EWM28517.1, cds2152 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28517.1 vs. NCBI_GenBank
Match: gi|585110934|gb|EWM28517.1| (ribosome maturation protein sbds [Nannochloropsis gaditana]) HSP 1 Score: 925.235 bits (2390), Expect = 0.000e+0 Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0 Query: 1 MSRRIGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTEDLAQVIKGMASFGIDGNTVEATGKKEEVDLLVDPGLFRRVDELVRGKGKGALHVLELNVQQEGEADVDLEIARKAAMRKEQRDESAVANTCKAFEEAQEREGRKETDQEGEAGFLRGANVKAHGDEDSVVEGAEEHVDKQGRVSRGSKKSKAARRREKEIFRERELRKEEECKRRERQGEERPKSEESNKKGGGSERGSWEKARPGSNRLACNTCRVDFQDAKEYREHYRTDWHRYNLKLKEKGGGPVSEAEFELVDADEMFCSYRDI 452 MSRRIGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTEDLAQVIKGMASFGIDGNTVEATGKKEEVDLLVDPGLFRRVDELVRGKGKGALHVLELNVQQEGEADVDLEIARKAAMRKEQRDESAVANTCKAFEEAQEREGRKETDQEGEAGFLRGANVKAHGDEDSVVEGAEEHVDKQGRVSRGSKKSKAARRREKEIFRERELRKEEECKRRERQGEERPKSEESNKKGGGSERGSWEKARPGSNRLACNTCRVDFQDAKEYREHYRTDWHRYNLKLKEKGGGPVSEAEFELVDADEMFCSYRDI Sbjct: 1 MSRRIGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTEDLAQVIKGMASFGIDGNTVEATGKKEEVDLLVDPGLFRRVDELVRGKGKGALHVLELNVQQEGEADVDLEIARKAAMRKEQRDESAVANTCKAFEEAQEREGRKETDQEGEAGFLRGANVKAHGDEDSVVEGAEEHVDKQGRVSRGSKKSKAARRREKEIFRERELRKEEECKRRERQGEERPKSEESNKKGGGSERGSWEKARPGSNRLACNTCRVDFQDAKEYREHYRTDWHRYNLKLKEKGGGPVSEAEFELVDADEMFCSYRDI 452
BLAST of EWM28517.1 vs. NCBI_GenBank
Match: gi|340373331|ref|XP_003385195.1| (PREDICTED: ribosome maturation protein SBDS-like [Amphimedon queenslandica]) HSP 1 Score: 263.848 bits (673), Expect = 1.393e-82 Identity = 139/250 (55.60%), Postives = 177/250 (70.80%), Query Frame = 0 Query: 5 IGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTE--DLAQVIKGMASFGIDGNTVEATGKKEEVDL--LVDPGLFRRVDELVRG--KGKGALHVLELNVQQEGE 248 I P NQ+RLTNVA+VRI KGGKRFEIACY+NKV+SWR VEKDIDEVLQTH +F NVSKG +A DL FG ED + + IL KGE S++ER++ ESL+RDI+TIVA K VNP + RPYTV MI MKD+H+AV PTR AKQQ+L+VIR L+D MPLERA+MRLK+V P E + + I G+ + +VE + ++++ L+DPG FR +DE+VRG KG G + VL L +EG+ Sbjct: 3 IFTPTNQIRLTNVAIVRIKKGGKRFEIACYKNKVVSWRNKVEKDIDEVLQTHTVFNNVSKGQVAKRDDLASAFGTEDQTEICKTILSKGELQISERERQSQLESLFRDISTIVADKCVNPDTKRPYTVGMIERAMKDVHYAVKPTRSAKQQSLDVIRLLKDHMPLERARMRLKLVLPVKEARKVREKIVGLLA------SVEQEDWRPQLEIVCLIDPGRFREIDEIVRGDTKGSGIVEVLNLKDVEEGD 246
BLAST of EWM28517.1 vs. NCBI_GenBank
Match: gi|499037982|ref|XP_004569637.1| (PREDICTED: ribosome maturation protein SBDS [Maylandia zebra] >gi|554844564|ref|XP_005932642.1| PREDICTED: ribosome maturation protein SBDS [Haplochromis burtoni] >gi|584021181|ref|XP_006805267.1| PREDICTED: ribosome maturation protein SBDS-like [Neolamprologus brichardi]) HSP 1 Score: 260.766 bits (665), Expect = 2.264e-81 Identity = 133/250 (53.20%), Postives = 177/250 (70.80%), Query Frame = 0 Query: 5 IGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTED--LAQVIKGMASFGIDGNTVEATGKKEEVDL--LVDPGLFRRVDELVR--GKGKGALHVLELNVQQEGE 248 I P NQ+RLTNVA+VR+ KGGKRFEIACY+NKV+SWR G EKD+DEVLQTH++F+NVSKG +A DL FG +D+ + + IL KGE SDKER+ E+++RDIATIVA K VNP + RPYTV++I MKDIH++V P + KQQALEVIR+L++ M ++RA MRL++V P E L + +K + VE+ EE+++ LVDPG FR +DEL+R KG+G+L VL L +EG+ Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQTQLETMFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVLPAKEAKRLKEKLKPLL------QVVESEDFDEELEMVCLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 246
BLAST of EWM28517.1 vs. NCBI_GenBank
Match: gi|348544039|ref|XP_003459489.1| (PREDICTED: ribosome maturation protein SBDS [Oreochromis niloticus]) HSP 1 Score: 259.996 bits (663), Expect = 3.971e-81 Identity = 132/250 (52.80%), Postives = 178/250 (71.20%), Query Frame = 0 Query: 5 IGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTED--LAQVIKGMASFGIDGNTVEATGKKEEVDL--LVDPGLFRRVDELVR--GKGKGALHVLELNVQQEGE 248 I P NQ+RLTNVA+VR+ KGGKRFEIACY+NKV+SWR G EKD+DEVLQTH++F+NVSKG +A DL FG +D+ + + IL KGE SDKER++ E+++RDIATIVA K VNP + RPYTV++I MKDIH++V P + KQQALEVIR+L++ M ++RA MRL++V P E L + +K + VE+ EE+++ LVDPG FR +DEL+R +G+G+L VL L +EG+ Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQSQLETMFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVLPAKEAKRLKEKLKPLL------QVVESEDFDEELEMVCLVDPGCFREIDELIRCETRGRGSLEVLSLKDVEEGD 246
BLAST of EWM28517.1 vs. NCBI_GenBank
Match: gi|548439257|ref|XP_005745081.1| (PREDICTED: ribosome maturation protein SBDS [Pundamilia nyererei]) HSP 1 Score: 259.61 bits (662), Expect = 5.673e-81 Identity = 132/250 (52.80%), Postives = 177/250 (70.80%), Query Frame = 0 Query: 5 IGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTED--LAQVIKGMASFGIDGNTVEATGKKEEVDL--LVDPGLFRRVDELVR--GKGKGALHVLELNVQQEGE 248 I P NQ+RLTNVA+VR+ KGGKRFEIACY+NKV+SWR G EKD+DEVLQTH++F+NVSKG +A DL FG +D+ + + IL KGE SDKER+ E+++RDIATIVA K VNP + RPYTV++I MKDIH++V P + KQQALEVIR+L++ M ++RA MRL++V P E L + +K + VE+ EE+++ LVDPG FR +DEL+R +G+G+L VL L +EG+ Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQTQLETMFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVLPAKEAKRLKEKLKPLL------QVVESEDFDEELEMVCLVDPGCFREIDELIRCETRGRGSLEVLSLKDVEEGD 246
BLAST of EWM28517.1 vs. NCBI_GenBank
Match: gi|742081817|ref|XP_010900947.1| (PREDICTED: ribosome maturation protein SBDS [Esox lucius]) HSP 1 Score: 259.61 bits (662), Expect = 7.045e-81 Identity = 136/252 (53.97%), Postives = 171/252 (67.86%), Query Frame = 0 Query: 5 IGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPT------TEDLAQVIKGMASFGIDGNTVEATGKKEEVDLLVDPGLFRRVDELVR--GKGKGALHVLELNVQQEGE 248 I P NQ+RLTNVA+VR+ KGGKRFEIACY+NKV+SWR G EKD+DEVLQT ++F NVSKG +A DL FG +D+ + + IL KGE SDKER++ E+ YRDIATIVA K VNP + RPYTVN+I MKDIH++V P + KQQALEVIR+L+D M ++RA MRL++V P E L +IK M S D E+ LVDPG +R +DEL+R KGKG+L VL L +EG+ Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVISWRSGAEKDLDEVLQTSSVFNNVSKGQVAKKDDLSKAFGTDDLTEICKQILAKGELQVSDKERQSQLETSYRDIATIVAEKCVNPETKRPYTVNLIERAMKDIHYSVKPNKSTKQQALEVIRQLKDSMEIQRAHMRLRLVLPAKDGKRLKEKLKPLIKVMESEDFDDQL--------EMVCLVDPGCYREMDELIRCETKGKGSLEVLSLKDVEEGD 246
BLAST of EWM28517.1 vs. NCBI_GenBank
Match: gi|241999438|ref|XP_002434362.1| (ribosome maturation protein SBDS, putative [Ixodes scapularis] >gi|215497692|gb|EEC07186.1| ribosome maturation protein SBDS, putative [Ixodes scapularis]) HSP 1 Score: 259.225 bits (661), Expect = 1.098e-80 Identity = 132/247 (53.44%), Postives = 178/247 (72.06%), Query Frame = 0 Query: 5 IGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTEDLAQVIKGMASFGIDGNTVE-ATGKKEEVDLLVDPGLFRRVDELVR--GKGKGALHVLELNVQQEGE 248 I P NQ+RLTNVA+VR+ KGGKRFEIACY+NKV++WR VEKDIDEVLQTH ++ NVSKG A +DL+ CFG ED + + IL KGE S+KER + ES +RDIAT+VA K VNP + RPY +++I M+++HF+V P + AKQQ+LEVIR+L++VMP+ER++M+L+VV P + ++K +AS I+ + ++ ATG+ E V L DPG FR VDELV +GKG L V+ L EG+ Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVVAWRSDVEKDIDEVLQTHTVYTNVSKGQAAKKEDLIKCFGSEDQTKICKEILSKGELQVSEKERHSQLESSFRDIATLVADKCVNPDTKRPYPMSIIEKSMREMHFSVKPNKSAKQQSLEVIRQLKEVMPIERSQMKLRVVVPNGKKARPLLKALAS-SIEQDVIQGATGELEMV-FLTDPGNFRAVDELVSKESRGKGQLEVISLKEVLEGD 247
BLAST of EWM28517.1 vs. NCBI_GenBank
Match: gi|410910366|ref|XP_003968661.1| (PREDICTED: ribosome maturation protein SBDS [Takifugu rubripes]) HSP 1 Score: 258.455 bits (659), Expect = 1.690e-80 Identity = 131/250 (52.40%), Postives = 178/250 (71.20%), Query Frame = 0 Query: 5 IGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTED--LAQVIKGMASFGIDGNTVEATGKKEEVDL--LVDPGLFRRVDELVR--GKGKGALHVLELNVQQEGE 248 I P NQ+RLTNVA+VR+ KGGKRFEIACY+NKV+SWR G EKD+DEVLQTH++F+NVSKG +A DL FG +D+ + + IL KGE SDKER+A E+++RDIATIVA K VNP + RPYTV++I MKDIH++V ++ KQQALEVIR+L++ M ++RA MRL++V P E L + +K + VE+ E++++ LVDPG FR +DEL+R KG+G+L V+ L +EG+ Sbjct: 3 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILTKGELQVSDKERQAQLETMFRDIATIVAEKCVNPDTKRPYTVSLIERAMKDIHYSVKASKSTKQQALEVIRQLKETMEIQRAHMRLRLVLPAKEAKRLKEKLKPLL------QVVESEDFDEDLEMVCLVDPGCFREIDELIRCETKGRGSLEVISLKDVEEGD 246
BLAST of EWM28517.1 vs. NCBI_GenBank
Match: gi|156553811|ref|XP_001604171.1| (PREDICTED: ribosome maturation protein SBDS [Nasonia vitripennis]) HSP 1 Score: 258.455 bits (659), Expect = 2.033e-80 Identity = 137/256 (53.52%), Postives = 175/256 (68.36%), Query Frame = 0 Query: 4 RIGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTEDLAQVIKGMASFGIDGNTVEATGKKE-------EVDL--LVDPGLFRRVDELVRG--KGKGALHVLELNVQQEGE 248 +I PVNQ+RLTNVA+VR+ K GKRFEIACYRNKV+SWR +EKDIDEVLQTH +F+NVSKG +A +DL+ FG++D + + ILEKGE SDKER + +S+++DIAT VA K VNP S RPY+V++I MKDIHF+V P R AKQQALEVI +L+ VMPLERA+MRL+V ++ G + + V+ T K E +DL L+DPG +R +DELVR KG G L +L L EGE Sbjct: 3 KIFTPVNQIRLTNVAVVRMKKAGKRFEIACYRNKVISWRNKLEKDIDEVLQTHTVFMNVSKGQVAKKEDLIKAFGKDDQTEICKEILEKGELQVSDKERHSALDSMFKDIATTVADKCVNPESKRPYSVSLIEKAMKDIHFSVKPNRNAKQQALEVITQLKTVMPLERAQMRLRV----------LVSGKEARKLREKIVKLTTKVESEDWNSGSLDLVCLIDPGHYREIDELVRAETKGSGVLELLNLKEITEGE 248
BLAST of EWM28517.1 vs. NCBI_GenBank
Match: gi|657593280|ref|XP_008301204.1| (PREDICTED: ribosome maturation protein SBDS [Stegastes partitus]) HSP 1 Score: 259.61 bits (662), Expect = 2.505e-80 Identity = 133/250 (53.20%), Postives = 177/250 (70.80%), Query Frame = 0 Query: 5 IGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTED--LAQVIKGMASFGIDGNTVEATGKKEEVDL--LVDPGLFRRVDELVR--GKGKGALHVLELNVQQEGE 248 I P NQ+RLTNVA+VR+ KGGKRFEIACY+NKV+SWR G EKD+DEVLQTH++F+NVSKG +A DL FG +D+ + + IL KGE SDKER++ E+++RDIATIVA K VNP + RPYTVN+I MKDIH++V + KQQALEVIR+L++ M ++RA MRL++V P E L + +K + VE+ EE+++ LVDPG FR +DEL+R KG+G+L VL L +EG+ Sbjct: 42 IFTPTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQSQLETMFRDIATIVAEKCVNPDTKRPYTVNLIERAMKDIHYSVKANKSTKQQALEVIRQLKETMEIQRAHMRLRLVLPAKEAKRLKEKLKPLL------QVVESEDFDEELEMVCLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 285 The following BLAST results are available for this feature:
BLAST of EWM28517.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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