EWM28466.1, cds2204 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|585110876|gb|EWM28466.1| (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana]) HSP 1 Score: 903.279 bits (2333), Expect = 0.000e+0 Identity = 440/440 (100.00%), Postives = 440/440 (100.00%), Query Frame = 0 Query: 1 MPPGAWAQKSFETAEMAEDVAGKRRESHAGPTTVAIAVQPKKRRRLSSRVVYHQETSATTNGYTKSSIHTGGSCMNVEDKRCSQSSGRRLGSRLATGQSTAPATFCMLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMVACS 440 MPPGAWAQKSFETAEMAEDVAGKRRESHAGPTTVAIAVQPKKRRRLSSRVVYHQETSATTNGYTKSSIHTGGSCMNVEDKRCSQSSGRRLGSRLATGQSTAPATFCMLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMVACS Sbjct: 1 MPPGAWAQKSFETAEMAEDVAGKRRESHAGPTTVAIAVQPKKRRRLSSRVVYHQETSATTNGYTKSSIHTGGSCMNVEDKRCSQSSGRRLGSRLATGQSTAPATFCMLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMVACS 440
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|46401201|emb|CAF24650.1| (conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25]) HSP 1 Score: 80.1073 bits (196), Expect = 2.273e-12 Identity = 89/294 (30.27%), Postives = 136/294 (46.26%), Query Frame = 0 Query: 148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCN--TTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVG-QPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALP-------QTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428 L+LS L D L+ + + + LDLS C+ + D LT N T L ++L C +++ GL+ + T L+ +++S+ ++ LTD GL L L LQ+++L+W +TD G L +P G L+ LDLS C +LTDA L L+ L LS C ++TD L L T L+ +Q ++ A ++ S TAL Q A + P T+L L L +C LTD + L + LQ L++R C LT+ + L Sbjct: 373 HLNLSSCKKLTDAGLAHL-TPLMALQHLDLSICNKLTDR---GLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLNLSQCEK-----LTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHL-TPLTG---LQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL-------------TPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHL 640 HSP 2 Score: 74.7146 bits (182), Expect = 1.253e-10 Identity = 93/319 (29.15%), Postives = 135/319 (42.32%), Query Frame = 0 Query: 148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGC--------------------------GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEAL---SLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALPQTG-------DRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428 L+LSR +L D L+ + + G+ LDLS C+ D+ +A T L + LRGC ++D GL + T L+ +++S+ + LTD GL LA L LQ +NL+ + +TD G+ L +P +HL DLS C +LTD L PL AL +LS C IT+ L L L +Q E++ A + + + TAL Q A P T L L L+HC LTD + L + LQ LD+ +C LT+ + L Sbjct: 248 HLNLSRCKNLTDAGLAHL-TPLTGLQYLDLSHCNKFTDA-GLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNK-----LTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL-TPLMALQHL---DLSICNKLTDRGLTHL--NPLTALQYLNLSQCDNITNAGLEHL-------------IPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 540
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|852803987|ref|XP_012890719.1| (PREDICTED: F-box/LRR-repeat protein 13 [Dipodomys ordii]) HSP 1 Score: 78.9518 bits (193), Expect = 4.887e-12 Identity = 55/156 (35.26%), Postives = 87/156 (55.77%), Query Frame = 0 Query: 172 VHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCG-VSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACE--ALVGQPLEALSLSGCPQITDQALRIL 324 + L+LS C +GDS + L T L +SLR CG ++DQGL+ I L SVD+S T++ ++GL L+ + L+E++++ ITD G++ P L LD+S C +LTD + A+ L +LS++GCP+ITD + +L Sbjct: 526 IRELNLSNCVLLGDSSIVQLAERCTNLNYLSLRNCGHLTDQGLEYIVNIFSLVSVDIS------GTVICNEGLSILSRHKKLKELSISECYKITDVGIQGFCKNVP---FLEYLDVSHCTQLTDNIMKTVAIYCPQLTSLSIAGCPKITDAGIEML 672
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|742761221|gb|KIC70805.1| (hypothetical protein DB44_FT00030 [Candidatus Protochlamydia amoebophila]) HSP 1 Score: 78.1814 bits (191), Expect = 9.099e-12 Identity = 89/294 (30.27%), Postives = 136/294 (46.26%), Query Frame = 0 Query: 148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCN--TTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVG-QPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALP-------QTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428 L+LS L D L+ + + + LDLS C+ + D LT N T L ++L C +++ GL+ + T L+ +++S+ ++ LTD GL L L LQ+++L+W +TD G L +P G L+ LDLS C +LTDA L L+ L LS C ++TD L L T L+ +Q ++ A ++ S TAL Q A + P T+L L L +C LTD + L + LQ L++R C LT+ + L Sbjct: 412 HLNLSSCKKLTDAGLAHL-TPLMALQHLDLSICNKLTDR---GLTHLNPLTALQYLNLSQCDNITNAGLEHLNPLTALQYLNLSQCEK-----LTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHL-TPLTG---LQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL-------------TPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKFLTGLQYLNLRGCGYLTDAGLAHL 679 HSP 2 Score: 75.8702 bits (185), Expect = 4.859e-11 Identity = 96/329 (29.18%), Postives = 144/329 (43.77%), Query Frame = 0 Query: 128 LTNLSLVSKGWHAMASKCYHELD--------LSRLPHLDDNHLSRMASR-------FQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEAL---SLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALPQTG-------DRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428 L +L+L++ H S+C + D L+ L +LD +H +++ + LDL CD + D+ LT L +SL C ++D GL + T L+ +++S+ + LTD GL LA L LQ +NL+ + +TD G+ L +P +HL DLS C +LTD L PL AL +LS C IT+ L L L +Q E++ A + + + TAL Q A P T L L L+HC LTD + L + LQ LD+ +C LT+ + L Sbjct: 276 LEHLTLLTALQHLNLSRCKNFTDAGLAHLTPLTGLQYLDLSHCNKLTDAGLAYLEILTALQHLDLRGCDKIADAGLSHLTPL-VALQYLSLSQCWNLTDAGLIHLKTLTALQYLNLSRCNK-----LTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL-TPLMALQHL---DLSICNKLTDRGLTHL--NPLTALQYLNLSQCDNITNAGLEHL-------------NPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 579
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|1101384664|dbj|GAU97501.1| (hypothetical protein RvY_08783 [Ramazzottius varieornatus]) HSP 1 Score: 77.411 bits (189), Expect = 1.009e-11 Identity = 101/398 (25.38%), Postives = 164/398 (41.21%), Query Frame = 0 Query: 107 MLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMAS---------------------------KC---YHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCG-VSDQGLQEIFR-FTRLESVDVSKRKRDQSTLLT---------------------DDGLRPLA-HLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQ--PLEALSLSGCPQITDQALRIL--------YVDGSGNGDSFFSTGLLEMQAFPRDVNERV---HCAAVSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMV 437 MLP +I R+ F + L + V K W+ +A +C L+L HL D L A + + L L C + D AL++ + L ++++ C ++D+GL + T LE++++S +R +T D+ LR L + L+ VNL ITD+G++ L A L + L+ C RLTD + AL L+ L ++GC ++ D+ L Y+D +T L+ + F V ER+ HC +S G AR G+ L L + +CP+++D S+ L T + LQ +D+ DC+G+T+ A L+ LP A V Sbjct: 56 MLPKEIILRIFS---FLDLVALCRCATVCKAWNGLAHDGSIWQDVDLFEFQRDVEGAVIENIARRCGLFLKRLNLRGCQHLSDEALKTFAFYCRNIEVLVLQECRKLTDETCRALSKHSPRLRKLNIDSCALITDKGLAVLADGCTHLETINISWCERISEQGITSLATRCTQLKTFTAKGCPNIKDECLRALGENCIELESVNLNSCADITDQGIKFL---AKNCYILEHISLAHCPRLTDDSLVALAHSCPKLKTLEVAGCTEMGDEGFSALCRACRFLQYLDMEECAHISDNT-LISIAEFCHSV-ERLCLSHCELISDEGVQALAQGAAARGGT------LKVLEVDNCPSISDASLTALATVTSLQRIDLYDCQGVTKPAVRQLKAKLPHAKV 439
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|1169629248|ref|WP_080503368.1| (hypothetical protein [Candidatus Protochlamydia amoebophila]) HSP 1 Score: 77.7962 bits (190), Expect = 1.274e-11 Identity = 89/294 (30.27%), Postives = 136/294 (46.26%), Query Frame = 0 Query: 148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCN--TTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVG-QPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALP-------QTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428 L+LS L D L+ + + + LDLS C+ + D LT N T L ++L C +++ GL+ + T L+ +++S+ ++ LTD GL L L LQ+++L+W +TD G L +P G L+ LDLS C +LTDA L L+ L LS C ++TD L L T L+ +Q ++ A ++ S TAL Q A + P T+L L L +C LTD + L + LQ L++R C LT+ + L Sbjct: 373 HLNLSSCKKLTDAGLAHL-TPLMALQHLDLSICNKLTDR---GLTHLNPLTALQYLNLSQCDNITNAGLEHLNPLTALQYLNLSQCEK-----LTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHL-TPLTG---LQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL-------------TPLMALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKFLTGLQYLNLRGCGYLTDAGLAHL 640 HSP 2 Score: 75.485 bits (184), Expect = 6.173e-11 Identity = 96/329 (29.18%), Postives = 144/329 (43.77%), Query Frame = 0 Query: 128 LTNLSLVSKGWHAMASKCYHELD--------LSRLPHLDDNHLSRMASR-------FQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEAL---SLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALPQTG-------DRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428 L +L+L++ H S+C + D L+ L +LD +H +++ + LDL CD + D+ LT L +SL C ++D GL + T L+ +++S+ + LTD GL LA L LQ +NL+ + +TD G+ L +P +HL DLS C +LTD L PL AL +LS C IT+ L L L +Q E++ A + + + TAL Q A P T L L L+HC LTD + L + LQ LD+ +C LT+ + L Sbjct: 237 LEHLTLLTALQHLNLSRCKNFTDAGLAHLTPLTGLQYLDLSHCNKLTDAGLAYLEILTALQHLDLRGCDKIADAGLSHLTPL-VALQYLSLSQCWNLTDAGLIHLKTLTALQYLNLSRCNK-----LTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL-TPLMALQHL---DLSICNKLTDRGLTHL--NPLTALQYLNLSQCDNITNAGLEHL-------------NPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 540
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|1132210653|ref|WP_075883579.1| (hypothetical protein [Candidatus Protochlamydia sp. W-9]) HSP 1 Score: 77.411 bits (189), Expect = 1.787e-11 Identity = 94/319 (29.47%), Postives = 138/319 (43.26%), Query Frame = 0 Query: 148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGC--------------------------GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEAL---SLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALPQTG-------DRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428 L+LSR +L D L+ + + G+ LDLS C+ + D+ +A T L + LRGC +SD GL + T L+ +++S+ + +TD GL LA L LQ +NL+ + +TD G+ L +P +HL DLS C +LTD L +PL AL +LS C IT+ L L T L +Q E++ A + + + TAL Q A P T L L L+HC LTD + L + LQ LD+ +C LT+ + L Sbjct: 238 HLNLSRCKNLTDAGLAHL-TPLTGLQYLDLSHCNKLTDA-GLAYLEILTALQHLDLRGCDKITDAGLSHLTPLVALQYLSLSQCWNLSDAGLIHLKPLTALQYLNLSRCNK-----ITDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL-TPLMALQHL---DLSICNKLTDRGLTHL--KPLTALQYLNLSQCDNITNAGLEHL-------------TPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 530 HSP 2 Score: 74.7146 bits (182), Expect = 1.061e-10 Identity = 88/294 (29.93%), Postives = 135/294 (45.92%), Query Frame = 0 Query: 148 ELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCN--TTLIRISLRGC-GVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVG-QPLEALSLSGCPQITDQALRILYVDGSGNGDSFFSTGLLEMQAFPRDVNERVHCAAVSYSS--TALP-------QTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSML 428 L+LS L D L+ + + + LDLS C+ + D LT T L ++L C +++ GL+ + T L+ +++S+ ++ LTD GL L L LQ+++L+W +TD G L +P G L+ LDLS C +LTDA L L+ L LS C ++TD L L T L+ +Q ++ A ++ S TAL Q A + P T+L L L +C LTD + L + LQ L++R C LT+ + L Sbjct: 363 HLNLSSCKKLTDAGLAHL-TPLMALQHLDLSICNKLTDR---GLTHLKPLTALQYLNLSQCDNITNAGLEHLTPLTALQYLNLSQCEK-----LTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHL-TPLTG---LQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL-------------TPLMGLQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKFLTGLQYLNLRGCGYLTDAGLAHL 630
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|667331267|ref|XP_008591532.1| (PREDICTED: F-box/LRR-repeat protein 13-like, partial [Galeopterus variegatus]) HSP 1 Score: 75.485 bits (184), Expect = 2.493e-11 Identity = 90/331 (27.19%), Postives = 139/331 (41.99%), Query Frame = 0 Query: 136 KGWHAMASKC--YHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEI----FRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQ--PLEALSLSGCPQITDQALR-------ILYVDGSGNGDSFFSTGLLEMQAFPR-------------DVNERVHCAA--------VSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEIL-LTFSRLQSLDMRDCRGLTEKARSMLQ 429 +G+ +A+ C L ++ +P L DN + + + Q + S+ + D AL+ CN IR +G + I F+F ++S +TD L+ L LR L +NLA I D G++ L P S +R L+L+ C +L D++ L + L LSL C TDQ + ++ VD SG G S + GL+ + + D + C + VSY PQ D T+L SLS+A CP +TDL++E+L L LD+ C LT++ LQ Sbjct: 4 QGFRNIANSCTGIMHLTINDMPTLTDNCVKALVEKCQRITSIVFIGAPHISDRAFKALSTCNLRKIRF---------EGNKRITDACFKFIGRNYPNISHIYMVDCKGITDGSLKSLLPLRQLTMLNLANCARIGDMGLKQFLD-GPASIKIRELNLNNCIQLGDSSIVKLSERCPNLNYLSLRNCEHFTDQGIEYIVNIFSLISVDLSGTGIS--NEGLIILSRHKKLKELSLSECDRITDFGIQAFCKSSLILEYLDVSYC----PQLSDEVIKALAIYCTNLTSLSIAGCPKITDLAMEMLSAKCHYLHILDISGCVLLTDQTLEDLQ 318
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|729405150|ref|XP_010555012.1| (PREDICTED: EIN3-binding F-box protein 2-like [Tarenaya hassleriana]) HSP 1 Score: 76.6406 bits (187), Expect = 2.815e-11 Identity = 99/349 (28.37%), Postives = 159/349 (45.56%), Query Frame = 0 Query: 110 TDIQARVLYSGYFN-SVYVLTNL-SLVSKGWHAMASKC--YHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCG-VSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHL-QEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEALSLSGCPQITDQAL-RILYVDGSG---NGDSFFSTGLLEMQAFPRDVNE------RVHCAAVSYSSTALPQTGDR-ARVGSPQPAT---SLVSLSLAHCPALTDLSVEILLTFS-RLQSLDMRDCRGLTEKARSMLQKWLPAAMV 437 TD+ R + G + V L NL S+ G + +A C +LDLSR P + D L+ +A + L + C +G+ A+ RC T L IS+R C + DQG+ F ++ + + Q +TD L L H L ++ L+ R ++++G + + G K L+ L + C +TD A EA VG SGCP + L + L V G G S S L+++ R +N+ V+C + + + G R GSP P+T SL SLS+ CP D S+ +L F +LQ +++ G+T+ L ++ A ++ Sbjct: 156 TDVGLRAIACGCPSLRVLSLWNLPSVGDSGLYEIAQSCPALEKLDLSRCPGITDKGLAAIADNCPNLIDLTIDSCSGLGNEGLKAIARCCTNLRSISIRNCSQIGDQGVA----FLLAQAAGSLNKVKLQMLNITDLSLAVLGHYGTLVADLVLSGLRGVSEKGFWV-MGNGKGLKKLKSLSVMSCLGMTDGALEA-VG--------SGCPDLKQVYLSKCLLVSGKGLVSLAKSALSLESLKLEECHR-INQFGFFGFLVNCGLKLKAFSVVNCLGIRDINPGSPLPSTYCSSLRSLSIHCCPGFGDSSLTLLGKFCHQLQEVELCGLSGVTDVGLLGLLQYNSAGLL 489
BLAST of EWM28466.1 vs. NCBI_GenBank
Match: gi|560952192|ref|XP_006198627.1| (PREDICTED: F-box/LRR-repeat protein 13 [Vicugna pacos]) HSP 1 Score: 76.6406 bits (187), Expect = 2.967e-11 Identity = 53/158 (33.54%), Postives = 89/158 (56.33%), Query Frame = 0 Query: 170 QGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCG-VSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQ--PLEALSLSGCPQITDQALRIL 324 + + L+LS C + D+ L+ C + L +SLR C ++D G++ I L SVD+S T +T++GL L+ R L+E++L+ ITD G+++ +P +H LD+S C +L+D +AL L +LS++GCP+ITD + +L Sbjct: 549 KKIRELNLSNCIYLSDASIAKLSECCSNLNYLSLRNCEHLTDLGVEHIVNIFSLVSVDLS------GTDITNEGLMILSRHRQLKELSLSECDKITDVGIQLFCKGSPILEH---LDVSYCPQLSDDIIKALAIYCISLTSLSIAGCPKITDTGMEML 697 HSP 2 Score: 63.1586 bits (152), Expect = 5.665e-7 Identity = 98/391 (25.06%), Postives = 164/391 (41.94%), Query Frame = 0 Query: 70 TGGSCMNVEDKRCSQSSGRRLGSRLATGQSTAPATFCMLPTD--IQARVLYSGYFNSVYV-LTNLSLVS-KGWHAMASKC--YHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEAL--VGQPLEALSLSGCPQITD-------QALRILYVDGSGNGDSFFSTGLLEMQAFPR-------------DVNERVHCAA--------VSYSSTALPQTGDRARVGSPQPATSLVSLSLAHCPALTDLSVEIL-LTFSRLQSLDMRDCRGLTEK 423 +G +N+ + + + R L Q+ + A +C TD +Q L +G +Y+ L+ + +S +G+ +A+ C L ++ +P L DN + + + + S+ + D AL+ C+ L +I G + + E F+ +++ +TD L+ L+ L+ L +NLA I D G++ L P SK +R L+LS C L+DA+ L L LSL C +TD ++ VD SG + + GL+ + + DV ++ C VSY PQ D SL SLS+A CP +TD +E+L L LD+ C LT++ Sbjct: 341 SGVLYLNLSNTTITNRTMRLLPRHFHNLQNLSLA-YCRKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRNIANSCTGIMHLTINDMPTLTDNCVKALVEKCHRITSVVFIGAPHISDCTFKALSNCD--LRKIRFEG---NKRITDECFKLIDQNYPNINHIYMADCKGITDGSLKSLSPLKQLTVLNLANCVRIGDMGLKQFLD-GPASKKIRELNLSNCIYLSDASIAKLSECCSNLNYLSLRNCEHLTDLGVEHIVNIFSLVSVDLSGTDIT--NEGLMILSRHRQLKELSLSECDKITDVGIQLFCKGSPILEHLDVSYC----PQLSDDIIKALAIYCISLTSLSIAGCPKITDTGMEMLSAKCHYLHILDVSGCILLTDQ 718 The following BLAST results are available for this feature:
BLAST of EWM28466.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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