EWM28491.1, cds2167 (CDS) Nannochloropsis gaditana

Overview
NameEWM28491.1
Unique Namecds2167
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1068809..1069984 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28491.1
Productribosome biogenesis gtp-binding protein
Orig transcript idgnl|cribi|Naga_100058g2.4258.mrna
GeneYihA6
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1068809..1069984 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0016043cellular component organization
GO:0000917division septum assembly
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR030393G_ENGB_dom
IPR019987GTP-bd_ribosome_bio_YsxC
IPR027417P-loop_NTPase
IPR006073GTP_binding_domain
Homology
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|585110907|gb|EWM28491.1| (ribosome biogenesis gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 805.823 bits (2080), Expect = 0.000e+0
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query:    1 MRGCLVPGLAMPFISFTIVVITLMSSTQVFGCGPKSMRCFLAGPSTLSRTRRRGCSTSASQLRPLRAGSGSSDDGPFKAKREKLQKEKDKLAALMAKQEREAVKKYMETQAKKERESQAKIRQAQEFMAQRAKGGGKDAPWSKGGDDSTQSIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGEYLDLSEEAANDRAKTEEGEGV 391
            MRGCLVPGLAMPFISFTIVVITLMSSTQVFGCGPKSMRCFLAGPSTLSRTRRRGCSTSASQLRPLRAGSGSSDDGPFKAKREKLQKEKDKLAALMAKQEREAVKKYMETQAKKERESQAKIRQAQEFMAQRAKGGGKDAPWSKGGDDSTQSIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGEYLDLSEEAANDRAKTEEGEGV
Sbjct:    1 MRGCLVPGLAMPFISFTIVVITLMSSTQVFGCGPKSMRCFLAGPSTLSRTRRRGCSTSASQLRPLRAGSGSSDDGPFKAKREKLQKEKDKLAALMAKQEREAVKKYMETQAKKERESQAKIRQAQEFMAQRAKGGGKDAPWSKGGDDSTQSIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGEYLDLSEEAANDRAKTEEGEGV 391          
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|873240688|emb|CEL93180.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 181.8 bits (460), Expect = 5.642e-49
Identity = 126/304 (41.45%), Postives = 169/304 (55.59%), Query Frame = 0
Query:   97 KQEREAVKKYMETQAKK---------ERESQAKIRQAQEFMA-QRAKGGGKDAPWSKGGDDSTQSIPKKKA--RNFQQI----------SLTCRQFSIDDIQDVTFEGSHLD--DVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVV--SKTPGRTQQINLFKVHD--SNGPVSVLVDLPGYGYAK-LPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGEY 371
            + E + +KKY    A+K         E E +AK +  Q  +A QR +    DA  S   D    S P  KA  +  Q I          ++  R F  +D+  V+F G + D  D+P  GLPEVA  GRSNVGKSS+LN L     + A V  SKTPGRTQQINLF++ D    G V VLVDLPGYGY + + K     I + +  YL  R  LRL +LL+D+R   Q+ D +++   R+ ++P LV ATKVD+LK  + + NL RL +  +LP   PV FSS+TG N   +W AI DAC+G+Y
Sbjct:   19 RHESKLIKKYKAKVARKTARGQSRQQEAEKRAKEQSRQRRLARQRKQSSATDASTSPH-DTPEASSPSAKAVPKGLQFIEAVEVSGGSSAVEVRPFEREDVGAVSFIGGYEDSRDLPATGLPEVAFLGRSNVGKSSMLNSLQSRASERAEVRISKTPGRTQQINLFRLSDRRKRGLV-VLVDLPGYGYTRSISKEDTKKIRSFLLAYLRKRAELRLFLLLVDSRLPAQEVDADVLANLRSMDVPYLVAATKVDRLKASERDANLARLREELQLPSWQPVPFSSMTGENGPLLWRAISDACIGQY 320          
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|922866531|gb|KOO33370.1| (ribosome biogenesis gtp-binding protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 171.014 bits (432), Expect = 4.178e-48
Identity = 89/182 (48.90%), Postives = 118/182 (64.84%), Query Frame = 0
Query:  188 VPFLGLPEVAVFGRSNVGKSSLLNCLAG-INKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACV 368
            +P L LPE  + GRSNVGKSS LN LAG  NKK+A VSKTPG T+ INL+++    G V  + DLPGYGYAK+ K +Q D   Q+  Y+  R  L+LAVL +DA+R+PQ+SD  ++ +  A     LV+ATK DKL  + ++ +L  L +   LP   P+A SSVTG+ KR VW AI + C 
Sbjct:    1 MPSLRLPEFTLAGRSNVGKSSALNTLAGRPNKKIAKVSKTPGSTRLINLYRL----GNVCTITDLPGYGYAKVSKEMQDDWRKQIEAYMRRREELKLAVLFVDAQRDPQESDAQLLDFLEAEAKSTLVVATKADKLAKQALQSSLEYLRESLALPSDQPIALSSVTGLGKREVWGAINEICT 178          
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|299115211|emb|CBN74042.1| (YihA6, YihA/EngB-like GTPase [Ectocarpus siliculosus])

HSP 1 Score: 174.866 bits (442), Expect = 1.448e-46
Identity = 105/240 (43.75%), Postives = 140/240 (58.33%), Query Frame = 0
Query:  139 APWSKGGD-DSTQSIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDD---VPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGP-VSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAAN---IPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGE 370
            AP  + GD    Q  P K  RN  +      +F  +DI+ V F GS+ D     P   LPE+A  GRSNVGKSS+LN L G  + VA VSKTPGRT++IN+FK  + N   V    DLPGYGYAK+ K  Q  I   +  YL  R  L+L +LL D+RREP  SD  +++Y          +L++ATKVDKL   +   N+ RL + F+LP G+PV+FS++TG  K+ +WS IR A   +
Sbjct:  224 APRGRVGDPQDDQDGPGKAGRNPFKKEKIVSKFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG--EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAAAAQ 461          
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|551572243|ref|XP_005771968.1| (GTP-binding protein engB [Emiliania huxleyi CCMP1516] >gi|485623326|gb|EOD19539.1| GTP-binding protein engB [Emiliania huxleyi CCMP1516])

HSP 1 Score: 163.696 bits (413), Expect = 4.848e-45
Identity = 88/199 (44.22%), Postives = 120/199 (60.30%), Query Frame = 0
Query:  174 DIQDVTFEGSHLDD--VPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGE 370
            D   VTF  S  D   +PF  LPEV + GRSNVGKSS LN L+G  K+VA VSKTPGRT+ INLF V    G    + DLPGYG+AK+   LQ +    V  YL  R  LR AV+ +D++REPQ  D  ++ +     IP +V+ATKVDK++   ++  +  L +   LP   P+ FSS TGV ++ +W  +++ C+ E
Sbjct:    8 DRSGVTFVNSFADPRGMPFSPLPEVTLVGRSNVGKSSALNALSGRRKRVAQVSKTPGRTRLINLFSV----GSALTVTDLPGYGFAKVSAELQEEWRRNVEAYLRQRENLRAAVVFIDSQREPQAVDAQILDFLAFHEIPSVVVATKVDKVRPSQLDNCMAALRRGLALPPDQPIPFSSTTGVGRKELWQYLQEICLAE 202          
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|551676106|ref|XP_005840807.1| (hypothetical protein GUITHDRAFT_64138 [Guillardia theta CCMP2712] >gi|428184973|gb|EKX53827.1| hypothetical protein GUITHDRAFT_64138 [Guillardia theta CCMP2712])

HSP 1 Score: 152.91 bits (385), Expect = 1.084e-40
Identity = 80/187 (42.78%), Postives = 114/187 (60.96%), Query Frame = 0
Query:  180 FEGSHLDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDA 366
            F GS   + P L +PEVA  GRSNVGKSS+LNCL G   K+AV SKTPGRT++INLF   D+ G    +VDLPG GYAK+ K ++  +  ++ +Y+  R  L+L V+L+D R EPQ+ D+ + +      +P +++ TK DKL + +IE    +  +   +  G  ++FSS TG  K  VW  I  A
Sbjct:    7 FLGSFDGEPPLLPVPEVAFAGRSNVGKSSMLNCLTG--SKLAVTSKTPGRTRRINLFVHKDNTGRALGIVDLPGLGYAKMSKGIKEKLSDEITQYIKTREALKLLVILIDPRLEPQEQDVLLAELCLDKKLPFVMVGTKADKLSNNEIEIAFSKYEEAIGIGTGQLISFSSKTGEGKAFVWKQINQA 191          
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|1081631552|emb|SCY70054.1| (GTP-binding protein [Desulfoluna spongiiphila])

HSP 1 Score: 149.443 bits (376), Expect = 1.283e-39
Identity = 76/181 (41.99%), Postives = 111/181 (61.33%), Query Frame = 0
Query:  185 LDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRD 365
            +D  P L LPE+A  GRSNVGKSSL+N L    K++   S TPGRTQ +N F ++D        VDLPGYGYAK PK +  + G  V RYL++R +L+ A+LL+D RR P++ + N++++FRA  IP  V+ TK DK  +   + N+ R+ +   L     + FS+++   +  VW AI +
Sbjct:   15 VDQYPELRLPEIAFAGRSNVGKSSLINVLVN-RKRLVKTSSTPGRTQLVNFFDINDE----ITFVDLPGYGYAKAPKRVVREWGPMVERYLAERRSLKGALLLIDIRRSPREDEFNLIEWFRAHGIPFRVVLTKADKFSNNKRQSNVSRIAKELGLKSSEMIVFSALSRSGREEVWQAITE 190          
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|1088607142|gb|OHE23399.1| (YihA family ribosome biogenesis GTP-binding protein [Syntrophobacterales bacterium RBG_19FT_COMBO_59_10])

HSP 1 Score: 141.739 bits (356), Expect = 9.931e-37
Identity = 75/181 (41.44%), Postives = 111/181 (61.33%), Query Frame = 0
Query:  189 PFLGLPEVAVFGRSNVGKSSLLNCLAGINKK-VAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMP-VAFSSVTGVNKRAVWSAIRDAC 367
            P   LPE+A  GRSNVGKSSL+N L  +N++ +A  S TPGRTQ+IN F V++        VDLPGYGYAK+P+A++   G  +  YL +R TLRL VL++D RR+P   DL ++++ +   +P  ++ TK+DK+    + +    + +   LP   P +AFS+ TG  K  +W  I+ A 
Sbjct:   19 PPASLPEIAFAGRSNVGKSSLINTL--LNRRGLARTSNTPGRTQEINFFTVNNR----VAFVDLPGYGYAKVPEAIRRHWGPMIETYLRERQTLRLVVLILDVRRDPSGEDLQLIRWLQFYRLPSHIVLTKIDKMSRNQLAQRQRLIGERLGLPAAEPLLAFSAKTGAGKERLWREIKKAM 193          
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|1085224377|gb|OGU07884.1| (YihA family ribosome biogenesis GTP-binding protein [Geobacteraceae bacterium GWC2_55_20])

HSP 1 Score: 141.739 bits (356), Expect = 1.031e-36
Identity = 81/177 (45.76%), Postives = 105/177 (59.32%), Query Frame = 0
Query:  187 DVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAI 363
            D P  GLPEVA  GRSNVGKSSL+N LAG  K +   S TPGRTQ IN F   D NG +  LVDLPGYGYAK P AL+   G  +  YLS R +L+  VL++D RR P   DL M+++    NIP +++ TK DKL   +  +    +    K   GM + FS+++   +  +WS I
Sbjct:   17 DYPPPGLPEVAFVGRSNVGKSSLINVLAG-RKGLVRTSSTPGRTQLINFF---DING-ILTLVDLPGYGYAKAPPALRKQWGPMIESYLSLRESLKAVVLILDIRRVPSDGDLQMLRWLEMYNIPPIIVLTKCDKLSKNEQAKQKTVIAAAIKRDKGMLLPFSALSRDGRDGIWSEI 188          
BLAST of EWM28491.1 vs. NCBI_GenBank
Match: gi|1056547876|ref|WP_067980310.1| (GTP-binding protein [Aerococcus urinaehominis] >gi|984726252|gb|AMB99810.1| GTP-binding protein [Aerococcus urinaehominis] >gi|1086102147|emb|SDM60251.1| GTP-binding protein [Aerococcus urinaehominis])

HSP 1 Score: 141.354 bits (355), Expect = 1.306e-36
Identity = 75/180 (41.67%), Postives = 106/180 (58.89%), Query Frame = 0
Query:  193 LPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKL-PVGMPVAFSSVTGVNKRAVWSAIRDACVGEY 371
            LPE+A+ GRSNVGKSS +N L G  KK+A  S  PG+TQQ+N +++ D+      LVD+PGYGYAK+ K  +      + RY   R  L    L++D R EPQK+D+ M ++F A NIP  V+ATK DK+K     ++L ++++   L  +   + FSS TG  +   W  I     GEY
Sbjct:   25 LPEIALAGRSNVGKSSFINKLIG-RKKLARTSSQPGKTQQLNYYQIEDA----FYLVDVPGYGYAKVSKTEKEKWAKMLSRYFETRQNLEAVFLVVDFRHEPQKNDIQMKEFFDAHNIPYFVIATKTDKVKKSQWNKHLSQIYKGLGLETIDQILPFSSETGEGREEAWEVIAALLEGEY 199          
The following BLAST results are available for this feature:
BLAST of EWM28491.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110907|gb|EWM28491.1|0.000e+0100.00ribosome biogenesis gtp-binding protein [Nannochlo... [more]
gi|873240688|emb|CEL93180.1|5.642e-4941.45unnamed protein product [Vitrella brassicaformis C... [more]
gi|922866531|gb|KOO33370.1|4.178e-4848.90ribosome biogenesis gtp-binding protein [Chrysochr... [more]
gi|299115211|emb|CBN74042.1|1.448e-4643.75YihA6, YihA/EngB-like GTPase [Ectocarpus siliculos... [more]
gi|551572243|ref|XP_005771968.1|4.848e-4544.22GTP-binding protein engB [Emiliania huxleyi CCMP15... [more]
gi|551676106|ref|XP_005840807.1|1.084e-4042.78hypothetical protein GUITHDRAFT_64138 [Guillardia ... [more]
gi|1081631552|emb|SCY70054.1|1.283e-3941.99GTP-binding protein [Desulfoluna spongiiphila][more]
gi|1088607142|gb|OHE23399.1|9.931e-3741.44YihA family ribosome biogenesis GTP-binding protei... [more]
gi|1085224377|gb|OGU07884.1|1.031e-3645.76YihA family ribosome biogenesis GTP-binding protei... [more]
gi|1056547876|ref|WP_067980310.1|1.306e-3641.67GTP-binding protein [Aerococcus urinaehominis] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2175rna2175Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications