rna2212, rna2212 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2212
Unique Name	rna2212
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2773
Alignment location	CM002458.1:1174290..1176417 -

Link to JBrowse

Properties


Property Name	Value
Product	Leucine-rich repeat, cysteine-containing subtype
Orig transcript id	gnl\|cribi\|Naga_100190g7.3117.mrna
Orig protein id	gnl\|cribi\|Naga_100190g7.3117
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:1174290..1176417 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100190g7	gene2115	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28466.1	cds2204	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2212	rna2212-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:1174290..1176417-
coding sequence from alignment at CM002458.1:1174290..1176417-

mRNA sequence

>rna2212 ID=rna2212|Name=rna2212|organism=Nannochloropsis gaditana|type=mRNA|length=2773bp
TATGTGCCGCTGGAAATCAAGAGGGCACCAGTGTTTCGCGCGGATTATTG
GATCTAGTCCCGCGAATCTCTAACAGGACCCTCGCAGATAAGCCATCAAA
ATGGCCTACGTGAAGCGCCTGTGGAAACGGGGCGTGCGTCGACAATCCTC
CTTCGAGACCAAGCCAAGGTCCGATTCTCAGACGCAGATCGATTTGCTCT
TGGAGCCGTCTTGTGCTCTGGCCAATGACGTCGACGGGCGCCCCCGTCTT
GTTCCTGGGAGCGAGGCGAGCAGCAGCAGGCATCAGCAGGACGACAGAAT
GCAGCAAGAAGCCCTGGTCGGGGCCTTGCAGACCACCGTGCTGGAACAAA
GTCGCAAGCTGAAAGACTTGAGCAGAAGCATCGACAGGTTGCACGCGGAG
AACCGGCGTGCTGGTCACCACATCGAAGCCTTGCGGAGCCTCCTTGGCCA
CGTGACAGGATGCGACCTGGGAGGGAGCGGGCCGGATTTCCAGATGGAGG
AAGTGCGCGAAACCGAGGAAAAGGAAGGGCGAATGCTCGCGTTGGAGGAC
GAGACTGCCCCTGTCTCCGATGATCAAGCCAGCGGCGTAACCAATATCGC
CAGCAGGGGCATCGCTCCGGGTGCGTTTTCCACGACCCAGGCCGCCATCA
GCGAAGAGGGCCCCGGCACTTCCCACGATATACAAGGTGTATACGCCTAT
TTGAGCAGCCTTGTGGCTTCCGCCACCTCGACGCTTTTCCCCTCTGTGGA
ACCGCTCGGTGGAAGCCTTGCCTCGGCCGCCTCATCCTCTTCCACCTCCT
ACGCCGACCTGCCCTCTCTGGCGTTTCCTGCCAGCACGGGGGCGGGCCCA
AGGAAGGGGGTACCTACCAGTGTGGAAGACACGCAAGCCTTGTTGATGGG
GCAGATATTGGAGAAGTTGCATTTGGCTGAGGACCGCTATGCTTTCCAGG
CCGAAGAAATCCATGCGTGCCACAAACGGCTGGAGGGTTTGGAGGAAGAA
GCGGCGGCTTTGCGGGCGGAAAAGCAACGGTACGAGCGCCTGCTTCTTGG
CTTGAAGAGGGAATTGACGGCCTACAAGAACAAGCTCCAGGCCCGTGACT
ACAAGGAAGCGACAATGGAGGTGGAAATCGACCGCTACCGGCACGAGAAA
CAGCGCATGACGCGCATGTTGAGCGAAGTGGTGGACAGCGCGGCGGCTTC
TTCGGCCCCTGCCTCCGCCACCAACACCCCGGGGTCTCAGGAGCTGGGGG
AGTTCTTCCCGCTGCCAGGGGCATCCCCCCTGGGGACGGGGCGGATGCGG
GCGCGTGTGGAAATGGCGGCTCTCCAGGCCGAGTTGGATGCGGCAAGGGC
GGTGTCGGAGGTAGAGGTGAGGAAGAGGGTGGCAGCAGAGCACGAACTGA
GCGTCTGGCGCAAGGCATTGGCGGAGTCAGGGCCCAGACTGTCGTCCGTG
CAGGGGAGCGCGGCAAGGCCCGGGGGGGGAGAGAGCGTGTCGGGGGAGGG
GAAGGGACCGGGAATAGGCGGGGTGGGCGGAGGGGGCCGAAGGGTGGAGG
ACAGGTGGAGCGGGGAGGAAGACGTGGAGGACAGGGAAGTGACGACCTTG
GTCATCAAAGAGCAGCTTTCCAGCCTGCGGGAACTGAACCCGGCTTTCCA
CGCGAGCTGGGGGGATGCCACGACCGAATGGAAGGTGCGAGGAAGGACCT
ACATGGCGGACGGGGTCAAGGTAGGGGGGCGGGCGGCCGAGCCACTCTGC
GAACTGGTGCACATGGAGCTTTTCGAGGTGGAGAGTGCCGGCCTTGTGCC
CCGGGCGGACCACGTCACGGCCCTCTTTCAGAGGAAAGACGGGGTCTACT
CGCGGTGTCAGCTTTTGGCCTCACAGCCCCCCCCGTTCTTGATCATTTTG
AACTTTCAAGTACCGGGAAATCCTCCGTGCAGCATGATGTGCTATTTTGC
TTTGTGTGGAGCGAGGAGGCAAGGTTTAGAGAAAGCGCGCGAAAGAGTGA
GAAGACGGAAAGCGAGGGAGGGGGCGGTGGCGGCAGCAGAGATTATTGGC
GAGGAGCAGGAGGAGGAAGAGGAGGAGGAGGAAGCAGAGGAGGAAGGGAT
GGAGGACCTGGGGGACGGGGAGTGTGTGCAGGAAAAGAGGGAAGAAAAGA
AATTTCTGCGGCTGCTTGCGGAATTTTTGGAAGGGGACGATGAGGAGAAG
AACCGGCGTTTCAAATTGATTCCGTCCATCATCGAAGGGCCCGCCTTGGT
GCGACTGATGGTTGGGAATAAGCCCGTTTTGCTCGGGAATAAGCTGACCC
AACGGTATTGGACAGGCCCCGGGTACTTGGAGATAGGGATCGATATAGGA
AGCTCCGCCATGGCCTCGCGGACGCTGGGTTTTGTGCGGGACGGGAGCAA
GAATGTGGTGGTGGAGTTGGCGGTCTTGGTCCAGGGGGAGGACGAGAAGG
AGTTGCCGGAGAAAGTGTTGGGCTCCCTGAGGAGTTCGCGACTGGACTGG
GGCCTGGCGGAAGGATTGAAAGGCCGATTGGAAGCGGCTGTCATCGCTCG
GACGCCCTCCGGCGAGACCTCCTAAAGAAAGGAAAGGACCGAGGGGCGAA
AAGGTGCGCGCGGAGAATGTATAGTGAGGCTTTCATTATGGGTATTTGTA
TGTCTTTGCCTATCAGATAGAATTACGTTGAGAGTGAAATACTTCTCACT
CACTGACTAGGGGGCAAGACTTAAATGGATAGGATGACCAGGAAGATACA
AAAGAATTACATATTTTAAGAAG

protein sequence of rna2212

>rna2212-protein ID=rna2212-protein|Name=rna2212|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MPPGAWAQKSFETAEMAEDVAGKRRESHAGPTTVAIAVQPKKRRRLSSRV
VYHQETSATTNGYTKSSIHTGGSCMNVEDKRCSQSSGRRLGSRLATGQST
APATFCMLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELD
LSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIR
ISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLR
HLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEAL
VGQPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDV
NERVHCAAVSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSV
EILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMVACS

mRNA from alignment at CM002458.1:1174290..1176417-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2212 ID=rna2212|Name=rna2212|organism=Nannochloropsis gaditana|type=mRNA|length=2128bp|location=Sequence derived from alignment at CM002458.1:1174290..1176417- (Nannochloropsis gaditana)
AGATAAATGCGTGCTTCTTCAGCACAGTCTTTGTCAAGCTTTTTGTGTGC
CAGAATTGTTTATATTCGAGCCTTTCAAAATTCTTTTCCCATTCCATCGC
CCGTTCCCGCTTTACCCAAAGGAAGGCAGGAGGTAAATTAGACCGCAACC
TGCCAAGACCAAGACAGTTGCCAATTACACATGCCACCCGGTGCTTGGGC
TCAAAAATCTTTTGAAACAGCAGAAATGGCAGAGGATGTCGCAGGCAAGC
GTCGAGAGTCGCATGCGGGTCCTACCACGGTGGCAATCGCCGTGCAACCC
AAAAAGAGACGGCGTCTCTCATCCCGCGTTGTCTATCATCAAGAGACATC
TGCCACAACCAATGGTTACACAAAATCGAGTATCCACACTGGGGGGTCAT
GTATGAACGTAGAAGATAAACGTTGCTCCCAAAGCAGTGGTCGCCGCTTG
GGCTCAAGGCTTGCTACGGGCCAATCCACCGCCCCCGCAACGTTTTGCAT
GCTACCCACTGACATCCAAGCACGTGTTCTCTACTCAGGCTATTTCAACT
CAGTCTATGTACTGACTAATTTGTCCTTGGTGAGCAAAGGCTGGCACGCG
ATGGCCTCGAAATGCTATCATGAGCTAGATTTGTCCCGGCTTCCGCACCT
GGATGACAACCACCTTTCGAGGATGGCCTCGCGCTTTCAGGGCGTGCACT
CCCTGGATCTCTCATTTTGTGACTCGGTGGGCGACTCCGTCACGATGGCA
CTCACACGTTGCAATACCACCCTGATTCGCATTAGCTTGCGGGGCTGTGG
CGTCTCGGATCAGGGGCTGCAGGAGATTTTCAGATTCACCCGTCTCGAGT
CCGTGGATGTATCCAAGCGCAAGCGGGATCAAAGCACTCTGTTGACCGAC
GACGGGCTGAGACCTCTGGCACATCTCAGGCACCTGCAAGAAGTGAACCT
AGCCTGGAACAGACTGATCACCGACGAGGGGGTGCGGATCCTACTCTCCC
CGGCCCCAGGCTCCAAACACCTCCGGGTCCTAGACCTGTCGTGCTGCGAG
CGCTTGACGGATGCCGCCTGCGAGGCCCTGGTAGGGCAGCCCTTGGAGGC
GTTATCGCTTTCAGGGTGTCCACAGATCACCGACCAGGCCCTTCGCATCC
TGTACGTGGACGGCTCTGGCAATGGCGACTCCTTTTTCTCCACTGGGCTG
CTCGAAATGCAGGCGTTCCCTCGCGACGTGAATGAGCGTGTCCATTGCGC
TGCAGTTTCCTACTCTTCTACCGCGTTACCTCAGACGGGAGACCGAGCGA
GGGTCGGCTCTCCGCAACCAGCCACAAGCCTTGTCTCCCTCTCATTAGCG
CACTGCCCGGCCTTAACCGACTTGAGCGTGGAAATTCTCCTCACCTTCTC
TCGCCTTCAGAGCTTGGACATGCGGGATTGCCGGGGACTGACCGAAAAAG
CCCGAAGCATGTTGCAAAAATGGCTCCCGGCGGCGATGGTGGCCTGCTCG
TGACCCCGGAGCAATGCACGGAGGGGGACAGGCCTCTGTCGAGCAGGGCC
AGAAGCTGCCTTTTAGGAGACCAAAAGACGTGGTCCCGAAAGCAGAACTT
GCAGGAGGCGGACCAAAAAGGCGCGGAAGGCACGCGGGCATGAAGGGTCC
GGTCATCGCAGGGGGATGTAAAAAGAGGGGCGTGGATAGGGCGGATCGGG
AGTCTGGTTGAAGGCCCATAATTTGGAGACCAGCATAATCGTAGATACCG
TAGAGGAATAGCATTAAGGGTGAAGAATCGTGCACATTTTCATGCATCAG
TCGTTGTATTTCCCGCTTATGTATCGATAGCACACAAGCGTCGAGTTTTT
GCGCACCCACACAAGCAAAAGCCAGAAATGCAAGCATGTCGCAGGTGGGA
GGCCGCGTGTAAGTTGATGCAGGGGCAATATTGACAAAAGCATCCACCAG
GTCATGGGCCATGCTTCTTAAAATATGTAATTCTTTTGTATCTTCCTGGT
CATCCTATCCATTTAAGTCTTGCCCCCTAGTCAGTGAGTGAGAAGTATTT
CACTCTCAACGTAATTCTATCTGATAGGCAAAGACATACAAATACCCATA
ATGAAAGCCTCACTATACATTCTCCGCG

Coding sequence (CDS) from alignment at CM002458.1:1174290..1176417-

>rna2212 ID=rna2212|Name=rna2212|organism=Nannochloropsis gaditana|type=CDS|length=1323bp|location=Sequence derived from alignment at CM002458.1:1174290..1176417- (Nannochloropsis gaditana)
ATGCCACCCGGTGCTTGGGCTCAAAAATCTTTTGAAACAGCAGAAATGGC
AGAGGATGTCGCAGGCAAGCGTCGAGAGTCGCATGCGGGTCCTACCACGG
TGGCAATCGCCGTGCAACCCAAAAAGAGACGGCGTCTCTCATCCCGCGTT
GTCTATCATCAAGAGACATCTGCCACAACCAATGGTTACACAAAATCGAG
TATCCACACTGGGGGGTCATGTATGAACGTAGAAGATAAACGTTGCTCCC
AAAGCAGTGGTCGCCGCTTGGGCTCAAGGCTTGCTACGGGCCAATCCACC
GCCCCCGCAACGTTTTGCATGCTACCCACTGACATCCAAGCACGTGTTCT
CTACTCAGGCTATTTCAACTCAGTCTATGTACTGACTAATTTGTCCTTGG
TGAGCAAAGGCTGGCACGCGATGGCCTCGAAATGCTATCATGAGCTAGAT
TTGTCCCGGCTTCCGCACCTGGATGACAACCACCTTTCGAGGATGGCCTC
GCGCTTTCAGGGCGTGCACTCCCTGGATCTCTCATTTTGTGACTCGGTGG
GCGACTCCGTCACGATGGCACTCACACGTTGCAATACCACCCTGATTCGC
ATTAGCTTGCGGGGCTGTGGCGTCTCGGATCAGGGGCTGCAGGAGATTTT
CAGATTCACCCGTCTCGAGTCCGTGGATGTATCCAAGCGCAAGCGGGATC
AAAGCACTCTGTTGACCGACGACGGGCTGAGACCTCTGGCACATCTCAGG
CACCTGCAAGAAGTGAACCTAGCCTGGAACAGACTGATCACCGACGAGGG
GGTGCGGATCCTACTCTCCCCGGCCCCAGGCTCCAAACACCTCCGGGTCC
TAGACCTGTCGTGCTGCGAGCGCTTGACGGATGCCGCCTGCGAGGCCCTG
GTAGGGCAGCCCTTGGAGGCGTTATCGCTTTCAGGGTGTCCACAGATCAC
CGACCAGGCCCTTCGCATCCTGTACGTGGACGGCTCTGGCAATGGCGACT
CCTTTTTCTCCACTGGGCTGCTCGAAATGCAGGCGTTCCCTCGCGACGTG
AATGAGCGTGTCCATTGCGCTGCAGTTTCCTACTCTTCTACCGCGTTACC
TCAGACGGGAGACCGAGCGAGGGTCGGCTCTCCGCAACCAGCCACAAGCC
TTGTCTCCCTCTCATTAGCGCACTGCCCGGCCTTAACCGACTTGAGCGTG
GAAATTCTCCTCACCTTCTCTCGCCTTCAGAGCTTGGACATGCGGGATTG
CCGGGGACTGACCGAAAAAGCCCGAAGCATGTTGCAAAAATGGCTCCCGG
CGGCGATGGTGGCCTGCTCGTGA

Synonyms

Publications