rna2175, rna2175 (mRNA) Nannochloropsis gaditana

Overview
Namerna2175
Unique Namerna2175
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length564
Alignment locationCM002458.1:1068809..1069984 +

Link to JBrowse

Properties
Property NameValue
Productribosome biogenesis gtp-binding protein
Orig transcript idgnl|cribi|Naga_100058g2.4258.mrna
Orig protein idgnl|cribi|Naga_100058g2.4258
GeneYihA6
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1068809..1069984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
YihA6gene2078Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2175rna2175-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28491.1cds2167Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2175 ID=rna2175|Name=rna2175|organism=Nannochloropsis gaditana|type=mRNA|length=564bp
ATGACAAAGGTAGCGTTAGTCGATTTGCACACGAAGCCGTGGGGCTGGCG
GGGACGCTCCCTCAGACTGCTCCTATTACGCCATCGCTCCCTCTCTCCCT
CCCTCCACTCACCGTTACGGAGCCACGAGTCTGCGCGCGTCCCGAACTCA
TCAGCACAAACAGAGATTGTGTACCCTGTTTGCCCGCTCGAGACAGGCAC
GTATTGGCAAATACGTGTCGGCGGTATAGGCAGATCCACCGTCGCATCCG
TTCCCGCCATGGTCCGGATGCGCAGCGTCGCTGTCGTTGCAGTCGTGCTG
CTGCTTAGTGCAGTCACGATGTCACTTTCGCCGTCGCTCAAGATCGCTTT
AAGATGGCGTGCGCGGGAAAGGCTTCGCGTCTTCATGCGCCTTCAAGATA
CAAGAGCGATGAGTGAGAAAAACATTAATACCAAGCAAGGAAAAGACAAT
ATGAAAAGGGAAAAAAACATCTTCGGCTGCATAGCAAAACACAATGTAAA
CACATTCACGATAAATGGCAACTTCGGCTGTTCAACCGTTCTAGACGGAG
GATGTCAACACTAG
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protein sequence of rna2175

>rna2175-protein ID=rna2175-protein|Name=rna2175|organism=Nannochloropsis gaditana|type=polypeptide|length=391bp
MRGCLVPGLAMPFISFTIVVITLMSSTQVFGCGPKSMRCFLAGPSTLSRT
RRRGCSTSASQLRPLRAGSGSSDDGPFKAKREKLQKEKDKLAALMAKQER
EAVKKYMETQAKKERESQAKIRQAQEFMAQRAKGGGKDAPWSKGGDDSTQ
SIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDDVPFLGLPEVAVFG
RSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVD
LPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLN
MMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSS
VTGVNKRAVWSAIRDACVGEYLDLSEEAANDRAKTEEGEGV
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mRNA from alignment at CM002458.1:1068809..1069984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2175 ID=rna2175|Name=rna2175|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp|location=Sequence derived from alignment at CM002458.1:1068809..1069984+ (Nannochloropsis gaditana)
ATGAGAGGCTGTCTTGTACCTGGACTGGCAATGCCTTTTATATCGTTTAC
AATCGTTGTTATTACGCTCATGAGCAGCACGCAGGTATTTGGCTGTGGGC
CGAAGTCGATGCGTTGCTTTCTTGCTGGTCCTTCTACCCTGAGtaggaca
agaagaagaggctgCTCGACCAGTGCCTCCCAATTGAGGCCTTTACGGGC
AGGATCTGGCAGCTCCGATGACGGCCCTTTTAAAGCCAAAAGAGAAAAAT
tgcagaaagagaaggacaagctCGCGGCTCTCATGGcaaagcaagaaagg
gaggctgTAAAGAAATATATGGAAACGCAAGCGAAGAAGGAGCGCGAGTC
GCAAGCCAAAATTAGACAAGCGCAAGAATTTATGGCTCAACGAGCGAAAG
GCGGCGGGAAGGATGCACCTTGGTCTAAGGGTGGTGATGATTCCACTCAG
TCTATTCCCAAAAAGAAGGCCCGAAATTTTCAGCAAATCTCCCTTACGTG
CCGGCAGTTTAGCATCGACGATATCCAGGACGTGACTTTCGAAGGGAGCC
ATCTCGACGATGTCCCCTTCCTAGGCCTTCCTGAGGTAGCTGTGTTCGGG
CGGTCCAATGTGGGGAAATCCTCTTTACTTAATTGCCTTGCGGGGATCAA
CAAAAAGGTCGCCGTTGTGTCCAAGACCCCAGGACGCACCCAGCAAATCA
ACCTGTTCAAAGTCCACGATTCCAACGGCCCCGTCTCTGTCCTTGTCGAT
CTCCCCGGATACGGGTACGCAAAGCTACCCAAGGCCCTTCAAAGCGACAT
TGGTGCACAAGTGCGTCGGTACTTGAGTGACCGTCCAACCCTCCGCTTGG
CAGTCTTGCTGATGGACGCAAGGCGGGAGCCTCAGAAAAGTGATTTGAAC
ATGATGAAATACTTCCGGGCTGCCAATATTCCTTTGCTTGTGCTTGCCAC
TAAGGTTGACAAGCTCAAGCACGAAGATATCGAAGAGAATCTGGGTAGGT
TGCACCAATATTTCAAGCTGCCGGTGGGCATGCCAGTCGCGTTTTCCTCC
GTGACGGGAGTGAACAAGCGGGCGGTCTGGAGCGCGATCCGCGATGCATG
CGTGGGAGAATATCTCGACTTGAGTGAAGAAGCAGCAAATGACCGTGCCA
agacggaagagggggaaggagtgtgA
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Coding sequence (CDS) from alignment at CM002458.1:1068809..1069984+

>rna2175 ID=rna2175|Name=rna2175|organism=Nannochloropsis gaditana|type=CDS|length=1176bp|location=Sequence derived from alignment at CM002458.1:1068809..1069984+ (Nannochloropsis gaditana)
ATGAGAGGCTGTCTTGTACCTGGACTGGCAATGCCTTTTATATCGTTTAC
AATCGTTGTTATTACGCTCATGAGCAGCACGCAGGTATTTGGCTGTGGGC
CGAAGTCGATGCGTTGCTTTCTTGCTGGTCCTTCTACCCTGAGtaggaca
agaagaagaggctgCTCGACCAGTGCCTCCCAATTGAGGCCTTTACGGGC
AGGATCTGGCAGCTCCGATGACGGCCCTTTTAAAGCCAAAAGAGAAAAAT
tgcagaaagagaaggacaagctCGCGGCTCTCATGGcaaagcaagaaagg
gaggctgTAAAGAAATATATGGAAACGCAAGCGAAGAAGGAGCGCGAGTC
GCAAGCCAAAATTAGACAAGCGCAAGAATTTATGGCTCAACGAGCGAAAG
GCGGCGGGAAGGATGCACCTTGGTCTAAGGGTGGTGATGATTCCACTCAG
TCTATTCCCAAAAAGAAGGCCCGAAATTTTCAGCAAATCTCCCTTACGTG
CCGGCAGTTTAGCATCGACGATATCCAGGACGTGACTTTCGAAGGGAGCC
ATCTCGACGATGTCCCCTTCCTAGGCCTTCCTGAGGTAGCTGTGTTCGGG
CGGTCCAATGTGGGGAAATCCTCTTTACTTAATTGCCTTGCGGGGATCAA
CAAAAAGGTCGCCGTTGTGTCCAAGACCCCAGGACGCACCCAGCAAATCA
ACCTGTTCAAAGTCCACGATTCCAACGGCCCCGTCTCTGTCCTTGTCGAT
CTCCCCGGATACGGGTACGCAAAGCTACCCAAGGCCCTTCAAAGCGACAT
TGGTGCACAAGTGCGTCGGTACTTGAGTGACCGTCCAACCCTCCGCTTGG
CAGTCTTGCTGATGGACGCAAGGCGGGAGCCTCAGAAAAGTGATTTGAAC
ATGATGAAATACTTCCGGGCTGCCAATATTCCTTTGCTTGTGCTTGCCAC
TAAGGTTGACAAGCTCAAGCACGAAGATATCGAAGAGAATCTGGGTAGGT
TGCACCAATATTTCAAGCTGCCGGTGGGCATGCCAGTCGCGTTTTCCTCC
GTGACGGGAGTGAACAAGCGGGCGGTCTGGAGCGCGATCCGCGATGCATG
CGTGGGAGAATATCTCGACTTGAGTGAAGAAGCAGCAAATGACCGTGCCA
agacggaagagggggaaggagtgtgA
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Synonyms
Publications