T+ + LI P  + EGLRFA+REGG+TV AGVV+K+++
Sbjct:  252 MFKKSLDRGEAGDNVGALLRGVRRDEVQRGQILAAPGTVPMTKKFEAEVYVLTKEEGGRHTPFFSNYRPQFFIRTADVTGTVDLPDGVEMVMPGDNATLNIELISPLAITEGLRFALREGGKTVGAGVVSKVVS 385          
The following BLAST results are available for this feature:
BLAST of EWM28458.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110864|gb|EWM28458.1|2.690e-93100.00translation elongation factor tu [Nannochloropsis ... [more]
gi|1109667802|emb|SHH30094.1|4.441e-6268.42translation elongation factor TU, partial [Anaeros... [more]
gi|1180006726|ref|WP_083529080.1|4.452e-6268.42elongation factor Tu [Anaerosphaera aminiphila][more]
gi|770085458|gb|KJK02950.1|8.909e-6267.67elongation factor Tu, partial [Burkholderiaceae ba... [more]
gi|733417449|gb|KHL06545.1|1.569e-6167.67elongation factor Tu, partial [Mumia flava][more]
gi|1178875006|ref|WP_083254147.1|2.215e-6166.42elongation factor Tu [Pandoraea sp. ISTKB][more]
gi|594554544|gb|EXU78594.1|3.557e-6167.16translation elongation factor Tu, partial [Comamon... [more]
gi|491924492|ref|WP_005675179.1|3.755e-6167.91translation elongation factor Tu, partial [Lautrop... [more]
gi|759665023|ref|WP_043382615.1|7.300e-6167.16elongation factor Tu, partial [Comamonas aquatica]... [more]
gi|676386051|ref|XP_009036304.1|1.134e-6069.40hypothetical protein AURANDRAFT_60042 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2223rna2223Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications