rna2168, rna2168 (mRNA) Nannochloropsis gaditana

Overview
Namerna2168
Unique Namerna2168
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1854
Alignment locationCM002458.1:1058803..1059834 -

Link to JBrowse

Properties
Property NameValue
ProductIsochorismatase
Orig transcript idgnl|cribi|Naga_100131g6.7459.mrna
Orig protein idgnl|cribi|Naga_100131g6.7459
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1058803..1059834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100131g6gene2071Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2168rna2168-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28514.1cds2160Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2168 ID=rna2168|Name=rna2168|organism=Nannochloropsis gaditana|type=mRNA|length=1854bp
ATGCTTACTCTGCCGTCCCAAACGTCAAGATACTTCCCAAAAACCACATC
AACAGGGAAGCGACTGTCATATCGCATCACTAAGCCCGTTCGATCTGCCC
GCCACCTGGAGCAGCTGCATATGCTACGAGCTATTTTCCCCCGTGCACTC
CTAATATCGCCTCTCACGGCGTCGGTCCGTCTATCCCGCCAAGTCCTTGT
TGCATCTCTCTCCTCCGCCTCTTCAAGACCAGGGCAAGGACAACTTCCGC
CGTCTTCTTCCCGTTGGTTGACAGCGAAGCAAGCAACAACAGTCTTGACT
GCAGTTACCGCACTCTCTGCAGCAGCAGCGGCAGTTGCATGGTGTGAGAC
TGAGGAGATAAACGATGAGCGGGCGATGCCCGTGACAGGAGCGGTGGAGG
GAGTGCCAATCAAGGCCGACCTTACGAATCAAGAATACAAGCTTGCGCGG
CAGAATACAACCAGAAAGGTCAAAAATCATTATCAGTATGTAATCATGGG
CGCAGGTACTACGGCCTATGCAGCCATCGAGACCATTTTCAACCGGCAGC
CACAAGCCGACATATTGCTCATCTCTAACGAGGCTGCTTTACCCCAGCCA
GACGTTTTCAGGCACCACGCCTTGTCCGCACCGCTGTTGCATTCCTACAA
TGAATGGCGCCGCCATACTACTTCGAAGCTCGAGTCCGAGCCCGATGCAA
TTTCTTCGGCGCCCATCACGCTGCTTCTAAACAACGAGAAATCCTTGCAG
CTCGATGTCGATAAGCAGCGCATCCTGCTTCAAGATGGCTCTTACATTAC
CTACGACCGTTGCCTAATTGCCACGGCAGGGAAAGATCGGGGTTTGTGGG
CTGTGGACCGGCGGAAGATCTCCTATTCCCTACGCGACCGCATTAACACC
TGCAGCACCATATACGATTTTGAGCAGCTGGACAGCCTGCACAACATCAT
GGCGAACAAGCACGTGTCTGTCGTGGGCGGGGGATTTCTGGGGACCGAGC
TGGCTTTGGCCCTGGCAGTGCGGGGACGCGAGACGGGCATGACTGTCTCG
CAGATCTACGCGGAGAAAGGTCCGCTGTGTCGGTATATCCCCAACTACTT
GGGGATGCACGTCCAGCGGCTGTTGCACGGTGCCGGCGTGCGCTACGTGA
ACGAGCGTTTGGTCACGGACGTCAAAGACGGGGGGGACGACGCCCCGGGG
GCCCTGCGGATCTCCTTGATGGGATGGAACAAGGAGAACATTTACACCGA
TTACGCCGTCCTGGCGCCCACCCACGTCGAGCCCTGCGTGGACGTGGCGG
TGAAGAGTGGGTTAGAACTCGATGCCAACACGAACGGCATTGCCGTGAAT
CAGCAGCTGGAGGCCGTGGGGAACGTGTTTGTGGCGGGCGGGGTAGCCAG
TTACTACGACGCTGCCTTGGGGAGGCGGAGGGTGGAGATGTTTGACCATT
CCATCAACAGTGGGATCCTGGCGGGGAAGAACATGACAGCGGACGAGCGG
AGACCAAAGCGACGATATACGCACCAGCCTATGTACCGGTCCCTCTTGAA
AGATATCGACGTGGTCTGCGACGTGGTGGGGGAGATTGACAGCAAGATGC
ACACGGTGGGCATCTGGGTGAACAACCCCGTTGAAACCGAGGACGAGACG
GAAACCTACCAGCGCGGGATCATTTACTACATGCGGGAAAACAGGATCCG
AGGCATCATGCTATGGAACGCCAGCGACTATTTGGAACGGGCCCGGGAAG
TTCTCAACGCACAGACCAACATCGCGAACGTGGCCATGCTAAAAAGGCAG
ATTGCCTTGGCGCCGGACGCCTGGCTCAGAGTCATGGAGACCGCGGCGGA
TTAG
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protein sequence of rna2168

>rna2168-protein ID=rna2168-protein|Name=rna2168|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MYNLHPARKSTELRTYFATMTASNVARAIGKLQPKTTTFLLCDVQERFRD
VIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDY
CIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLE
QGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASH
PQFKTISFLIKEHAGEPNPFNDLLKENSAL
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mRNA from alignment at CM002458.1:1058803..1059834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2168 ID=rna2168|Name=rna2168|organism=Nannochloropsis gaditana|type=mRNA|length=1032bp|location=Sequence derived from alignment at CM002458.1:1058803..1059834- (Nannochloropsis gaditana)
ATGTATAACTTACATCCCGCGCGTAAAAGCACAGAACTTCGTACCTACTT
CGCTACCATGACCGCATCAAACGTAGCCCGCGCCATAGGCAAGCTGCAGC
CGAAGACCACAACTTTCCTGCTTTGCGATGTTCAAGAGCGGTTCCGCGAT
GTGATTTGGCACTTCCCCCAGGTCAGTATGATCGATGTTTCTCGCTGGGG
GGGAATCACAAAAATGAAATGTACGCGAGCAACGCATAAGTCGGGTTGAC
AAGGATCTCCATCCCGCTCCCTTCTACCCATGGACAAGGTAATCCGCACG
GCCAAGTTCATGACGGCAGTCGGTCAAGAGTTACAGATCCCTACCTTAGC
CTCAGAGCAGTATCCCAAAGCCTTTGGCGCCACGGTATGTTTGAAGCGGC
GTTTATTGCGGTCGGGAGGCGGGGGACATATATAGAACTGATTGAATTTT
GAGTTGTTGGGGCCTTCCCGGTTGTTGAGGGCATGGATGGGTATTCCCAT
CTACACCCCCCGATTGGCCTTCGTACCAGACGATGTGATTGGCATGCGCT
AGCTTGTGCACGGCACGCACGTGCTTACTTGCGCCTCAACAAATACAATC
GATCAGGTCCCCGAGCTGAAGGCTGCCGCCGTTGACTACTGCATCCCGAC
CTTTGAGAAGAAGATGTTCAGTATGCTTACCGACGAGTTGAAGGCGCAAA
TGCAGTGTGAGCCTGAGCGCAAGACCGTGGTCTTGTTCGGGATCGAGGCC
CACGTCTGCGTGCAGCAAACCGCCCTGGACCTGCTAGAGCAAGGTTACGC
CGTGCACATTCTTGTGGACGGCGTCTCGTCCCAGAAAGCGCATGACCGTG
CGGTGGCCTTGCGCAGGATGGAAAAGGCAGGCGCATTTTTGACGACGGCA
GAGAGTTTAGTCTTTATGCTGATGCAAACTGCGTCGCATCCGCAGTTCAA
GACAATTTCCTTTTTGATCAAGGAGCATGCCGGAGAACCCAATCCCTTCA
ATGATTTATTGAAAGAAAATTCAGCGCTTTGA
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Coding sequence (CDS) from alignment at CM002458.1:1058803..1059834-

>rna2168 ID=rna2168|Name=rna2168|organism=Nannochloropsis gaditana|type=CDS|length=2079bp|location=Sequence derived from alignment at CM002458.1:1058803..1059834- (Nannochloropsis gaditana)
GTCCCCGAGCTGAAGGCTGCCGCCGTTGACTACTGCATCCCGACCTTTGA
GAAGAAGATGTTCAGTATGCTTACCGACGAGTTGAAGGCGCAAATGCAGT
GTGAGCCTGAGCGCAAGACCGTGGTCTTGTTCGGGATCGAGGCCCACGTC
TGCGTGCAGCAAACCGCCCTGGACCTGCTAGAGCAAGGTTACGCCGTGCA
CATTCTTGTGGACGGCGTCTCGTCCCAGAAAGCGCATGACCGTGCGGTGG
CCTTGCGCAGGATGGAAAAGGCAGGCGCATTTTTGACGACGGCAGAGAGT
TTAGTCTTTATGCTGATGCAAACTGCGTCGCATCCGCAGTTCAAGACAAT
TTCCTTTTTGATCAAGGAGCATGCCGGAGAACCCAATCCCTTCAATGATT
TATTGAAAGAAAATTCAGCGCTTTGAGTAATCCGCACGGCCAAGTTCATG
ACGGCAGTCGGTCAAGAGTTACAGATCCCTACCTTAGCCTCAGAGCAGTA
TCCCAAAGCCTTTGGCGCCACGATGTATAACTTACATCCCGCGCGTAAAA
GCACAGAACTTCGTACCTACTTCGCTACCATGACCGCATCAAACGTAGCC
CGCGCCATAGGCAAGCTGCAGCCGAAGACCACAACTTTCCTGCTTTGCGA
TGTTCAAGAGCGGTTCCGCGATGTGATTTGGCACTTCCCCCAGGTCCCCG
AGCTGAAGGCTGCCGCCGTTGACTACTGCATCCCGACCTTTGAGAAGAAG
ATGTTCAGTATGCTTACCGACGAGTTGAAGGCGCAAATGCAGTGTGAGCC
TGAGCGCAAGACCGTGGTCTTGTTCGGGATCGAGGCCCACGTCTGCGTGC
AGCAAACCGCCCTGGACCTGCTAGAGCAAGGTTACGCCGTGCACATTCTT
GTGGACGGCGTCTCGTCCCAGAAAGCGCATGACCGTGCGGTGGCCTTGCG
CAGGATGGAAAAGGCAGGCGCATTTTTGACGACGGCAGAGAGTTTAGTCT
TTATGCTGATGCAAACTGCGTCGCATCCGCAGTTCAAGACAATTTCCTTT
TTGATCAAGGAGCATGCCGGAGAACCCAATCCCTTCAATGATTTATTGAA
AGAAAATTCAGCGCTTTGAGTAATCCGCACGGCCAAGTTCATGACGGCAG
TCGGTCAAGAGTTACAGATCCCTACCTTAGCCTCAGAGCAGTATCCCAAA
GCCTTTGGCGCCACGATGTATAACTTACATCCCGCGCGTAAAAGCACAGA
ACTTCGTACCTACTTCGCTACCATGACCGCATCAAACGTAGCCCGCGCCA
TAGGCAAGCTGCAGCCGAAGACCACAACTTTCCTGCTTTGCGATGTTCAA
GAGCGGTTCCGCGATGTGATTTGGCACTTCCCCCAGGTCCCCGAGCTGAA
GGCTGCCGCCGTTGACTACTGCATCCCGACCTTTGAGAAGAAGATGTTCA
GTATGCTTACCGACGAGTTGAAGGCGCAAATGCAGTGTGAGCCTGAGCGC
AAGACCGTGGTCTTGTTCGGGATCGAGGCCCACGTCTGCGTGCAGCAAAC
CGCCCTGGACCTGCTAGAGCAAGGTTACGCCGTGCACATTCTTGTGGACG
GCGTCTCGTCCCAGAAAGCGCATGACCGTGCGGTGGCCTTGCGCAGGATG
GAAAAGGCAGGCGCATTTTTGACGACGGCAGAGAGTTTAGTCTTTATGCT
GATGCAAACTGCGTCGCATCCGCAGTTCAAGACAATTTCCTTTTTGATCA
AGGAGCATGCCGGAGAACCCAATCCCTTCAATGATTTATTGAAAGAAAAT
TCAGCGCTTTGAGTAATCCGCACGGCCAAGTTCATGACGGCAGTCGGTCA
AGAGTTACAGATCCCTACCTTAGCCTCAGAGCAGTATCCCAAAGCCTTTG
GCGCCACGATGTATAACTTACATCCCGCGCGTAAAAGCACAGAACTTCGT
ACCTACTTCGCTACCATGACCGCATCAAACGTAGCCCGCGCCATAGGCAA
GCTGCAGCCGAAGACCACAACTTTCCTGCTTTGCGATGTTCAAGAGCGGT
TCCGCGATGTGATTTGGCACTTCCCCCAG
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Synonyms
Publications