EWM28491.1, cds2167 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|585110907|gb|EWM28491.1| (ribosome biogenesis gtp-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 805.823 bits (2080), Expect = 0.000e+0 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0 Query: 1 MRGCLVPGLAMPFISFTIVVITLMSSTQVFGCGPKSMRCFLAGPSTLSRTRRRGCSTSASQLRPLRAGSGSSDDGPFKAKREKLQKEKDKLAALMAKQEREAVKKYMETQAKKERESQAKIRQAQEFMAQRAKGGGKDAPWSKGGDDSTQSIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGEYLDLSEEAANDRAKTEEGEGV 391 MRGCLVPGLAMPFISFTIVVITLMSSTQVFGCGPKSMRCFLAGPSTLSRTRRRGCSTSASQLRPLRAGSGSSDDGPFKAKREKLQKEKDKLAALMAKQEREAVKKYMETQAKKERESQAKIRQAQEFMAQRAKGGGKDAPWSKGGDDSTQSIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGEYLDLSEEAANDRAKTEEGEGV Sbjct: 1 MRGCLVPGLAMPFISFTIVVITLMSSTQVFGCGPKSMRCFLAGPSTLSRTRRRGCSTSASQLRPLRAGSGSSDDGPFKAKREKLQKEKDKLAALMAKQEREAVKKYMETQAKKERESQAKIRQAQEFMAQRAKGGGKDAPWSKGGDDSTQSIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGEYLDLSEEAANDRAKTEEGEGV 391
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|873240688|emb|CEL93180.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 181.8 bits (460), Expect = 5.642e-49 Identity = 126/304 (41.45%), Postives = 169/304 (55.59%), Query Frame = 0 Query: 97 KQEREAVKKYMETQAKK---------ERESQAKIRQAQEFMA-QRAKGGGKDAPWSKGGDDSTQSIPKKKA--RNFQQI----------SLTCRQFSIDDIQDVTFEGSHLD--DVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVV--SKTPGRTQQINLFKVHD--SNGPVSVLVDLPGYGYAK-LPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGEY 371 + E + +KKY A+K E E +AK + Q +A QR + DA S D S P KA + Q I ++ R F +D+ V+F G + D D+P GLPEVA GRSNVGKSS+LN L + A V SKTPGRTQQINLF++ D G V VLVDLPGYGY + + K I + + YL R LRL +LL+D+R Q+ D +++ R+ ++P LV ATKVD+LK + + NL RL + +LP PV FSS+TG N +W AI DAC+G+Y Sbjct: 19 RHESKLIKKYKAKVARKTARGQSRQQEAEKRAKEQSRQRRLARQRKQSSATDASTSPH-DTPEASSPSAKAVPKGLQFIEAVEVSGGSSAVEVRPFEREDVGAVSFIGGYEDSRDLPATGLPEVAFLGRSNVGKSSMLNSLQSRASERAEVRISKTPGRTQQINLFRLSDRRKRGLV-VLVDLPGYGYTRSISKEDTKKIRSFLLAYLRKRAELRLFLLLVDSRLPAQEVDADVLANLRSMDVPYLVAATKVDRLKASERDANLARLREELQLPSWQPVPFSSMTGENGPLLWRAISDACIGQY 320
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|922866531|gb|KOO33370.1| (ribosome biogenesis gtp-binding protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 171.014 bits (432), Expect = 4.178e-48 Identity = 89/182 (48.90%), Postives = 118/182 (64.84%), Query Frame = 0 Query: 188 VPFLGLPEVAVFGRSNVGKSSLLNCLAG-INKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACV 368 +P L LPE + GRSNVGKSS LN LAG NKK+A VSKTPG T+ INL+++ G V + DLPGYGYAK+ K +Q D Q+ Y+ R L+LAVL +DA+R+PQ+SD ++ + A LV+ATK DKL + ++ +L L + LP P+A SSVTG+ KR VW AI + C Sbjct: 1 MPSLRLPEFTLAGRSNVGKSSALNTLAGRPNKKIAKVSKTPGSTRLINLYRL----GNVCTITDLPGYGYAKVSKEMQDDWRKQIEAYMRRREELKLAVLFVDAQRDPQESDAQLLDFLEAEAKSTLVVATKADKLAKQALQSSLEYLRESLALPSDQPIALSSVTGLGKREVWGAINEICT 178
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|299115211|emb|CBN74042.1| (YihA6, YihA/EngB-like GTPase [Ectocarpus siliculosus]) HSP 1 Score: 174.866 bits (442), Expect = 1.448e-46 Identity = 105/240 (43.75%), Postives = 140/240 (58.33%), Query Frame = 0 Query: 139 APWSKGGD-DSTQSIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDD---VPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGP-VSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAAN---IPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGE 370 AP + GD Q P K RN + +F +DI+ V F GS+ D P LPE+A GRSNVGKSS+LN L G + VA VSKTPGRT++IN+FK + N V DLPGYGYAK+ K Q I + YL R L+L +LL D+RREP SD +++Y +L++ATKVDKL + N+ RL + F+LP G+PV+FS++TG K+ +WS IR A + Sbjct: 224 APRGRVGDPQDDQDGPGKAGRNPFKKEKIVSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG--EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAAAAQ 461
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|551572243|ref|XP_005771968.1| (GTP-binding protein engB [Emiliania huxleyi CCMP1516] >gi|485623326|gb|EOD19539.1| GTP-binding protein engB [Emiliania huxleyi CCMP1516]) HSP 1 Score: 163.696 bits (413), Expect = 4.848e-45 Identity = 88/199 (44.22%), Postives = 120/199 (60.30%), Query Frame = 0 Query: 174 DIQDVTFEGSHLDD--VPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGE 370 D VTF S D +PF LPEV + GRSNVGKSS LN L+G K+VA VSKTPGRT+ INLF V G + DLPGYG+AK+ LQ + V YL R LR AV+ +D++REPQ D ++ + IP +V+ATKVDK++ ++ + L + LP P+ FSS TGV ++ +W +++ C+ E Sbjct: 8 DRSGVTFVNSFADPRGMPFSPLPEVTLVGRSNVGKSSALNALSGRRKRVAQVSKTPGRTRLINLFSV----GSALTVTDLPGYGFAKVSAELQEEWRRNVEAYLRQRENLRAAVVFIDSQREPQAVDAQILDFLAFHEIPSVVVATKVDKVRPSQLDNCMAALRRGLALPPDQPIPFSSTTGVGRKELWQYLQEICLAE 202
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|551676106|ref|XP_005840807.1| (hypothetical protein GUITHDRAFT_64138 [Guillardia theta CCMP2712] >gi|428184973|gb|EKX53827.1| hypothetical protein GUITHDRAFT_64138 [Guillardia theta CCMP2712]) HSP 1 Score: 152.91 bits (385), Expect = 1.084e-40 Identity = 80/187 (42.78%), Postives = 114/187 (60.96%), Query Frame = 0 Query: 180 FEGSHLDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDA 366 F GS + P L +PEVA GRSNVGKSS+LNCL G K+AV SKTPGRT++INLF D+ G +VDLPG GYAK+ K ++ + ++ +Y+ R L+L V+L+D R EPQ+ D+ + + +P +++ TK DKL + +IE + + + G ++FSS TG K VW I A Sbjct: 7 FLGSFDGEPPLLPVPEVAFAGRSNVGKSSMLNCLTG--SKLAVTSKTPGRTRRINLFVHKDNTGRALGIVDLPGLGYAKMSKGIKEKLSDEITQYIKTREALKLLVILIDPRLEPQEQDVLLAELCLDKKLPFVMVGTKADKLSNNEIEIAFSKYEEAIGIGTGQLISFSSKTGEGKAFVWKQINQA 191
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|1081631552|emb|SCY70054.1| (GTP-binding protein [Desulfoluna spongiiphila]) HSP 1 Score: 149.443 bits (376), Expect = 1.283e-39 Identity = 76/181 (41.99%), Postives = 111/181 (61.33%), Query Frame = 0 Query: 185 LDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRD 365 +D P L LPE+A GRSNVGKSSL+N L K++ S TPGRTQ +N F ++D VDLPGYGYAK PK + + G V RYL++R +L+ A+LL+D RR P++ + N++++FRA IP V+ TK DK + + N+ R+ + L + FS+++ + VW AI + Sbjct: 15 VDQYPELRLPEIAFAGRSNVGKSSLINVLVN-RKRLVKTSSTPGRTQLVNFFDINDE----ITFVDLPGYGYAKAPKRVVREWGPMVERYLAERRSLKGALLLIDIRRSPREDEFNLIEWFRAHGIPFRVVLTKADKFSNNKRQSNVSRIAKELGLKSSEMIVFSALSRSGREEVWQAITE 190
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|1088607142|gb|OHE23399.1| (YihA family ribosome biogenesis GTP-binding protein [Syntrophobacterales bacterium RBG_19FT_COMBO_59_10]) HSP 1 Score: 141.739 bits (356), Expect = 9.931e-37 Identity = 75/181 (41.44%), Postives = 111/181 (61.33%), Query Frame = 0 Query: 189 PFLGLPEVAVFGRSNVGKSSLLNCLAGINKK-VAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMP-VAFSSVTGVNKRAVWSAIRDAC 367 P LPE+A GRSNVGKSSL+N L +N++ +A S TPGRTQ+IN F V++ VDLPGYGYAK+P+A++ G + YL +R TLRL VL++D RR+P DL ++++ + +P ++ TK+DK+ + + + + LP P +AFS+ TG K +W I+ A Sbjct: 19 PPASLPEIAFAGRSNVGKSSLINTL--LNRRGLARTSNTPGRTQEINFFTVNNR----VAFVDLPGYGYAKVPEAIRRHWGPMIETYLRERQTLRLVVLILDVRRDPSGEDLQLIRWLQFYRLPSHIVLTKIDKMSRNQLAQRQRLIGERLGLPAAEPLLAFSAKTGAGKERLWREIKKAM 193
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|1085224377|gb|OGU07884.1| (YihA family ribosome biogenesis GTP-binding protein [Geobacteraceae bacterium GWC2_55_20]) HSP 1 Score: 141.739 bits (356), Expect = 1.031e-36 Identity = 81/177 (45.76%), Postives = 105/177 (59.32%), Query Frame = 0 Query: 187 DVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAI 363 D P GLPEVA GRSNVGKSSL+N LAG K + S TPGRTQ IN F D NG + LVDLPGYGYAK P AL+ G + YLS R +L+ VL++D RR P DL M+++ NIP +++ TK DKL + + + K GM + FS+++ + +WS I Sbjct: 17 DYPPPGLPEVAFVGRSNVGKSSLINVLAG-RKGLVRTSSTPGRTQLINFF---DING-ILTLVDLPGYGYAKAPPALRKQWGPMIESYLSLRESLKAVVLILDIRRVPSDGDLQMLRWLEMYNIPPIIVLTKCDKLSKNEQAKQKTVIAAAIKRDKGMLLPFSALSRDGRDGIWSEI 188
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|1056547876|ref|WP_067980310.1| (GTP-binding protein [Aerococcus urinaehominis] >gi|984726252|gb|AMB99810.1| GTP-binding protein [Aerococcus urinaehominis] >gi|1086102147|emb|SDM60251.1| GTP-binding protein [Aerococcus urinaehominis]) HSP 1 Score: 141.354 bits (355), Expect = 1.306e-36 Identity = 75/180 (41.67%), Postives = 106/180 (58.89%), Query Frame = 0 Query: 193 LPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKL-PVGMPVAFSSVTGVNKRAVWSAIRDACVGEY 371 LPE+A+ GRSNVGKSS +N L G KK+A S PG+TQQ+N +++ D+ LVD+PGYGYAK+ K + + RY R L L++D R EPQK+D+ M ++F A NIP V+ATK DK+K ++L ++++ L + + FSS TG + W I GEY Sbjct: 25 LPEIALAGRSNVGKSSFINKLIG-RKKLARTSSQPGKTQQLNYYQIEDA----FYLVDVPGYGYAKVSKTEKEKWAKMLSRYFETRQNLEAVFLVVDFRHEPQKNDIQMKEFFDAHNIPYFVIATKTDKVKKSQWNKHLSQIYKGLGLETIDQILPFSSETGEGREEAWEVIAALLEGEY 199 The following BLAST results are available for this feature:
BLAST of EWM28491.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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