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Properties
| Property Name | Value |
|---|
| Product | hect e3 ubiquitin |
| Orig transcript id | gnl|cribi|Naga_100617g4.7554.mrna |
| Orig protein id | gnl|cribi|Naga_100617g4.7554 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1197018..1198448 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2222 ID=rna2222|Name=rna2222|organism=Nannochloropsis gaditana|type=mRNA|length=1578bp
ATGTAACGCCAGTTGGACGGGACAAAACGCGGGGCTGTAAAGTAAATTGT
CGTCCTAGTGCCTGAGTCTTGCACGTCTAGTCAGCGCCTCCCGCCCTCCT
GATCGGATCGTAGTACTTTTCCCCGACAACTTTACCTGGTGACAACTATC
GGGGGATGAACTACAGGACAAGGCCCTCTTAAGTTCGTATCAGATATGAA
ATAGGCTCCTTTGACGTGCTGAACGTTTTCAGCCGTAGTGTCCCAATGAC
TTCATGTCGTACCCTAACCCCCACGTCGGCTTCACATGAGTCGCTAGCGC
AGTCAAAAAAGTGATAATTGCATACCCTACACACAATGCAACAGGGCCCT
TCTCTCCCTGCTGCAAACGTTGGGCGCACATGGGTGCGATGAGAAGACAC
GTGGGATGGAGATGGCCACCATTGACGCACCCATTACGCGCTGTCCTCTT
ACTCCTATTCCTGCACTGCAGGAGAGACGTAGCTCTCGCCTTCCGTTTTC
CCGGGAACCCTTTCCTTCCCAGCGCGCCTCGAAGCGTGCCGCAAGGGCAT
TCACCCCGCCCCAGAAGTCTTGTTCCGTCGTGCACAGCCACTACCTCCTC
CAATAACAATCCTCATTCCCTTCCAGACGACGTGGCCTCTCCCTCAGTAA
AGCCATCTTCCGCGCCCTGCCTCCCCCAATCACGGCTTTCTGTCCGCCCT
GCCAACAAAGCGGACCTTCGTCGCGTCGCTACCATGCAGGTGACCGAATA
TGGAGGCCAGGGCATTCTTTACCTCTGGCATTATTTGCAAGAACTTGATC
GTCTTCAAACCTCCTACTGGATCGATCCGTTCCACCACACCATGCTTGTG
GCCGTGGACAGCACTCCCTCTGCTTTTCGTCCCTTCTCCAGGATCTTTCA
ATCATGGGACGCTTTTTGGGGGGGGGACCCGCGCATTGTGGGTTTCGTCG
ACTTGGACGCCCGGGACCGGCGTGTGGACAAGACCACGCCCACGCCCTAC
CTCTCCGACCTGATCGTGGAAGGTTCTCGAAGGGGGCAAGGCCTGGGTCG
GCAATTGATGGAAGCAGCGGAGGACGAAGCACGGCGATGGGGCTACCCAG
CCGTGTACTTGAAAGTGCGGAAGTGCAATGCGCGTGGTTTCGGGTTGTAC
GCCTCCCTGGGGTACGAGGTGCTGTGGGAATGGCCGGGGGAGAGGGTGTG
GATGATGAGGAAGTGGGTGGTGGACGAGGAGGACAGGAAGGAGGCGGTGA
AGAAGGAGAGGGAGGGGTGGGAAGGGATGGTAGGCGCGGTGATGATGCCG
TTCATGACGTGGGCGGGGGAGGAGGGAGGAGGAAAGGAGGGGGGGGAAGA
AGGGAAGGAGGTGGGGACGGAGAACTTGGACGCCAGAAAAGAAGGAATGT
AGGTACAGGCAAGGGTGTCTGCATGCACATGTGAGGTTGCCGGACGAATG
GAGCCAGTCGTGAGGTTCCATGCCAGAGTCGCGTCCGAACATGATGCCCC
TGGAGCGCGGTGGGTGTCTTTACATAAGCGGTTGTCAAAAGAAAGTCATG
CACAAGTAAGCAACGTGAAAGCTTCGTC back to topprotein sequence of rna2222 >rna2222-protein ID=rna2222-protein|Name=rna2222|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQ
ELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKK
LFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYS
SKEKLEAKLKAAMLNSEGFGVRTCVQPFLWALVTICHVKRLSGLPWRIIR
AWSSHAVGERWCQVGAWW back to topmRNA from alignment at CM002458.1:1197018..1198448- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2222 ID=rna2222|Name=rna2222|organism=Nannochloropsis gaditana|type=mRNA|length=1431bp|location=Sequence derived from alignment at CM002458.1:1197018..1198448- (Nannochloropsis gaditana)
ATGGAGGTCACTGCCGAGAATGCCCGAGAATACGTCGAGCTCTACCTGCT
CTGGGTGCTGGAGGACAGTATCAAACCACATTTTGAGGCCTTTAGGAAAG
GATTTCTGAAGGTGAAGCGCCCGTCTTTTGTATTTGAGCTTTTGAGGCAT
CCGCTTTCTCTGTAACCCTCGTTCTCTCCCTTCCACTTTCCCTTTCTTTC
CCCTTCTGTCTTTATTCGGTCGGTTGTCCGGTCGATCCGGAACCCTCCTC
GGCCACCTGATCCAATTTCCCTTCCTCTTTTTCTCGAAAGGTTTGTGGCG
GCGACGCCCTAAACCTCTTCCACCCTCAAGAACTCGAAGTCTTGCTCTGC
GGTGCACCCCACCTTGATTTTCATGCCTTGGAGGCCGCGGCACAGTACGA
GGTAGGGCGGGCGGGAGGGAGGGAGGGAGGGCGAGGACCCAACAAGGGGA
ATGGTGGGAGGCAAGTCATGATCCTTGGGACAAAAAAGCATTCAGCGCAA
TAGAAATCATGGAATCATCGACAGGAACCTTTGAATGCCACCTCGCAATT
GATAAAAAATTTCTGGAAGATTCTGCACAGCTTCGACGAGACGGAAAAAA
AGTAAGATGGGCGCTTTCTCCCCCCGCCCCCACACCCTTTTTGTTTCCCT
CCTCCCCCCCCCCCCTGTTTGCTCTTTGCGAATCAACGTCGATTTGTTTC
TTTGCCGCTGAATGCAGAATACGTAATCTTGCCAGCTCAGCCTTTCTCTT
CTCTCCTTTTTTCCCCCTCTCATCCATCCTTTCCTCCCTCCCTCCCTCCA
CCAGGCTCTTCCTCAAGTTTATCAGCGGCAGTGACCGCGCCCCGATAAGG
GGCCTGGGCTCCATGACGTTCGTTATCAGCAAGCACGGTGATGACTCGGA
CCGGTTGCCGTCAGCACATACGTAAGGAAGGAGGGAGGAAGGAGGGGAGG
GCTTAGGCAGCCTTGTACTTAGGGTCGAAGAGATGGAGAGGGCCGAAAAT
GCACCCACCGGCAACGCTTTTCCCTCCTTATCTTCCTTCCCCTCCTTCCT
TCCCCTCCTCCCCTCCTTCGCCTTCGTGTGCCTACAGTTGCTTCAATCAT
CTCCTCTTGCCGCTCTACTCTTCCAAAGAAAAACTGGAAGCGAAGTTGAA
AGCAGCCATGCTGAACTCGGAGGGGTTTGGTCTTAGATAGTGGAGGAGGC
AGAATGATCCGGGGCCTGGCAGAGCTGACGGGGAATGCGCGGTGGGCAGA
TGCTCGAGCGTCGCCCTGAGCTGCCCGCAAAGGGGTAAGGACATGTGTGC
AGCCATTCCTGTGGGCGCTGGTGACGATATGTCACGTTAAGAGACTCTCG
GGACTACCGTGGAGGATCATCAGGGCTTGGTCGAGCCACGCTGTAGGGGA
GAGGTGGTGCCAAGTCGGAGCCTGGTGGTGA back to topCoding sequence (CDS) from alignment at CM002458.1:1197018..1198448- >rna2222 ID=rna2222|Name=rna2222|organism=Nannochloropsis gaditana|type=CDS|length=3942bp|location=Sequence derived from alignment at CM002458.1:1197018..1198448- (Nannochloropsis gaditana)
GGGTAAGGACATGTGTGCAGCCATTCCTGTGGGCGCTGGTGACGATATGT
CACGTTAAGAGACTCTCGGGACTACCGTGGAGGATCATCAGGGCTTGGTC
GAGCCACGCTGTAGGGGAGAGGTGGTGCCAAGTCGGAGCCTGGTGGTGAT
TGCTTCAATCATCTCCTCTTGCCGCTCTACTCTTCCAAAGAAAAACTGGA
AGCGAAGTTGAAAGCAGCCATGCTGAACTCGGAGGGGTTTGGCTCTTCCT
CAAGTTTATCAGCGGCAGTGACCGCGCCCCGATAAGGGGCCTGGGCTCCA
TGACGTTCGTTATCAGCAAGCACGGTGATGACTCGGACCGGTTGCCGTCA
GCACATACGAACCTTTGAATGCCACCTCGCAATTGATAAAAAATTTCTGG
AAGATTCTGCACAGCTTCGACGAGACGGAAAAAAAGTTTGTGGCGGCGAC
GCCCTAAACCTCTTCCACCCTCAAGAACTCGAAGTCTTGCTCTGCGGTGC
ACCCCACCTTGATTTTCATGCCTTGGAGGCCGCGGCACAGTACGAGATGG
AGGTCACTGCCGAGAATGCCCGAGAATACGTCGAGCTCTACCTGCTCTGG
GTGCTGGAGGACAGTATCAAACCACATTTTGAGGCCTTTAGGAAAGGATT
TCTGAAGGGGTAAGGACATGTGTGCAGCCATTCCTGTGGGCGCTGGTGAC
GATATGTCACGTTAAGAGACTCTCGGGACTACCGTGGAGGATCATCAGGG
CTTGGTCGAGCCACGCTGTAGGGGAGAGGTGGTGCCAAGTCGGAGCCTGG
TGGTGATTGCTTCAATCATCTCCTCTTGCCGCTCTACTCTTCCAAAGAAA
AACTGGAAGCGAAGTTGAAAGCAGCCATGCTGAACTCGGAGGGGTTTGGC
TCTTCCTCAAGTTTATCAGCGGCAGTGACCGCGCCCCGATAAGGGGCCTG
GGCTCCATGACGTTCGTTATCAGCAAGCACGGTGATGACTCGGACCGGTT
GCCGTCAGCACATACGAACCTTTGAATGCCACCTCGCAATTGATAAAAAA
TTTCTGGAAGATTCTGCACAGCTTCGACGAGACGGAAAAAAAGTTTGTGG
CGGCGACGCCCTAAACCTCTTCCACCCTCAAGAACTCGAAGTCTTGCTCT
GCGGTGCACCCCACCTTGATTTTCATGCCTTGGAGGCCGCGGCACAGTAC
GAGATGGAGGTCACTGCCGAGAATGCCCGAGAATACGTCGAGCTCTACCT
GCTCTGGGTGCTGGAGGACAGTATCAAACCACATTTTGAGGCCTTTAGGA
AAGGATTTCTGAAGGGGTAAGGACATGTGTGCAGCCATTCCTGTGGGCGC
TGGTGACGATATGTCACGTTAAGAGACTCTCGGGACTACCGTGGAGGATC
ATCAGGGCTTGGTCGAGCCACGCTGTAGGGGAGAGGTGGTGCCAAGTCGG
AGCCTGGTGGTGATTGCTTCAATCATCTCCTCTTGCCGCTCTACTCTTCC
AAAGAAAAACTGGAAGCGAAGTTGAAAGCAGCCATGCTGAACTCGGAGGG
GTTTGGCTCTTCCTCAAGTTTATCAGCGGCAGTGACCGCGCCCCGATAAG
GGGCCTGGGCTCCATGACGTTCGTTATCAGCAAGCACGGTGATGACTCGG
ACCGGTTGCCGTCAGCACATACGAACCTTTGAATGCCACCTCGCAATTGA
TAAAAAATTTCTGGAAGATTCTGCACAGCTTCGACGAGACGGAAAAAAAG
TTTGTGGCGGCGACGCCCTAAACCTCTTCCACCCTCAAGAACTCGAAGTC
TTGCTCTGCGGTGCACCCCACCTTGATTTTCATGCCTTGGAGGCCGCGGC
ACAGTACGAGATGGAGGTCACTGCCGAGAATGCCCGAGAATACGTCGAGC
TCTACCTGCTCTGGGTGCTGGAGGACAGTATCAAACCACATTTTGAGGCC
TTTAGGAAAGGATTTCTGAAGGGGTAAGGACATGTGTGCAGCCATTCCTG
TGGGCGCTGGTGACGATATGTCACGTTAAGAGACTCTCGGGACTACCGTG
GAGGATCATCAGGGCTTGGTCGAGCCACGCTGTAGGGGAGAGGTGGTGCC
AAGTCGGAGCCTGGTGGTGATTGCTTCAATCATCTCCTCTTGCCGCTCTA
CTCTTCCAAAGAAAAACTGGAAGCGAAGTTGAAAGCAGCCATGCTGAACT
CGGAGGGGTTTGGCTCTTCCTCAAGTTTATCAGCGGCAGTGACCGCGCCC
CGATAAGGGGCCTGGGCTCCATGACGTTCGTTATCAGCAAGCACGGTGAT
GACTCGGACCGGTTGCCGTCAGCACATACGAACCTTTGAATGCCACCTCG
CAATTGATAAAAAATTTCTGGAAGATTCTGCACAGCTTCGACGAGACGGA
AAAAAAGTTTGTGGCGGCGACGCCCTAAACCTCTTCCACCCTCAAGAACT
CGAAGTCTTGCTCTGCGGTGCACCCCACCTTGATTTTCATGCCTTGGAGG
CCGCGGCACAGTACGAGATGGAGGTCACTGCCGAGAATGCCCGAGAATAC
GTCGAGCTCTACCTGCTCTGGGTGCTGGAGGACAGTATCAAACCACATTT
TGAGGCCTTTAGGAAAGGATTTCTGAAGGGGTAAGGACATGTGTGCAGCC
ATTCCTGTGGGCGCTGGTGACGATATGTCACGTTAAGAGACTCTCGGGAC
TACCGTGGAGGATCATCAGGGCTTGGTCGAGCCACGCTGTAGGGGAGAGG
TGGTGCCAAGTCGGAGCCTGGTGGTGATTGCTTCAATCATCTCCTCTTGC
CGCTCTACTCTTCCAAAGAAAAACTGGAAGCGAAGTTGAAAGCAGCCATG
CTGAACTCGGAGGGGTTTGGCTCTTCCTCAAGTTTATCAGCGGCAGTGAC
CGCGCCCCGATAAGGGGCCTGGGCTCCATGACGTTCGTTATCAGCAAGCA
CGGTGATGACTCGGACCGGTTGCCGTCAGCACATACGAACCTTTGAATGC
CACCTCGCAATTGATAAAAAATTTCTGGAAGATTCTGCACAGCTTCGACG
AGACGGAAAAAAAGTTTGTGGCGGCGACGCCCTAAACCTCTTCCACCCTC
AAGAACTCGAAGTCTTGCTCTGCGGTGCACCCCACCTTGATTTTCATGCC
TTGGAGGCCGCGGCACAGTACGAGATGGAGGTCACTGCCGAGAATGCCCG
AGAATACGTCGAGCTCTACCTGCTCTGGGTGCTGGAGGACAGTATCAAAC
CACATTTTGAGGCCTTTAGGAAAGGATTTCTGAAGGGGTAAGGACATGTG
TGCAGCCATTCCTGTGGGCGCTGGTGACGATATGTCACGTTAAGAGACTC
TCGGGACTACCGTGGAGGATCATCAGGGCTTGGTCGAGCCACGCTGTAGG
GGAGAGGTGGTGCCAAGTCGGAGCCTGGTGGTGATTGCTTCAATCATCTC
CTCTTGCCGCTCTACTCTTCCAAAGAAAAACTGGAAGCGAAGTTGAAAGC
AGCCATGCTGAACTCGGAGGGGTTTGGCTCTTCCTCAAGTTTATCAGCGG
CAGTGACCGCGCCCCGATAAGGGGCCTGGGCTCCATGACGTTCGTTATCA
GCAAGCACGGTGATGACTCGGACCGGTTGCCGTCAGCACATACGAACCTT
TGAATGCCACCTCGCAATTGATAAAAAATTTCTGGAAGATTCTGCACAGC
TTCGACGAGACGGAAAAAAAGTTTGTGGCGGCGACGCCCTAAACCTCTTC
CACCCTCAAGAACTCGAAGTCTTGCTCTGCGGTGCACCCCACCTTGATTT
TCATGCCTTGGAGGCCGCGGCACAGTACGAGATGGAGGTCACTGCCGAGA
ATGCCCGAGAATACGTCGAGCTCTACCTGCTCTGGGTGCTGGAGGACAGT
ATCAAACCACATTTTGAGGCCTTTAGGAAAGGATTTCTGAAG back to top
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