EWM28514.1, cds2160 (CDS) Nannochloropsis gaditana

Overview
NameEWM28514.1
Unique Namecds2160
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1059664..1059834 -
Alignment locationCM002458.1:1059451..1059546 -
Alignment locationCM002458.1:1058803..1059228 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28514.1
ProductIsochorismatase
Orig transcript idgnl|cribi|Naga_100131g6.7459.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1059664..1059834 -
CM002458.1supercontigCM002458.1:1059451..1059546 -
CM002458.1supercontigCM002458.1:1058803..1059228 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR000868Isochorismatase-like
Homology
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|585110931|gb|EWM28514.1| (Isochorismatase [Nannochloropsis gaditana])

HSP 1 Score: 479.559 bits (1233), Expect = 2.479e-171
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
Query:    1 MYNLHPARKSTELRTYFATMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFNDLLKENSAL 230
            MYNLHPARKSTELRTYFATMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFNDLLKENSAL
Sbjct:    1 MYNLHPARKSTELRTYFATMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFNDLLKENSAL 230          
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|298705933|emb|CBJ29063.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 224.557 bits (571), Expect = 5.017e-70
Identity = 110/212 (51.89%), Postives = 148/212 (69.81%), Query Frame = 0
Query:    7 ARKSTELRTYFATMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAV--DYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGE 216
            AR S+++      M  +  +R +GK+ P +T F  CDVQERFRD+I + P VI TAKFM  V QEL++P + +EQYPKA   TVPEL          +P FEKK+FSM T E++ +++  P+RK  VLFGIEAHVCV QT LDLL+ GY VH++ DGVSSQK HDRAVAL+RM+++GAFLT+AE + F L+ TA + +F+ +S L+K+   E
Sbjct:   52 ARASSDIPV--VEMAVATASRRLGKIFPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAE 261          
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|1072231662|gb|OEU16394.1| (Isochorismatase hydrolase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 219.935 bits (559), Expect = 4.940e-69
Identity = 108/195 (55.38%), Postives = 136/195 (69.74%), Query Frame = 0
Query:   28 AIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYC-IPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFN 221
            ++GKL+P+ T FLLCD+Q+RFR + W    +I TAK+MT+V +EL IP + ++QY K FG TV +  A    +     FEKK FSM TDE+K+ MQ    R +VV+FGIEAHVCVQQT LDLLE G  VHI+ D VSSQ+ +DR +AL RM +AGAFLTTA+S  FMLMQ+A H  FK +S L  EH   PN FN
Sbjct:   19 SVGKLKPENTVFLLCDIQDRFRPLTWRGETIINTAKYMTSVAKELDIPIVITQQYTKVFGETVKDTFADQEHFASCKIFEKKRFSMCTDEVKSHMQT-LNRDSVVIFGIEAHVCVQQTCLDLLEDGKEVHIIADSVSSQQPYDRELALNRMSQAGAFLTTAQSAAFMLMQSAEHANFKAVSKLTVEHMKLPNEFN 212          
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|397636078|gb|EJK72134.1| (hypothetical protein THAOC_06363, partial [Thalassiosira oceanica])

HSP 1 Score: 220.32 bits (560), Expect = 1.325e-67
Identity = 109/207 (52.66%), Postives = 141/207 (68.12%), Query Frame = 0
Query:   19 TMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDY---CIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFND 222
            TM+    AR++GKL P  +  L+CDVQERFR +I     VI T KFMT V ++L IP +A+EQY K FG T+P+  A   D      P FEKK FSM+TDE+ + ++    R + +L GIEAHVC+QQTALDLLE G  VHI+ DGVSSQ+ +DR +ALRR+E +GAFLTTA+S  FML+ +A H  FK +S L+K H   PN FN+
Sbjct:  124 TMSLQAAARSVGKLSPSNSVLLVCDVQERFRPLISKMETVINTTKFMTGVAKKLHIPMVATEQYSKVFGKTIPDSFADPSDIGSTSCPVFEKKKFSMITDEVASHLE-SLGRSSYLLVGIEAHVCLQQTALDLLEAGNDVHIVADGVSSQQTYDREMALRRLETSGAFLTTAQSAAFMLLGSADHADFKAVSKLVKAHMALPNEFNE 329          
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|219119401|ref|XP_002180462.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407935|gb|EEC47870.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 214.542 bits (545), Expect = 5.100e-67
Identity = 106/206 (51.46%), Postives = 145/206 (70.39%), Query Frame = 0
Query:   19 TMTASNVARA--IGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDY-CIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFN 221
            ++TAS  A    +GKLQP++T  LLCD+QERFR +I +   V+ T ++MT+VG+ L +P LA++QY K FG TVP+  A   D   IP F+KK FSMLT+++   +  E ++ T ++ GIEAHVCVQQT LDLLE+G  VH++ D VSSQ+A+DR +AL+R++ AG FLTTA+S  FML+Q+A H  FK +S L  EH   PN FN
Sbjct:    2 SITASKAASRLFVGKLQPESTALLLCDMQERFRPLIHNMETVVNTCRYMTSVGKALNVPVLATQQYTKVFGETVPDCFADPQDLQTIPNFDKKKFSMLTEDVDRVLD-EWKKDTYIIMGIEAHVCVQQTCLDLLERGANVHVIADAVSSQQAYDREIALQRLQAAGCFLTTAQSAAFMLLQSADHSNFKAVSKLTVEHMKLPNEFN 206          
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|1210512678|dbj|GAX28268.1| (hypothetical protein FisN_27Hh081 [Fistulifera solaris])

HSP 1 Score: 213.386 bits (542), Expect = 1.866e-66
Identity = 113/207 (54.59%), Postives = 140/207 (67.63%), Query Frame = 0
Query:   27 RAIG-KLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPT----FEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFNDLLKENS 228
            R +G KL P  T  L+CDVQERFR +IW    V+RT ++MT +   L IP + +EQY KAFG T+ E  A   +  IP+    FEKK FSMLT  L  Q+Q  PER T VL GIEAHVCVQQT LDLL     VH++ DG+SSQ+ +DR +AL+RM++AGAFLTTA+S  FMLMQTA HPQFK  S L  EH  + N FND  +++S
Sbjct:    5 RILGNKLHPGKTVLLVCDVQERFRSLIWRCETVVRTTQYMTRLAALLDIPVVVTEQYKKAFGPTIAECFA---ENTIPSTAHVFEKKQFSMLTPPLLQQLQQYPERDTFVLVGIEAHVCVQQTCLDLLALQKEVHLVADGISSQQPYDREIALQRMQQAGAFLTTAQSAAFMLMQTADHPQFKAFSQLTVEHMKKRNEFNDDYQKSS 208          
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|223997442|ref|XP_002288394.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975502|gb|EED93830.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 208.764 bits (530), Expect = 8.603e-65
Identity = 105/203 (51.72%), Postives = 136/203 (67.00%), Query Frame = 0
Query:   22 ASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDY--CIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNPFND 222
            A   +RA+G+L P  +  L+CD+QE FR +I++   VI T+KFMT V +EL +P + S+QY K FG T+ +  A   D    +  FEKK FSMLT E    +     R + +L GIEAHVC+QQT LDLLEQG+ VHI+ DGVSSQ+ +DR +ALRR E AGAF+TTA+S  FMLM TA HP FK +S L+KEH    N FN+
Sbjct:    4 AVTASRAVGRLSPSKSVLLVCDIQELFRPLIYNMETVINTSKFMTGVAKELDVPVVLSQQYTKVFGPTITDAIADPKDIGTTVVPFEKKKFSMLTPECSEHLT-SLGRTSFLLVGIEAHVCLQQTVLDLLEQGHDVHIIADGVSSQQKYDREMALRRCEGAGAFVTTAQSAAFMLMGTADHPNFKAVSKLVKEHMKLKNEFNE 205          
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|1129171929|gb|OLP81730.1| (Isochorismatase domain-containing protein 1 [Symbiodinium microadriaticum])

HSP 1 Score: 203.756 bits (517), Expect = 2.875e-61
Identity = 99/187 (52.94%), Postives = 131/187 (70.05%), Query Frame = 0
Query:   28 AIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHA 214
            ++G+L+P +T FLLCDVQERFRDVI   P+VI  AK M   G+ L IP + +EQYPKA G TVPEL  +  +     FEK  FSM TDE  A +    ++K  V+FG+E HVCVQQTA DLL +G+ VH+L DGVSSQ+A DR VAL+R+ +AG F+TTAES +F L+++   PQFK +S ++K + 
Sbjct:    6 SLGRLEPASTVFLLCDVQERFRDVIDRMPEVIAAAKAMMDAGEALSIPIIITEQYPKALGHTVPELDVSKAN----VFEKTKFSMCTDEFLAYLA-SLDKKDAVIFGVETHVCVQQTAFDLLSKGFQVHVLADGVSSQRAPDREVALQRLRQAGCFVTTAESALFELLRSKDAPQFKAVSGVVKAYG 187          
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|552811201|ref|XP_005843403.1| (hypothetical protein CHLNCDRAFT_49249 [Chlorella variabilis] >gi|307103036|gb|EFN51301.1| hypothetical protein CHLNCDRAFT_49249 [Chlorella variabilis])

HSP 1 Score: 196.438 bits (498), Expect = 4.770e-60
Identity = 100/192 (52.08%), Postives = 127/192 (66.15%), Query Frame = 0
Query:   28 AIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGEPNP 219
             +GKL  + T  L+CDVQERFR VI  FP VI T+K M      LQ+P + +EQYPKA G TV EL+   +    P   K +FSM T+E+ A  Q  P  K V++ GIE HVCV QT+LDLLE+GY VH+LVDGVSSQ+  DR+VAL+R+ ++GAFL T+E + F +M+  SHP FK IS L KE   E  P
Sbjct:    9 GVGKLAAEETALLVCDVQERFRPVITGFPAVIDTSKRMLRAAAALQLPVIVTEQYPKALGNTVEELREF-IPQGAPVVAKTLFSMCTEEVNAAFQALPGVKKVLIVGIETHVCVLQTSLDLLERGYEVHVLVDGVSSQRLGDRSVALQRLAQSGAFLATSEMVCFQMMKNTSHPAFKAISALAKEARPEQLP 199          
BLAST of EWM28514.1 vs. NCBI_GenBank
Match: gi|1210524860|dbj|GAX16369.1| (hypothetical protein FisN_27Lh081 [Fistulifera solaris])

HSP 1 Score: 196.052 bits (497), Expect = 1.563e-59
Identity = 106/202 (52.48%), Postives = 137/202 (67.82%), Query Frame = 0
Query:   27 RAIG-KLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAVDYCIPT---FEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLE-QGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEH-AGEPNPFND 222
            R +G KL P  T  L+CD+QERFR +IW    V++T ++MT +   L+IP + +EQY KAFG+T+ E    A D   PT   FEKK FSMLT  +  Q++  PER T +L GIEAHVCVQQT LDLL  Q   VH++ DG+SSQ+ +DR +AL+RM++AGA +TTA+S  FMLMQTA HPQFK  S L  EH   + N FN+
Sbjct:    5 RILGNKLHPAQTVLLVCDIQERFRSLIWRGETVVQTTQYMTRLAALLEIPVVVTEQYKKAFGSTITE--CFAHDERPPTTHVFEKKQFSMLTPPVLEQLRQYPERDTYLLVGIEAHVCVQQTCLDLLTLQKKQVHLIADGISSQQPYDREIALQRMQQAGALVTTAQSAAFMLMQTADHPQFKAFSQLTIEHMKKKSNEFNE 204          
The following BLAST results are available for this feature:
BLAST of EWM28514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110931|gb|EWM28514.1|2.479e-171100.00Isochorismatase [Nannochloropsis gaditana][more]
gi|298705933|emb|CBJ29063.1|5.017e-7051.89conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072231662|gb|OEU16394.1|4.940e-6955.38Isochorismatase hydrolase [Fragilariopsis cylindru... [more]
gi|397636078|gb|EJK72134.1|1.325e-6752.66hypothetical protein THAOC_06363, partial [Thalass... [more]
gi|219119401|ref|XP_002180462.1|5.100e-6751.46predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210512678|dbj|GAX28268.1|1.866e-6654.59hypothetical protein FisN_27Hh081 [Fistulifera sol... [more]
gi|223997442|ref|XP_002288394.1|8.603e-6551.72predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1129171929|gb|OLP81730.1|2.875e-6152.94Isochorismatase domain-containing protein 1 [Symbi... [more]
gi|552811201|ref|XP_005843403.1|4.770e-6052.08hypothetical protein CHLNCDRAFT_49249 [Chlorella v... [more]
gi|1210524860|dbj|GAX16369.1|1.563e-5952.48hypothetical protein FisN_27Lh081 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2168rna2168Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications