rna2160, rna2160 (mRNA) Nannochloropsis gaditana

Overview
Namerna2160
Unique Namerna2160
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1397
Alignment locationCM002458.1:1027038..1028396 +

Link to JBrowse

Properties
Property NameValue
Productribosome maturation protein sbds
Orig transcript idgnl|cribi|Naga_100131g15.7462.mrna
Orig protein idgnl|cribi|Naga_100131g15.7462
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1027038..1028396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100131g15gene2063Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2160rna2160-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28517.1cds2152Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2160 ID=rna2160|Name=rna2160|organism=Nannochloropsis gaditana|type=mRNA|length=1397bp
CTACTAGCCCGCTCAGATAGAATAGAAGGCCATCAAGGTTAAGCCTTTTT
ATATCAATTTGTAGAATTCCCGACTTTCGGTCCGCCTTTTCCGCTTGATC
CTTCATAAACATTATTTTATCGGTCAGTCTACGCTCTCTAGGATACTCGC
TAGAGCTCTCCGTATGAGAGGCGGCAACTGCATTTCCTCTTTTATCTCAC
AGCACTTCACTTCCTCACTCGCAGCTCCAATTATCCCTTCAAAAGACACG
ACAGGTATGCAGAGCGGAAGCAGCGGTGTCAGACCTAATGAGTCTCCACC
ATCATGTACGGACGAACCACCAACCTCCCCACCCCCCTTCCGAAAGAAGC
CTATCGTTCTCTTATTCATGGGTATGGCAGGAAGCGGCAAAACTACGCTT
GTGCAGCGTCTCAATCTAGAGCTTAACAGTCAGGGTACGAAAAGCTATTA
CGTGAACCTTGACCCGGCCGTAAAGTCTGTGCCATTCGCCGCAAACATCG
ACATCCGCGACACTGTGAACTACAAAGAAGTCATGAAGCAGTATGAATTA
GGACCTAATGGCGCCATTATGACCAGTCTTAATCTCTTTGCAACACGATT
CGATCAAGTCTTGAGCATTTTGGAGAAACGCGCCCCTGACCTTGAGTACG
TACTGGTTGATACACCTGGACAGATCGAGGTTTTCACATGGTCCGCCTCG
GGGGCCATTATAACGGAGGCACTCGCCTCCTCATTCCCCACGCTTCTCGT
CTACGTAGTGGACACACCTCGCACATCGTCACCGACTACATTCATGAGCA
ACATGCTCTACGCGTGCTCGATTCTGTACAAGACGCGCCTTCCTATCGTC
CTGACATTCAATAAGACCGACATCCTCTCCCACACCTTTGCTGTTGACTG
GATGGAGGACTTTGAAAAATTCCAAGAGGGACTGGATCGTCAGGGGGAGG
ACATGGGGTATATGTCCACTCTCATTCGGTCGATGAGCCTCGTGTTGGAC
GAATTTTACAAGACTCTCAGGAAAGTGGGCGTATCCGCCGCTAGCGGAGA
TGGAATCGATGTGTTCTTCAGGGCTGTCGACGAGGCGGCGGAGGAATTTG
CGCGAGACTACCTCCCAGATATGCTGGCACGAAAAGCAGAGAGTGTAAGG
GAGGAAGACGGGAGACGGGGTAAGGAGATGGCGAGGCTGATGAAAGACTT
GCGTATGGAAGGGGAAAGGGGAGAAGGAGGAGGAGGAGAGGGAGAAGGAG
GGGAGGGAGAAGGGGGGAAGCAGGTAGAGGGGAAGAAGAAAAGAAAGGAT
GATGAGAGAGAAGAAAAGTAGGATCGGCAATTGTAGAACATAAAGGATTG
TCTCTCGTTTGGTTGTTATGGCGCCGATAAAAAAGGACACGTCGCCC
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protein sequence of rna2160

>rna2160-protein ID=rna2160-protein|Name=rna2160|organism=Nannochloropsis gaditana|type=polypeptide|length=452bp
MSRRIGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDID
EVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDK
EREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTR
GAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTEDLAQVIKGMASFGIDG
NTVEATGKKEEVDLLVDPGLFRRVDELVRGKGKGALHVLELNVQQEGEAD
VDLEIARKAAMRKEQRDESAVANTCKAFEEAQEREGRKETDQEGEAGFLR
GANVKAHGDEDSVVEGAEEHVDKQGRVSRGSKKSKAARRREKEIFREREL
RKEEECKRRERQGEERPKSEESNKKGGGSERGSWEKARPGSNRLACNTCR
VDFQDAKEYREHYRTDWHRYNLKLKEKGGGPVSEAEFELVDADEMFCSYR
DI
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mRNA from alignment at CM002458.1:1027038..1028396+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2160 ID=rna2160|Name=rna2160|organism=Nannochloropsis gaditana|type=mRNA|length=1359bp|location=Sequence derived from alignment at CM002458.1:1027038..1028396+ (Nannochloropsis gaditana)
ATGTCGCGACGCATTGGACAGCCTGTAAACCAAGTGCGGTTGACAAATGT
AGCTATGGTACGGATACATAAGGGTGGGAAGCGTTTTGAAATTGCATGTT
ACCGCAATAAGGTCTTGAGCTGGCGGCaaggggtggagaaggacATCGAC
GAGGTGCTTCAAACCCACGCCATTTTCCTGAACGTGAGTAAAGGTGTTCT
GGCCAGCAGCAAGGACTTGATGGATTGTTTCGGTCAAGAGGATGTAGAGG
CCTTGTTGCGGCTTATTTTAGAAAAGGGCGAGTATCATCCTTCAGataag
gagagggaggccatgCATGAAAGCTTATACCGAGATATCGCCACCATAGT
GGCATTAAAAAGCGTGAATCCTACTTCAAATCGCCCTTACACGGTTAACA
TGATATTGAGTGGCATGAAAGACATCCACTTCGCAGTGAACCCGACGCGA
GGGGCCAAGCAACAAGCCTTAGAGGTAATTCGGAGGCTGCAAGATGTCAT
GCCCTTGGAGCGGGCTAAAATGCGCCTGAAAGTGGTCTGTCCGACGACGG
AAGACCTCGCACAGGTAATCAAGGGTATGGCTTCTTTCGGAATTGATGGA
AATACGGTGGAAGCAACgggcaagaaagaagaagtaGACCTATTGGTGGA
TCCGGGATTGTTTCGGAGAGTGGATGAGTTGGTacgaggaaagggcaagg
GTGCCTTGCATGTTCTGGAACTTAATGTgcagcaggaaggagaggcagac
gTCGATCtagaaattgcgcgaaaggcGGCCATGCGGAAAGAACAGAGAGA
TGAGTCCGCGGTAGCCAACACATGTAAGGCGTTCGAAGAAgcgcaagaaa
gggaagggagaaaggaaacggaccaggagggggaggcagggttcCTGAGG
GGGGCGAATGTCAAAGCTCATGGTGATGAAGACAGTGTCGttgaaggggc
agaggaacATGTGGACAAACAGGGTAGGGTAAGCAGAGGCAGCAAGAAAT
CCAAGGCGGCCAGGcgacgggagaaagaaatcTTCCGGGAACGGGAATtg
cgaaaagaagaagaatgcAAACGTAGGGAAcgacagggagaggaacgtCC
GAAATCGGAGGAAAGCaacaagaagggcgggggatcAGAAAGGGGTTCat
gggaaaaagcgaggccCGGGTCGAACCGATTGGCGTGTAACACCTGCCGC
GTGGATTTTCAGGATGCCAAGGAATACCGGGAGCACTACCGCACAGACTG
GCACCGCTACAATTTGAAactgaaagagaaaggcggagggcccgTGTCGG
AGGCAGAATTTGAGCTTGTAGATGCGGATGAGATGTTTTGTAGTTATCGC
GACATTTGA
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Coding sequence (CDS) from alignment at CM002458.1:1027038..1028396+

>rna2160 ID=rna2160|Name=rna2160|organism=Nannochloropsis gaditana|type=CDS|length=1359bp|location=Sequence derived from alignment at CM002458.1:1027038..1028396+ (Nannochloropsis gaditana)
ATGTCGCGACGCATTGGACAGCCTGTAAACCAAGTGCGGTTGACAAATGT
AGCTATGGTACGGATACATAAGGGTGGGAAGCGTTTTGAAATTGCATGTT
ACCGCAATAAGGTCTTGAGCTGGCGGCaaggggtggagaaggacATCGAC
GAGGTGCTTCAAACCCACGCCATTTTCCTGAACGTGAGTAAAGGTGTTCT
GGCCAGCAGCAAGGACTTGATGGATTGTTTCGGTCAAGAGGATGTAGAGG
CCTTGTTGCGGCTTATTTTAGAAAAGGGCGAGTATCATCCTTCAGataag
gagagggaggccatgCATGAAAGCTTATACCGAGATATCGCCACCATAGT
GGCATTAAAAAGCGTGAATCCTACTTCAAATCGCCCTTACACGGTTAACA
TGATATTGAGTGGCATGAAAGACATCCACTTCGCAGTGAACCCGACGCGA
GGGGCCAAGCAACAAGCCTTAGAGGTAATTCGGAGGCTGCAAGATGTCAT
GCCCTTGGAGCGGGCTAAAATGCGCCTGAAAGTGGTCTGTCCGACGACGG
AAGACCTCGCACAGGTAATCAAGGGTATGGCTTCTTTCGGAATTGATGGA
AATACGGTGGAAGCAACgggcaagaaagaagaagtaGACCTATTGGTGGA
TCCGGGATTGTTTCGGAGAGTGGATGAGTTGGTacgaggaaagggcaagg
GTGCCTTGCATGTTCTGGAACTTAATGTgcagcaggaaggagaggcagac
gTCGATCtagaaattgcgcgaaaggcGGCCATGCGGAAAGAACAGAGAGA
TGAGTCCGCGGTAGCCAACACATGTAAGGCGTTCGAAGAAgcgcaagaaa
gggaagggagaaaggaaacggaccaggagggggaggcagggttcCTGAGG
GGGGCGAATGTCAAAGCTCATGGTGATGAAGACAGTGTCGttgaaggggc
agaggaacATGTGGACAAACAGGGTAGGGTAAGCAGAGGCAGCAAGAAAT
CCAAGGCGGCCAGGcgacgggagaaagaaatcTTCCGGGAACGGGAATtg
cgaaaagaagaagaatgcAAACGTAGGGAAcgacagggagaggaacgtCC
GAAATCGGAGGAAAGCaacaagaagggcgggggatcAGAAAGGGGTTCat
gggaaaaagcgaggccCGGGTCGAACCGATTGGCGTGTAACACCTGCCGC
GTGGATTTTCAGGATGCCAAGGAATACCGGGAGCACTACCGCACAGACTG
GCACCGCTACAATTTGAAactgaaagagaaaggcggagggcccgTGTCGG
AGGCAGAATTTGAGCTTGTAGATGCGGATGAGATGTTTTGTAGTTATCGC
GACATTTGA
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Synonyms
Publications