EWM28462.1, cds2214 (CDS) Nannochloropsis gaditana

Overview
NameEWM28462.1
Unique Namecds2214
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1198338..1198448 -
Alignment locationCM002458.1:1198048..1198158 -
Alignment locationCM002458.1:1197848..1197924 -
Alignment locationCM002458.1:1197528..1197644 -
Alignment locationCM002458.1:1197270..1197361 -
Alignment locationCM002458.1:1197018..1197166 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28462.1
Producthect e3 ubiquitin
Orig transcript idgnl|cribi|Naga_100617g4.7554.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1198338..1198448 -
CM002458.1supercontigCM002458.1:1198048..1198158 -
CM002458.1supercontigCM002458.1:1197848..1197924 -
CM002458.1supercontigCM002458.1:1197528..1197644 -
CM002458.1supercontigCM002458.1:1197270..1197361 -
CM002458.1supercontigCM002458.1:1197018..1197166 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT
Homology
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|585110870|gb|EWM28462.1| (hect e3 ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 450.284 bits (1157), Expect = 3.495e-160
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
Query:    1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVRTCVQPFLWALVTICHVKRLSGLPWRIIRAWSSHAVGERWCQVGAWW 218
            MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVRTCVQPFLWALVTICHVKRLSGLPWRIIRAWSSHAVGERWCQVGAWW
Sbjct:    1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVRTCVQPFLWALVTICHVKRLSGLPWRIIRAWSSHAVGERWCQVGAWW 218          
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|552839812|ref|XP_005849888.1| (hypothetical protein CHLNCDRAFT_21324 [Chlorella variabilis] >gi|307109548|gb|EFN57786.1| hypothetical protein CHLNCDRAFT_21324 [Chlorella variabilis])

HSP 1 Score: 203.756 bits (517), Expect = 5.180e-60
Identity = 95/172 (55.23%), Postives = 126/172 (73.26%), Query Frame = 0
Query:    1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVR 172
            + VTA N REYV+LY  W+LE S+   F AFR GFL+VCGG AL LF P ELE+L+CG PHLDF AL+A A+YE   +A  Q ++ FW++LHS    +K+ FL F +GSDRAP+ GLG +  +I + G DSD LP++HTCFN LLLP Y+SK++L AKL  A+ N++GFG++
Sbjct:  283 IPVTAANRREYVDLYTAWLLEGSVGRQFGAFRAGFLRVCGGPALTLFTPAELELLVCGLPHLDFEALQAVAKYEGGYSAEHQEVRWFWEVLHSLSLEQKRAFLMFTTGSDRAPVGGLGKLPLLIQRAGPDSDNLPTSHTCFNSLLLPEYASKDRLRAKLLTAVENAQGFGLQ 454          
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|813127447|ref|XP_012197348.1| (hypothetical protein SPRG_03381 [Saprolegnia parasitica CBS 223.65] >gi|641538331|gb|KDO32165.1| hypothetical protein SPRG_03381 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 205.297 bits (521), Expect = 1.087e-58
Identity = 95/171 (55.56%), Postives = 125/171 (73.10%), Query Frame = 0
Query:    1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171
            M VT  N  EYV  Y+ +V   S+   + AF +GF  VCGG AL LF P+ELE+L+CG+P LDF ALE  A Y++  +A SQ I+ FW ++H+F   EKK  LKF +GSDRAPIRGL +M FVIS++G DSDRLP+AHTCFNHLLLP Y+++EK++ +L+ A+  SEGFG+
Sbjct:  521 MAVTTANRHEYVAKYVEYVTTTSVAQQYGAFHRGFHFVCGGHALELFRPEELELLICGSPELDFEALEEVAHYDDGFSAESQCIQYFWSVVHAFSLDEKKALLKFCTGSDRAPIRGLSNMVFVISRNGPDSDRLPTAHTCFNHLLLPEYATREKMKDRLELAITQSEGFGL 691          
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|168050969|ref|XP_001777929.1| (predicted protein [Physcomitrella patens] >gi|162670689|gb|EDQ57253.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 194.897 bits (494), Expect = 5.844e-58
Identity = 90/172 (52.33%), Postives = 125/172 (72.67%), Query Frame = 0
Query:    1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVR 172
            + VT +N   YV LY+ ++LEDSI+  F+AF +GF +VC G AL+LF  +ELE+L+CG PH DF ALE   +YE      SQ+IK FW+++ S    EKK  L F +G+DRAP+ GL ++ F+I+++GDD+DRLP+AHTCFN L++P YSSK KLE +LK A+ NS GFG++
Sbjct:  149 ITVTNDNRERYVSLYVKYLLEDSIREQFDAFLEGFYQVCIGPALSLFRHEELELLICGLPHFDFDALERVTKYENGYTKDSQVIKWFWEVVKSMSLDEKKQLLFFTTGNDRAPVGGLATLKFIITRNGDDTDRLPTAHTCFNVLMVPNYSSKSKLENRLKLAIANSTGFGLQ 320          
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|1173944861|gb|OQR93549.1| (HECT E3 ubiquitin ligase [Thraustotheca clavata])

HSP 1 Score: 202.601 bits (514), Expect = 1.311e-57
Identity = 95/169 (56.21%), Postives = 124/169 (73.37%), Query Frame = 0
Query:    3 VTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171
            VT+ N  EYV  Y+ +V   S+   + AF +GF  VCGGDAL LF  +ELE+L+CG+P LDF AL+ AA+Y++     S  ++ FW ++H+F   EKK  LKF +GSDRAPIRGL SM FVIS++G DSDRLP+AHTCFNHLLLP YSS+EK++ +LK A+  SEGFG+
Sbjct:  520 VTSANRGEYVAKYVEYVTTTSVAEQYGAFHRGFHFVCGGDALKLFRSEELELLICGSPELDFEALQEAARYDDGFTEDSPCVQFFWNVVHAFSLEEKKQLLKFCTGSDRAPIRGLSSMVFVISRNGSDSDRLPTAHTCFNHLLLPDYSSQEKMQERLKLAISQSEGFGL 688          
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|669170859|ref|XP_008620778.1| (hypothetical protein SDRG_16351 [Saprolegnia diclina VS20] >gi|530727561|gb|EQC25803.1| hypothetical protein SDRG_16351 [Saprolegnia diclina VS20])

HSP 1 Score: 202.601 bits (514), Expect = 1.532e-57
Identity = 94/171 (54.97%), Postives = 125/171 (73.10%), Query Frame = 0
Query:    1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171
            M VTA N  EYV  Y+ +V   S+   + AF +GF  VCGG AL LF P+ELE+L+CG+P LDF ALE  A Y++  +A S  I+ FW ++H+F   EKK  LKF +GSDRAPIRGL +M FVIS++G DSDRLP+AHTCFNHLLLP Y+++EK++ +L+ A+  +EGFG+
Sbjct:  521 MAVTAANRDEYVAKYVEYVTTTSVAQQYGAFHRGFHFVCGGHALELFRPEELELLICGSPELDFEALEEVAHYDDGFSAESPSIQYFWSVVHAFSLDEKKALLKFCTGSDRAPIRGLSNMVFVISRNGPDSDRLPTAHTCFNHLLLPEYATREKMKDRLELAITQAEGFGL 691          
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|1173943960|gb|OQR92752.1| (HECT E3 ubiquitin ligase [Achlya hypogyna])

HSP 1 Score: 199.134 bits (505), Expect = 2.621e-56
Identity = 90/169 (53.25%), Postives = 122/169 (72.19%), Query Frame = 0
Query:    3 VTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171
            VT  N  +YV  Y+ +     +   + AF +GF  VCGGDAL+LF P+ELE+L+CG+  LDF ALE  A Y++  NA S  ++NFW ++H F   EKK  LKF +GSDRAPIRGL +M FVIS++G DSDRLP+AHTCFNHLLLP Y++++K++ +L+ A+  SEGFG+
Sbjct:  520 VTRANRADYVAKYVEYSTTTCVAQQYGAFHRGFHFVCGGDALSLFRPEELELLICGSEELDFEALEEVAHYDDGFNAESSAVRNFWSVVHEFSLAEKKALLKFCTGSDRAPIRGLSNMVFVISRNGPDSDRLPTAHTCFNHLLLPDYTTRDKMKNRLQLAITQSEGFGL 688          
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|1026765386|gb|OAE26105.1| (hypothetical protein AXG93_4022s1170 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 196.052 bits (497), Expect = 1.462e-55
Identity = 92/169 (54.44%), Postives = 124/169 (73.37%), Query Frame = 0
Query:    3 VTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171
            VT  N +EYV+L + + +E SI+  FEAF+ GF K+C G+ L+LF P ELE L+CG+P LDF ALE    YE+     S++I +FW+++HS DE  KK  L F++G DRAPI+GL ++ FVIS++G DS+RLP+AHTCFNHLLLP YSSK KL  +L  A+ N+EGFG+
Sbjct:  463 VTQGNRKEYVDLCVEYYMELSIQRAFEAFKHGFQKLCKGNVLDLFQPVELEQLICGSPELDFEALERNTLYEDGYRKDSKVISDFWEVVHSLDEENKKRLLFFVTGCDRAPIKGLANLHFVISRNGTDSERLPTAHTCFNHLLLPEYSSKGKLRERLMTAISNAEGFGL 631          
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|470527595|ref|XP_004357184.1| (o ubiquitin protein ligase E3A [Acanthamoeba castellanii str. Neff] >gi|440804151|gb|ELR25029.1| o ubiquitin protein ligase E3A [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 196.052 bits (497), Expect = 3.219e-55
Identity = 91/169 (53.85%), Postives = 121/169 (71.60%), Query Frame = 0
Query:    3 VTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGV 171
            +T +N +EYV+LY+ W L+DSI   FEAF  GF  VC   A ++F  +ELE L+CG+P LDF  LE   QY+   +   ++IK+FW I+HS    EKK  L F +GSDR+PI GLG + FVI++HG+DSDRLP AHTCFNHLLLP Y+S+EKL+ +L  A+ N+EGFG+
Sbjct:  526 LTNDNRQEYVDLYVRWYLKDSIAAQFEAFLSGFRLVCESRAFDMFRAEELEQLVCGSPVLDFEELEKVTQYDNGYHQDHRVIKDFWSIVHSMTLEEKKRLLFFSTGSDRSPIGGLGKLAFVITRHGEDSDRLPQAHTCFNHLLLPEYASREKLQERLMTAISNAEGFGM 694          
BLAST of EWM28462.1 vs. NCBI_GenBank
Match: gi|302810695|ref|XP_002987038.1| (hypothetical protein SELMODRAFT_125303, partial [Selaginella moellendorffii] >gi|300145203|gb|EFJ11881.1| hypothetical protein SELMODRAFT_125303, partial [Selaginella moellendorffii])

HSP 1 Score: 187.963 bits (476), Expect = 4.445e-55
Identity = 88/172 (51.16%), Postives = 121/172 (70.35%), Query Frame = 0
Query:    1 MEVTAENAREYVELYLLWVLEDSIKPHFEAFRKGFLKVCGGDALNLFHPQELEVLLCGAPHLDFHALEAAAQYEEPLNATSQLIKNFWKILHSFDETEKKLFLKFISGSDRAPIRGLGSMTFVISKHGDDSDRLPSAHTCFNHLLLPLYSSKEKLEAKLKAAMLNSEGFGVR 172
            ++VT EN + YV+LY+ ++LE SI   F AF++GFL+VCGG AL LF  +ELE+L+CG  H DF ALE    Y+      S +I+ FW ++      EKK  L F +G+DRAP+ GLGS+  +I ++GDD++RLP+AHTCFN LLLP YSS+EKL  +LK A+ NS GFG++
Sbjct:  173 VQVTGENKQRYVDLYVNYLLETSIATQFSAFKRGFLQVCGGPALRLFQYEELELLICGLRHYDFDALERGTTYKGGYTKDSNVIQWFWNLVKEMSVEEKKQLLFFTTGNDRAPVGGLGSLKLIIQRNGDDTERLPTAHTCFNILLLPEYSSQEKLADRLKLAISNSTGFGLQ 344          
The following BLAST results are available for this feature:
BLAST of EWM28462.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110870|gb|EWM28462.1|3.495e-160100.00hect e3 ubiquitin [Nannochloropsis gaditana][more]
gi|552839812|ref|XP_005849888.1|5.180e-6055.23hypothetical protein CHLNCDRAFT_21324 [Chlorella v... [more]
gi|813127447|ref|XP_012197348.1|1.087e-5855.56hypothetical protein SPRG_03381 [Saprolegnia paras... [more]
gi|168050969|ref|XP_001777929.1|5.844e-5852.33predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1173944861|gb|OQR93549.1|1.311e-5756.21HECT E3 ubiquitin ligase [Thraustotheca clavata][more]
gi|669170859|ref|XP_008620778.1|1.532e-5754.97hypothetical protein SDRG_16351 [Saprolegnia dicli... [more]
gi|1173943960|gb|OQR92752.1|2.621e-5653.25HECT E3 ubiquitin ligase [Achlya hypogyna][more]
gi|1026765386|gb|OAE26105.1|1.462e-5554.44hypothetical protein AXG93_4022s1170 [Marchantia p... [more]
gi|470527595|ref|XP_004357184.1|3.219e-5553.85o ubiquitin protein ligase E3A [Acanthamoeba caste... [more]
gi|302810695|ref|XP_002987038.1|4.445e-5551.16hypothetical protein SELMODRAFT_125303, partial [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2222rna2222Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications