EWM28466.1, cds2204 (CDS) Nannochloropsis gaditana

Overview
NameEWM28466.1
Unique Namecds2204
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1174915..1176237 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28466.1
ProductLeucine-rich repeat, cysteine-containing subtype
Orig transcript idgnl|cribi|Naga_100190g7.3117.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1174915..1176237 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR006553Leu-rich_rpt_Cys-con_subtyp
Homology
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|585110876|gb|EWM28466.1| (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana])

HSP 1 Score: 903.279 bits (2333), Expect = 0.000e+0
Identity = 440/440 (100.00%), Postives = 440/440 (100.00%), Query Frame = 0
Query:    1 MPPGAWAQKSFETAEMAEDVAGKRRESHAGPTTVAIAVQPKKRRRLSSRVVYHQETSATTNGYTKSSIHTGGSCMNVEDKRCSQSSGRRLGSRLATGQSTAPATFCMLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMVACS 440
            MPPGAWAQKSFETAEMAEDVAGKRRESHAGPTTVAIAVQPKKRRRLSSRVVYHQETSATTNGYTKSSIHTGGSCMNVEDKRCSQSSGRRLGSRLATGQSTAPATFCMLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMVACS
Sbjct:    1 MPPGAWAQKSFETAEMAEDVAGKRRESHAGPTTVAIAVQPKKRRRLSSRVVYHQETSATTNGYTKSSIHTGGSCMNVEDKRCSQSSGRRLGSRLATGQSTAPATFCMLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMVACS 440          
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|46401201|emb|CAF24650.1| (conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25])

HSP 1 Score: 80.1073 bits (196), Expect = 2.273e-12
Identity = 89/294 (30.27%), Postives = 136/294 (46.26%), Query Frame = 0
Query:  148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCN--TTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVG-QPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALP-------QTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428
             L+LS    L D  L+ + +    +  LDLS C+ + D     LT  N  T L  ++L  C  +++ GL+ +   T L+ +++S+ ++     LTD GL  L  L  LQ+++L+W   +TD G   L +P  G   L+ LDLS C +LTDA    L     L+ L LS C ++TD  L  L             T L+ +Q        ++  A  ++ S  TAL        Q    A +    P T+L  L L +C  LTD  +  L   + LQ L++R C  LT+   + L
Sbjct:  373 HLNLSSCKKLTDAGLAHL-TPLMALQHLDLSICNKLTDR---GLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEK-----LTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHL-TPLTG---LQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL-------------TPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHL 640          

HSP 2 Score: 74.7146 bits (182), Expect = 1.253e-10
Identity = 93/319 (29.15%), Postives = 135/319 (42.32%), Query Frame = 0
Query:  148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGC--------------------------GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEAL---SLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALPQTG-------DRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428
             L+LSR  +L D  L+ + +   G+  LDLS C+   D+  +A     T L  + LRGC                           ++D GL  +   T L+ +++S+  +     LTD GL  LA L  LQ +NL+  + +TD G+  L +P    +HL   DLS C +LTD     L   PL AL   +LS C  IT+  L  L               L  +Q       E++  A + + +  TAL Q           A      P T L  L L+HC  LTD  +  L   + LQ LD+ +C  LT+   + L
Sbjct:  248 HLNLSRCKNLTDAGLAHL-TPLTGLQYLDLSHCNKFTDA-GLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNK-----LTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL-TPLMALQHL---DLSICNKLTDRGLTHL--NPLTALQYLNLSQCDNITNAGLEHL-------------IPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 540          
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|852803987|ref|XP_012890719.1| (PREDICTED: F-box/LRR-repeat protein 13 [Dipodomys ordii])

HSP 1 Score: 78.9518 bits (193), Expect = 4.887e-12
Identity = 55/156 (35.26%), Postives = 87/156 (55.77%), Query Frame = 0
Query:  172 VHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCG-VSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACE--ALVGQPLEALSLSGCPQITDQALRIL 324
            +  L+LS C  +GDS  + L    T L  +SLR CG ++DQGL+ I     L SVD+S       T++ ++GL  L+  + L+E++++    ITD G++      P    L  LD+S C +LTD   +  A+    L +LS++GCP+ITD  + +L
Sbjct:  526 IRELNLSNCVLLGDSSIVQLAERCTNLNYLSLRNCGHLTDQGLEYIVNIFSLVSVDIS------GTVICNEGLSILSRHKKLKELSISECYKITDVGIQGFCKNVP---FLEYLDVSHCTQLTDNIMKTVAIYCPQLTSLSIAGCPKITDAGIEML 672          
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|742761221|gb|KIC70805.1| (hypothetical protein DB44_FT00030 [Candidatus Protochlamydia amoebophila])

HSP 1 Score: 78.1814 bits (191), Expect = 9.099e-12
Identity = 89/294 (30.27%), Postives = 136/294 (46.26%), Query Frame = 0
Query:  148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCN--TTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVG-QPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALP-------QTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428
             L+LS    L D  L+ + +    +  LDLS C+ + D     LT  N  T L  ++L  C  +++ GL+ +   T L+ +++S+ ++     LTD GL  L  L  LQ+++L+W   +TD G   L +P  G   L+ LDLS C +LTDA    L     L+ L LS C ++TD  L  L             T L+ +Q        ++  A  ++ S  TAL        Q    A +    P T+L  L L +C  LTD  +  L   + LQ L++R C  LT+   + L
Sbjct:  412 HLNLSSCKKLTDAGLAHL-TPLMALQHLDLSICNKLTDR---GLTHLNPLTALQYLNLSQCDNITNAGLEHLNPLTALQYLNLSQCEK-----LTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHL-TPLTG---LQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL-------------TPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKFLTGLQYLNLRGCGYLTDAGLAHL 679          

HSP 2 Score: 75.8702 bits (185), Expect = 4.859e-11
Identity = 96/329 (29.18%), Postives = 144/329 (43.77%), Query Frame = 0
Query:  128 LTNLSLVSKGWHAMASKCYHELD--------LSRLPHLDDNHLSRMASR-------FQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEAL---SLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALPQTG-------DRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428
            L +L+L++   H   S+C +  D        L+ L +LD +H +++             +  LDL  CD + D+    LT     L  +SL  C  ++D GL  +   T L+ +++S+  +     LTD GL  LA L  LQ +NL+  + +TD G+  L +P    +HL   DLS C +LTD     L   PL AL   +LS C  IT+  L  L               L  +Q       E++  A + + +  TAL Q           A      P T L  L L+HC  LTD  +  L   + LQ LD+ +C  LT+   + L
Sbjct:  276 LEHLTLLTALQHLNLSRCKNFTDAGLAHLTPLTGLQYLDLSHCNKLTDAGLAYLEILTALQHLDLRGCDKIADAGLSHLTPL-VALQYLSLSQCWNLTDAGLIHLKTLTALQYLNLSRCNK-----LTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL-TPLMALQHL---DLSICNKLTDRGLTHL--NPLTALQYLNLSQCDNITNAGLEHL-------------NPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 579          
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|1101384664|dbj|GAU97501.1| (hypothetical protein RvY_08783 [Ramazzottius varieornatus])

HSP 1 Score: 77.411 bits (189), Expect = 1.009e-11
Identity = 101/398 (25.38%), Postives = 164/398 (41.21%), Query Frame = 0
Query:  107 MLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMAS---------------------------KC---YHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCG-VSDQGLQEIFR-FTRLESVDVSKRKRDQSTLLT---------------------DDGLRPLA-HLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQ--PLEALSLSGCPQITDQALRIL--------YVDGSGNGDSFFSTGLLEMQAFPRDVNERV---HCAAVSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMV 437
            MLP +I  R+     F  +  L   + V K W+ +A                            +C      L+L    HL D  L   A   + +  L L  C  + D    AL++ +  L ++++  C  ++D+GL  +    T LE++++S  +R     +T                     D+ LR L  +   L+ VNL     ITD+G++ L   A     L  + L+ C RLTD +  AL      L+ L ++GC ++ D+    L        Y+D         +T L+ +  F   V ER+   HC  +S         G  AR G+      L  L + +CP+++D S+  L T + LQ +D+ DC+G+T+ A   L+  LP A V
Sbjct:   56 MLPKEIILRIFS---FLDLVALCRCATVCKAWNGLAHDGSIWQDVDLFEFQRDVEGAVIENIARRCGLFLKRLNLRGCQHLSDEALKTFAFYCRNIEVLVLQECRKLTDETCRALSKHSPRLRKLNIDSCALITDKGLAVLADGCTHLETINISWCERISEQGITSLATRCTQLKTFTAKGCPNIKDECLRALGENCIELESVNLNSCADITDQGIKFL---AKNCYILEHISLAHCPRLTDDSLVALAHSCPKLKTLEVAGCTEMGDEGFSALCRACRFLQYLDMEECAHISDNT-LISIAEFCHSV-ERLCLSHCELISDEGVQALAQGAAARGGT------LKVLEVDNCPSISDASLTALATVTSLQRIDLYDCQGVTKPAVRQLKAKLPHAKV 439          
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|1169629248|ref|WP_080503368.1| (hypothetical protein [Candidatus Protochlamydia amoebophila])

HSP 1 Score: 77.7962 bits (190), Expect = 1.274e-11
Identity = 89/294 (30.27%), Postives = 136/294 (46.26%), Query Frame = 0
Query:  148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCN--TTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVG-QPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALP-------QTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428
             L+LS    L D  L+ + +    +  LDLS C+ + D     LT  N  T L  ++L  C  +++ GL+ +   T L+ +++S+ ++     LTD GL  L  L  LQ+++L+W   +TD G   L +P  G   L+ LDLS C +LTDA    L     L+ L LS C ++TD  L  L             T L+ +Q        ++  A  ++ S  TAL        Q    A +    P T+L  L L +C  LTD  +  L   + LQ L++R C  LT+   + L
Sbjct:  373 HLNLSSCKKLTDAGLAHL-TPLMALQHLDLSICNKLTDR---GLTHLNPLTALQYLNLSQCDNITNAGLEHLNPLTALQYLNLSQCEK-----LTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHL-TPLTG---LQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL-------------TPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKFLTGLQYLNLRGCGYLTDAGLAHL 640          

HSP 2 Score: 75.485 bits (184), Expect = 6.173e-11
Identity = 96/329 (29.18%), Postives = 144/329 (43.77%), Query Frame = 0
Query:  128 LTNLSLVSKGWHAMASKCYHELD--------LSRLPHLDDNHLSRMASR-------FQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEAL---SLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALPQTG-------DRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428
            L +L+L++   H   S+C +  D        L+ L +LD +H +++             +  LDL  CD + D+    LT     L  +SL  C  ++D GL  +   T L+ +++S+  +     LTD GL  LA L  LQ +NL+  + +TD G+  L +P    +HL   DLS C +LTD     L   PL AL   +LS C  IT+  L  L               L  +Q       E++  A + + +  TAL Q           A      P T L  L L+HC  LTD  +  L   + LQ LD+ +C  LT+   + L
Sbjct:  237 LEHLTLLTALQHLNLSRCKNFTDAGLAHLTPLTGLQYLDLSHCNKLTDAGLAYLEILTALQHLDLRGCDKIADAGLSHLTPL-VALQYLSLSQCWNLTDAGLIHLKTLTALQYLNLSRCNK-----LTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL-TPLMALQHL---DLSICNKLTDRGLTHL--NPLTALQYLNLSQCDNITNAGLEHL-------------NPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 540          
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|1132210653|ref|WP_075883579.1| (hypothetical protein [Candidatus Protochlamydia sp. W-9])

HSP 1 Score: 77.411 bits (189), Expect = 1.787e-11
Identity = 94/319 (29.47%), Postives = 138/319 (43.26%), Query Frame = 0
Query:  148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGC--------------------------GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEAL---SLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALPQTG-------DRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428
             L+LSR  +L D  L+ + +   G+  LDLS C+ + D+  +A     T L  + LRGC                           +SD GL  +   T L+ +++S+  +     +TD GL  LA L  LQ +NL+  + +TD G+  L +P    +HL   DLS C +LTD     L  +PL AL   +LS C  IT+  L  L             T L  +Q       E++  A + + +  TAL Q           A      P T L  L L+HC  LTD  +  L   + LQ LD+ +C  LT+   + L
Sbjct:  238 HLNLSRCKNLTDAGLAHL-TPLTGLQYLDLSHCNKLTDA-GLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVALQYLSLSQCWNLSDAGLIHLKPLTALQYLNLSRCNK-----ITDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL-TPLMALQHL---DLSICNKLTDRGLTHL--KPLTALQYLNLSQCDNITNAGLEHL-------------TPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 530          

HSP 2 Score: 74.7146 bits (182), Expect = 1.061e-10
Identity = 88/294 (29.93%), Postives = 135/294 (45.92%), Query Frame = 0
Query:  148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCN--TTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVG-QPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALP-------QTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428
             L+LS    L D  L+ + +    +  LDLS C+ + D     LT     T L  ++L  C  +++ GL+ +   T L+ +++S+ ++     LTD GL  L  L  LQ+++L+W   +TD G   L +P  G   L+ LDLS C +LTDA    L     L+ L LS C ++TD  L  L             T L+ +Q        ++  A  ++ S  TAL        Q    A +    P T+L  L L +C  LTD  +  L   + LQ L++R C  LT+   + L
Sbjct:  363 HLNLSSCKKLTDAGLAHL-TPLMALQHLDLSICNKLTDR---GLTHLKPLTALQYLNLSQCDNITNAGLEHLTPLTALQYLNLSQCEK-----LTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHL-TPLTG---LQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL-------------TPLMGLQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKFLTGLQYLNLRGCGYLTDAGLAHL 630          
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|667331267|ref|XP_008591532.1| (PREDICTED: F-box/LRR-repeat protein 13-like, partial [Galeopterus variegatus])

HSP 1 Score: 75.485 bits (184), Expect = 2.493e-11
Identity = 90/331 (27.19%), Postives = 139/331 (41.99%), Query Frame = 0
Query:  136 KGWHAMASKC--YHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEI----FRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQ--PLEALSLSGCPQITDQALR-------ILYVDGSGNGDSFFSTGLLEMQAFPR-------------DVNERVHCAA--------VSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEIL-LTFSRLQSLDMRDCRGLTEKARSMLQ 429
            +G+  +A+ C     L ++ +P L DN +  +  + Q + S+       + D    AL+ CN   IR          +G + I    F+F      ++S         +TD  L+ L  LR L  +NLA    I D G++  L   P S  +R L+L+ C +L D++   L  +   L  LSL  C   TDQ +        ++ VD SG G S  + GL+ +    +             D   +  C +        VSY     PQ  D          T+L SLS+A CP +TDL++E+L      L  LD+  C  LT++    LQ
Sbjct:    4 QGFRNIANSCTGIMHLTINDMPTLTDNCVKALVEKCQRITSIVFIGAPHISDRAFKALSTCNLRKIRF---------EGNKRITDACFKFIGRNYPNISHIYMVDCKGITDGSLKSLLPLRQLTMLNLANCARIGDMGLKQFLD-GPASIKIRELNLNNCIQLGDSSIVKLSERCPNLNYLSLRNCEHFTDQGIEYIVNIFSLISVDLSGTGIS--NEGLIILSRHKKLKELSLSECDRITDFGIQAFCKSSLILEYLDVSYC----PQLSDEVIKALAIYCTNLTSLSIAGCPKITDLAMEMLSAKCHYLHILDISGCVLLTDQTLEDLQ 318          
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|729405150|ref|XP_010555012.1| (PREDICTED: EIN3-binding F-box protein 2-like [Tarenaya hassleriana])

HSP 1 Score: 76.6406 bits (187), Expect = 2.815e-11
Identity = 99/349 (28.37%), Postives = 159/349 (45.56%), Query Frame = 0
Query:  110 TDIQARVLYSGYFN-SVYVLTNL-SLVSKGWHAMASKC--YHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCG-VSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHL-QEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEALSLSGCPQITDQAL-RILYVDGSG---NGDSFFSTGLLEMQAFPRDVNE------RVHCAAVSYSSTALPQTGDR-ARVGSPQPAT---SLVSLSLAHCPALTDLSVEILLTFS-RLQSLDMRDCRGLTEKARSMLQKWLPAAMV 437
            TD+  R +  G  +  V  L NL S+   G + +A  C    +LDLSR P + D  L+ +A     +  L +  C  +G+    A+ RC T L  IS+R C  + DQG+     F   ++     + + Q   +TD  L  L H   L  ++ L+  R ++++G  + +    G K L+ L +  C  +TD A EA VG        SGCP +    L + L V G G      S  S   L+++   R +N+       V+C     + + +   G R    GSP P+T   SL SLS+  CP   D S+ +L  F  +LQ +++    G+T+     L ++  A ++
Sbjct:  156 TDVGLRAIACGCPSLRVLSLWNLPSVGDSGLYEIAQSCPALEKLDLSRCPGITDKGLAAIADNCPNLIDLTIDSCSGLGNEGLKAIARCCTNLRSISIRNCSQIGDQGVA----FLLAQAAGSLNKVKLQMLNITDLSLAVLGHYGTLVADLVLSGLRGVSEKGFWV-MGNGKGLKKLKSLSVMSCLGMTDGALEA-VG--------SGCPDLKQVYLSKCLLVSGKGLVSLAKSALSLESLKLEECHR-INQFGFFGFLVNCGLKLKAFSVVNCLGIRDINPGSPLPSTYCSSLRSLSIHCCPGFGDSSLTLLGKFCHQLQEVELCGLSGVTDVGLLGLLQYNSAGLL 489          
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|560952192|ref|XP_006198627.1| (PREDICTED: F-box/LRR-repeat protein 13 [Vicugna pacos])

HSP 1 Score: 76.6406 bits (187), Expect = 2.967e-11
Identity = 53/158 (33.54%), Postives = 89/158 (56.33%), Query Frame = 0
Query:  170 QGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCG-VSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQ--PLEALSLSGCPQITDQALRIL 324
            + +  L+LS C  + D+    L+ C + L  +SLR C  ++D G++ I     L SVD+S       T +T++GL  L+  R L+E++L+    ITD G+++    +P  +H   LD+S C +L+D   +AL      L +LS++GCP+ITD  + +L
Sbjct:  549 KKIRELNLSNCIYLSDASIAKLSECCSNLNYLSLRNCEHLTDLGVEHIVNIFSLVSVDLS------GTDITNEGLMILSRHRQLKELSLSECDKITDVGIQLFCKGSPILEH---LDVSYCPQLSDDIIKALAIYCISLTSLSIAGCPKITDTGMEML 697          

HSP 2 Score: 63.1586 bits (152), Expect = 5.665e-7
Identity = 98/391 (25.06%), Postives = 164/391 (41.94%), Query Frame = 0
Query:   70 TGGSCMNVEDKRCSQSSGRRLGSRLATGQSTAPATFCMLPTD--IQARVLYSGYFNSVYV-LTNLSLVS-KGWHAMASKC--YHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEAL--VGQPLEALSLSGCPQITD-------QALRILYVDGSGNGDSFFSTGLLEMQAFPR-------------DVNERVHCAA--------VSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEIL-LTFSRLQSLDMRDCRGLTEK 423
            +G   +N+ +   +  + R L       Q+ + A +C   TD  +Q   L +G    +Y+ L+  + +S +G+  +A+ C     L ++ +P L DN +  +  +   + S+       + D    AL+ C+  L +I   G   + +   E F+       +++         +TD  L+ L+ L+ L  +NLA    I D G++  L   P SK +R L+LS C  L+DA+   L      L  LSL  C  +TD           ++ VD SG   +  + GL+ +    +             DV  ++ C          VSY     PQ  D           SL SLS+A CP +TD  +E+L      L  LD+  C  LT++
Sbjct:  341 SGVLYLNLSNTTITNRTMRLLPRHFHNLQNLSLA-YCRKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRNIANSCTGIMHLTINDMPTLTDNCVKALVEKCHRITSVVFIGAPHISDCTFKALSNCD--LRKIRFEG---NKRITDECFKLIDQNYPNINHIYMADCKGITDGSLKSLSPLKQLTVLNLANCVRIGDMGLKQFLD-GPASKKIRELNLSNCIYLSDASIAKLSECCSNLNYLSLRNCEHLTDLGVEHIVNIFSLVSVDLSGTDIT--NEGLMILSRHRQLKELSLSECDKITDVGIQLFCKGSPILEHLDVSYC----PQLSDDIIKALAIYCISLTSLSIAGCPKITDTGMEMLSAKCHYLHILDVSGCILLTDQ 718          
The following BLAST results are available for this feature:
BLAST of EWM28466.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110876|gb|EWM28466.1|0.000e+0100.00Leucine-rich repeat, cysteine-containing subtype [... [more]
gi|46401201|emb|CAF24650.1|2.273e-1230.27conserved hypothetical protein [Candidatus Protoch... [more]
gi|852803987|ref|XP_012890719.1|4.887e-1235.26PREDICTED: F-box/LRR-repeat protein 13 [Dipodomys ... [more]
gi|742761221|gb|KIC70805.1|9.099e-1230.27hypothetical protein DB44_FT00030 [Candidatus Prot... [more]
gi|1101384664|dbj|GAU97501.1|1.009e-1125.38hypothetical protein RvY_08783 [Ramazzottius varie... [more]
gi|1169629248|ref|WP_080503368.1|1.274e-1130.27hypothetical protein [Candidatus Protochlamydia am... [more]
gi|1132210653|ref|WP_075883579.1|1.787e-1129.47hypothetical protein [Candidatus Protochlamydia sp... [more]
gi|667331267|ref|XP_008591532.1|2.493e-1127.19PREDICTED: F-box/LRR-repeat protein 13-like, parti... [more]
gi|729405150|ref|XP_010555012.1|2.815e-1128.37PREDICTED: EIN3-binding F-box protein 2-like [Tare... [more]
gi|560952192|ref|XP_006198627.1|2.967e-1133.54PREDICTED: F-box/LRR-repeat protein 13 [Vicugna pa... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2212rna2212Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications