EWM28514.1, cds2160 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|585110931|gb|EWM28514.1| (Isochorismatase [Nannochloropsis gaditana]) HSP 1 Score: 479.559 bits (1233), Expect = 2.479e-171 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0 Query: 1 MYNLHPARKSTELRTYFATMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFNDLLKENSAL 230 MYNLHPARKSTELRTYFATMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFNDLLKENSAL Sbjct: 1 MYNLHPARKSTELRTYFATMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFNDLLKENSAL 230
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|298705933|emb|CBJ29063.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 224.557 bits (571), Expect = 5.017e-70 Identity = 110/212 (51.89%), Postives = 148/212 (69.81%), Query Frame = 0 Query: 7 ARKSTELRTYFATMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAV--DYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGE 216 AR S+++ M + +R +GK+ P +T F CDVQERFRD+I + P VI TAKFM V QEL++P + +EQYPKA TVPEL +P FEKK+FSM T E++ +++ P+RK VLFGIEAHVCV QT LDLL+ GY VH++ DGVSSQK HDRAVAL+RM+++GAFLT+AE + F L+ TA + +F+ +S L+K+ E Sbjct: 52 ARASSDIPV--VEMAVATASRRLGKIFPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAE 261
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|1072231662|gb|OEU16394.1| (Isochorismatase hydrolase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 219.935 bits (559), Expect = 4.940e-69 Identity = 108/195 (55.38%), Postives = 136/195 (69.74%), Query Frame = 0 Query: 28 AIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYC-IPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFN 221 ++GKL+P+ T FLLCD+Q+RFR + W +I TAK+MT+V +EL IP + ++QY K FG TV + A + FEKK FSM TDE+K+ MQ R +VV+FGIEAHVCVQQT LDLLE G VHI+ D VSSQ+ +DR +AL RM +AGAFLTTA+S FMLMQ+A H FK +S L EH PN FN Sbjct: 19 SVGKLKPENTVFLLCDIQDRFRPLTWRGETIINTAKYMTSVAKELDIPIVITQQYTKVFGETVKDTFADQEHFASCKIFEKKRFSMCTDEVKSHMQT-LNRDSVVIFGIEAHVCVQQTCLDLLEDGKEVHIIADSVSSQQPYDRELALNRMSQAGAFLTTAQSAAFMLMQSAEHANFKAVSKLTVEHMKLPNEFN 212
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|397636078|gb|EJK72134.1| (hypothetical protein THAOC_06363, partial [Thalassiosira oceanica]) HSP 1 Score: 220.32 bits (560), Expect = 1.325e-67 Identity = 109/207 (52.66%), Postives = 141/207 (68.12%), Query Frame = 0 Query: 19 TMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDY---CIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFND 222 TM+ AR++GKL P + L+CDVQERFR +I VI T KFMT V ++L IP +A+EQY K FG T+P+ A D P FEKK FSM+TDE+ + ++ R + +L GIEAHVC+QQTALDLLE G VHI+ DGVSSQ+ +DR +ALRR+E +GAFLTTA+S FML+ +A H FK +S L+K H PN FN+ Sbjct: 124 TMSLQAAARSVGKLSPSNSVLLVCDVQERFRPLISKMETVINTTKFMTGVAKKLHIPMVATEQYSKVFGKTIPDSFADPSDIGSTSCPVFEKKKFSMITDEVASHLE-SLGRSSYLLVGIEAHVCLQQTALDLLEAGNDVHIVADGVSSQQTYDREMALRRLETSGAFLTTAQSAAFMLLGSADHADFKAVSKLVKAHMALPNEFNE 329
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|219119401|ref|XP_002180462.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407935|gb|EEC47870.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 214.542 bits (545), Expect = 5.100e-67 Identity = 106/206 (51.46%), Postives = 145/206 (70.39%), Query Frame = 0 Query: 19 TMTASNVARA--IGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDY-CIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFN 221 ++TAS A +GKLQP++T LLCD+QERFR +I + V+ T ++MT+VG+ L +P LA++QY K FG TVP+ A D IP F+KK FSMLT+++ + E ++ T ++ GIEAHVCVQQT LDLLE+G VH++ D VSSQ+A+DR +AL+R++ AG FLTTA+S FML+Q+A H FK +S L EH PN FN Sbjct: 2 SITASKAASRLFVGKLQPESTALLLCDMQERFRPLIHNMETVVNTCRYMTSVGKALNVPVLATQQYTKVFGETVPDCFADPQDLQTIPNFDKKKFSMLTEDVDRVLD-EWKKDTYIIMGIEAHVCVQQTCLDLLERGANVHVIADAVSSQQAYDREIALQRLQAAGCFLTTAQSAAFMLLQSADHSNFKAVSKLTVEHMKLPNEFN 206
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|1210512678|dbj|GAX28268.1| (hypothetical protein FisN_27Hh081 [Fistulifera solaris]) HSP 1 Score: 213.386 bits (542), Expect = 1.866e-66 Identity = 113/207 (54.59%), Postives = 140/207 (67.63%), Query Frame = 0 Query: 27 RAIG-KLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPT----FEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFNDLLKENS 228 R +G KL P T L+CDVQERFR +IW V+RT ++MT + L IP + +EQY KAFG T+ E A + IP+ FEKK FSMLT L Q+Q PER T VL GIEAHVCVQQT LDLL VH++ DG+SSQ+ +DR +AL+RM++AGAFLTTA+S FMLMQTA HPQFK S L EH + N FND +++S Sbjct: 5 RILGNKLHPGKTVLLVCDVQERFRSLIWRCETVVRTTQYMTRLAALLDIPVVVTEQYKKAFGPTIAECFA---ENTIPSTAHVFEKKQFSMLTPPLLQQLQQYPERDTFVLVGIEAHVCVQQTCLDLLALQKEVHLVADGISSQQPYDREIALQRMQQAGAFLTTAQSAAFMLMQTADHPQFKAFSQLTVEHMKKRNEFNDDYQKSS 208
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|223997442|ref|XP_002288394.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975502|gb|EED93830.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 208.764 bits (530), Expect = 8.603e-65 Identity = 105/203 (51.72%), Postives = 136/203 (67.00%), Query Frame = 0 Query: 22 ASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDY--CIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFND 222 A +RA+G+L P + L+CD+QE FR +I++ VI T+KFMT V +EL +P + S+QY K FG T+ + A D + FEKK FSMLT E + R + +L GIEAHVC+QQT LDLLEQG+ VHI+ DGVSSQ+ +DR +ALRR E AGAF+TTA+S FMLM TA HP FK +S L+KEH N FN+ Sbjct: 4 AVTASRAVGRLSPSKSVLLVCDIQELFRPLIYNMETVINTSKFMTGVAKELDVPVVLSQQYTKVFGPTITDAIADPKDIGTTVVPFEKKKFSMLTPECSEHLT-SLGRTSFLLVGIEAHVCLQQTVLDLLEQGHDVHIIADGVSSQQKYDREMALRRCEGAGAFVTTAQSAAFMLMGTADHPNFKAVSKLVKEHMKLKNEFNE 205
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|1129171929|gb|OLP81730.1| (Isochorismatase domain-containing protein 1 [Symbiodinium microadriaticum]) HSP 1 Score: 203.756 bits (517), Expect = 2.875e-61 Identity = 99/187 (52.94%), Postives = 131/187 (70.05%), Query Frame = 0 Query: 28 AIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHA 214 ++G+L+P +T FLLCDVQERFRDVI P+VI AK M G+ L IP + +EQYPKA G TVPEL + + FEK FSM TDE A + ++K V+FG+E HVCVQQTA DLL +G+ VH+L DGVSSQ+A DR VAL+R+ +AG F+TTAES +F L+++ PQFK +S ++K + Sbjct: 6 SLGRLEPASTVFLLCDVQERFRDVIDRMPEVIAAAKAMMDAGEALSIPIIITEQYPKALGHTVPELDVSKAN----VFEKTKFSMCTDEFLAYLA-SLDKKDAVIFGVETHVCVQQTAFDLLSKGFQVHVLADGVSSQRAPDREVALQRLRQAGCFVTTAESALFELLRSKDAPQFKAVSGVVKAYG 187
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|552811201|ref|XP_005843403.1| (hypothetical protein CHLNCDRAFT_49249 [Chlorella variabilis] >gi|307103036|gb|EFN51301.1| hypothetical protein CHLNCDRAFT_49249 [Chlorella variabilis]) HSP 1 Score: 196.438 bits (498), Expect = 4.770e-60 Identity = 100/192 (52.08%), Postives = 127/192 (66.15%), Query Frame = 0 Query: 28 AIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNP 219 +GKL + T L+CDVQERFR VI FP VI T+K M LQ+P + +EQYPKA G TV EL+ + P K +FSM T+E+ A Q P K V++ GIE HVCV QT+LDLLE+GY VH+LVDGVSSQ+ DR+VAL+R+ ++GAFL T+E + F +M+ SHP FK IS L KE E P Sbjct: 9 GVGKLAAEETALLVCDVQERFRPVITGFPAVIDTSKRMLRAAAALQLPVIVTEQYPKALGNTVEELREF-IPQGAPVVAKTLFSMCTEEVNAAFQALPGVKKVLIVGIETHVCVLQTSLDLLERGYEVHVLVDGVSSQRLGDRSVALQRLAQSGAFLATSEMVCFQMMKNTSHPAFKAISALAKEARPEQLP 199
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|1210524860|dbj|GAX16369.1| (hypothetical protein FisN_27Lh081 [Fistulifera solaris]) HSP 1 Score: 196.052 bits (497), Expect = 1.563e-59 Identity = 106/202 (52.48%), Postives = 137/202 (67.82%), Query Frame = 0 Query: 27 RAIG-KLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPT---FEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLE-QGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEH-AGEPNPFND 222 R +G KL P T L+CD+QERFR +IW V++T ++MT + L+IP + +EQY KAFG+T+ E A D PT FEKK FSMLT + Q++ PER T +L GIEAHVCVQQT LDLL Q VH++ DG+SSQ+ +DR +AL+RM++AGA +TTA+S FMLMQTA HPQFK S L EH + N FN+ Sbjct: 5 RILGNKLHPAQTVLLVCDIQERFRSLIWRGETVVQTTQYMTRLAALLEIPVVVTEQYKKAFGSTITE--CFAHDERPPTTHVFEKKQFSMLTPPVLEQLRQYPERDTYLLVGIEAHVCVQQTCLDLLTLQKKQVHLIADGISSQQPYDREIALQRMQQAGALVTTAQSAAFMLMQTADHPQFKAFSQLTIEHMKKKSNEFNE 204 The following BLAST results are available for this feature:
BLAST of EWM28514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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