EWM28506.1, cds2174 (CDS) Nannochloropsis gaditana

Overview
NameEWM28506.1
Unique Namecds2174
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1090788..1091001 -
Alignment locationCM002458.1:1089009..1090582 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28506.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100058g9.4273.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1090788..1091001 -
CM002458.1supercontigCM002458.1:1089009..1090582 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28506.1 vs. NCBI_GenBank
Match: gi|585110922|gb|EWM28506.1| (hypothetical protein Naga_100058g9 [Nannochloropsis gaditana])

HSP 1 Score: 1195.65 bits (3092), Expect = 0.000e+0
Identity = 595/595 (100.00%), Postives = 595/595 (100.00%), Query Frame = 0 
Query:    1 MEWKALSTLGTAKRGRHTEGGRTGNAVGAPAAQRTVSKTCLAIALTISVLIRIEAEARKAAGPCLFLPPLQGSFRNCDMTVQPFIIASCPFFLRCTSGIRSTPKVRTWHSRRDLAMKGEGDAKRVSDFPFRIFAFGKKKKTAAVKEPPPGSKNINKQSKRRKPSAKEDKGGRGFFSIIDTGRADRNSPKPAGRGKGRRGKKDGQTGWFSSLLYPWSGFAAFNTEWKEQMVLAKRIKKLEKEVARDSTRGQRAKVAQYRYDALKTLEEVEAARAGRSSGEGGSFDPALAGKSRKSLQLEVEDAMLLRQSPSAKPSGSKAGAKKGLGPGGEVLVRPEDADGLLHQLEASAKSEQRWARLASAGIGASLGVALLPSHDVWAGMVGGGLAAFLTTTPGIVGDATRMAGYSAVSVGKAASALEQKCAVLDKLRGTLWKKSEASGPFLRFEFPFLASWRNAYGGEGFLHPGIRPAPPMRDAQYVEYLQEVKRWVEVEEQEVLQALRRKEDERVRDVMEREERRERMQQVVGGLWQGGAAAATKLKTLLVSSATEGGKEGRWEEPGGEGGMEDDLAFLKRFSDLDVKAGRTGRAWEEGLAKE 595
            MEWKALSTLGTAKRGRHTEGGRTGNAVGAPAAQRTVSKTCLAIALTISVLIRIEAEARKAAGPCLFLPPLQGSFRNCDMTVQPFIIASCPFFLRCTSGIRSTPKVRTWHSRRDLAMKGEGDAKRVSDFPFRIFAFGKKKKTAAVKEPPPGSKNINKQSKRRKPSAKEDKGGRGFFSIIDTGRADRNSPKPAGRGKGRRGKKDGQTGWFSSLLYPWSGFAAFNTEWKEQMVLAKRIKKLEKEVARDSTRGQRAKVAQYRYDALKTLEEVEAARAGRSSGEGGSFDPALAGKSRKSLQLEVEDAMLLRQSPSAKPSGSKAGAKKGLGPGGEVLVRPEDADGLLHQLEASAKSEQRWARLASAGIGASLGVALLPSHDVWAGMVGGGLAAFLTTTPGIVGDATRMAGYSAVSVGKAASALEQKCAVLDKLRGTLWKKSEASGPFLRFEFPFLASWRNAYGGEGFLHPGIRPAPPMRDAQYVEYLQEVKRWVEVEEQEVLQALRRKEDERVRDVMEREERRERMQQVVGGLWQGGAAAATKLKTLLVSSATEGGKEGRWEEPGGEGGMEDDLAFLKRFSDLDVKAGRTGRAWEEGLAKE
Sbjct:    1 MEWKALSTLGTAKRGRHTEGGRTGNAVGAPAAQRTVSKTCLAIALTISVLIRIEAEARKAAGPCLFLPPLQGSFRNCDMTVQPFIIASCPFFLRCTSGIRSTPKVRTWHSRRDLAMKGEGDAKRVSDFPFRIFAFGKKKKTAAVKEPPPGSKNINKQSKRRKPSAKEDKGGRGFFSIIDTGRADRNSPKPAGRGKGRRGKKDGQTGWFSSLLYPWSGFAAFNTEWKEQMVLAKRIKKLEKEVARDSTRGQRAKVAQYRYDALKTLEEVEAARAGRSSGEGGSFDPALAGKSRKSLQLEVEDAMLLRQSPSAKPSGSKAGAKKGLGPGGEVLVRPEDADGLLHQLEASAKSEQRWARLASAGIGASLGVALLPSHDVWAGMVGGGLAAFLTTTPGIVGDATRMAGYSAVSVGKAASALEQKCAVLDKLRGTLWKKSEASGPFLRFEFPFLASWRNAYGGEGFLHPGIRPAPPMRDAQYVEYLQEVKRWVEVEEQEVLQALRRKEDERVRDVMEREERRERMQQVVGGLWQGGAAAATKLKTLLVSSATEGGKEGRWEEPGGEGGMEDDLAFLKRFSDLDVKAGRTGRAWEEGLAKE 595
The following BLAST results are available for this feature:
BLAST of EWM28506.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110922|gb|EWM28506.1|0.000e+0100.00hypothetical protein Naga_100058g9 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2182rna2182Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications