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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100009g23.628.mrna |
| Orig protein id | gnl|cribi|Naga_100009g23.628 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:962607..965056 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2138 ID=rna2138|Name=rna2138|organism=Nannochloropsis gaditana|type=mRNA|length=2040bp
CTCCAACGTTGGGCATGGCATTGTCAGCGTCACCTGCCTTGCTGGTTGGA
TTGCTTTTTCTGCTTGCCGTGACATGGAAGGGCTCGGCGGCAGGAGCGGC
AGAGGTCGTACCCGACCAGTGGCGCGAGTTTGAGGTACCTGTCGTGCCGG
AAGACAAGGACTACACACAAATCAAGTTAAACCGACTGCGCGACGAATAT
GTAGCCGTGAATCGACAAACAGACCCTGCCATCACTGCCGAGCTCCTGGT
AGGAGACATGCTGGAGAGCAAGGGATATACCCCCGAGGAAATTTATGCGG
TGCAAGGGGTGGTGGCGGTATTGGTTAATGCCGGTGTTCTAACGGTCCAT
GCCGAGAAACTTGAGGCTGCCGACCTGTCCGAGCTGACCACGGCCACAAG
CACCACGGGAACTCCTAAGCGCCGGCTTCAAAGCAACGTCGGTTGCTGCC
CCTGTAGCCCGGATCGCCACACAAATCCTCCAAACTTGGTTCACACGAAA
GACGAGGAAATCAAGCACGTCGCTTTTAACTTGACTGACGACGGCGCTAG
CCCGCCTGCCCACCCCATGAACGCGGCTCCCACGCCGGACAGGACAGACC
CCAGGGCTTGCGAACGGACGCTGTTGGGTTGTGAAAAGAAAAGCGTGCAA
CTAGCGGCGGATCGGCGTTCGATGTATAAGTCTATGAAAGCCATGGGGCA
GGCTCTCCGACGCACTGCAGCTGCTCGTTCCTATTACTTGTTCGTCAAGG
ACGAAGTTCACAGTTTTGAAGACTTTGAGGCGTTGAGCAAGTCGGAGCAG
GAGGCGACACGACAAGAACTGGCGACCCAGCTACTGTTGACATGCAAAGA
ATACGGACTGCAGGGGGTCGAGCTGCAGGAATATGCGCGTGCCTTGGGCA
TGGAGGTGCCTGACTTGACCAAAACCTCTGACGCGGAGCTGGAGAACTTA
GGAAGAGAGATGGCGGCACAACACCTGCTTGAAAATGTCGCAAAATCCAT
GGGGAAGGACCTGGGAAAAGAGGGCTTGGTGCGATTTCGGGACACGTTCG
GGGACGCCGCCCTGCGTCGTATCGGTGTGGAGCCGTCCCCTGAGGTGTAC
ACCGCCTTCGGAGACTTTGCCACAGAAGCGTCGCGCTTCATCACTTTATC
AAGACAAGCAATGGAGGCTCAAGGAATTCTAGAACCCGGAGCGACTGAGG
CGTACAAGAATGCGACAGCTATCGCCGACAGATTGGCATCTACGTTTGAA
GGGGTGAATGTGACGGACGTGCTCGTCACGGCGACAGGGCTGATGATGGA
TGCGGAGCCCTATCTGACGAATTCGATTGACAACCCCGTGGACGACGCTA
CCCGACAAAAGATGAAAGAGCCTTGGCAAATAATCCTGAAACTAAGCCAA
TTTGAGAAAGCCGCGCAGCAGCAGCGCAAAAGCTTTACCATGAGTCTGAA
AGAAGACAATGTACTTGATGGAATCCTCTTGCTGCATGAAGCCAGCGGCA
CCAGTGTGGAAAGCCCACTAATGCAACAGCTGGATTTTGGGAGAATCGCC
GAGATTACAGAAGATCATATGCTCGACGCGTCCGAATTGAGATTCCTTGT
CCAGAGAGTGGGCGCCTTAAATGAAATTTACGATGTAGACGATTTCGCAG
AGTTGATGGCCGAGGTTGAAGATAACTACCGTATGGTGCACGGGCTGCCA
CCAGTCAGAGAGGAACGGCCGTCTCTTTCGGAATAGAAGGCATTGCTGCA
TACAAGCGCAAAATTAATTGTATAAAATGCCCAAGTTCAGTAGTGACAAG
TGTGGCAAAAGCTCTCTAGAGTCGGGGAGTCACAGAAAAGCTCGTAAGGT
GCACGAGTACATCACGGGATGTGTAGAGTGTGACCGGCATCGTTTCCGCA
AAACACGATGGCAAGAAGGGCGTCATGAGAAATATTCCAAAACAAAATCC
TTAAGGGTGCGCGAAAAACGAGCCCTATCTTACTTTTCTTTACCACCCTG
CGCGGGAAAATATCCCCAATGCTTCTCCCACGTCGACACT back to topprotein sequence of rna2138 >rna2138-protein ID=rna2138-protein|Name=rna2138|organism=Nannochloropsis gaditana|type=polypeptide|length=492bp
MLESKGYTPEEIYAVQGVVAVLVNAGVLTVHAEKLEAADLSELTTATSTT
GTPKRRLQSNVGCCPCSPDRHTNPPNLVHTKDEEIKHVAFNLTDDGASPP
AHPMNAAPTPDRTDPRACERTLLGCEKKSVQLAADRRSMYKSMKAMGQAL
RRTAAARSYYLFVKDEVHSFEDFEALSKSEQEATRQELATQLLLTCKEYG
LQGVELQEYARALGMEVPDLTKTSDAELENLGREMAAQHLLENVAKSMGK
DLGKEGLVRFRDTFGDAALRRIGVEPSPEVYTAFGDFATEASRFITLSRQ
AMEAQGILEPGATEAYKNATAIADRLASTFEGVNVTDVLVTATGLMMDAE
PYLTNSIDNPVDDATRQKMKEPWQIILKLSQFEKAAQQQRKSFTMSLKED
NVLDGILLLHEASGTSVESPLMQQLDFGRIAEITEDHMLDASELRFLVQR
VGALNEIYDVDDFAELMAEVEDNYRMVHGLPPVREERPSLSE back to topmRNA from alignment at CM002458.1:962607..965056- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2138 ID=rna2138|Name=rna2138|organism=Nannochloropsis gaditana|type=mRNA|length=2450bp|location=Sequence derived from alignment at CM002458.1:962607..965056- (Nannochloropsis gaditana)
CTCCAACGTTGGGCATGGCATTGTCAGCGTCACCTGCCTTGCTGGTTGGA
TTGCTTTTTCTGCTTGCCGTGACATGGAAGGGCTCGGCGGCAGGAGCGGC
AGAGGTCGTACCCGACCAGTGGCGCGAGTTTGAGGTACCTGTCGTGCCGG
AAGACAAGGTAAGGACACACAACTCAATACATCTGGTCGGTTTCCTGCCC
ATCAATATTTCTGGGCAAGCCGGGGACATTATGCGACAAAAACGAGACAG
GGGAAAGGGTTTTACGGGTCGGCATTCCTCTGAAACATAATCCCACTACC
TGTTTTGCGTAGTACAAGAGCCTCAGCCATGATGTGCTTTGTCCGCCTTT
CATGAACATGTGTACCTTTTATCTCCCCAGGACTACACACAAATCAAGTT
AAACCGACTGCGCGACGAATATGTAGCCGTGAATCGACAAACAGACCCTG
CCATCACTGCCGAGCTCCTGGTAGGAGACATGCTGGAGAGCAAGGGATAT
ACCCCCGAGGAAATTTATGCGGTGCAAGGGGTGGTGGCGGTATTGGTTAA
TGCCGGTGTTCTAACGGTCCATGCCGAGAAACTTGAGGCTGCCGACCTGT
CCGAGCTGACCACGGCCACAAGCACCACGGGAACTCCTAAGCGCCGGCTT
CAAAGCAACGTCGGTTGCTGCCCCTGTAGCCCGGATCGCCACACAAATCC
TCCAAACTTGGTTCACACGAAAGACGAGGAAATCAAGCACGTCGCTTTTA
ACTTGACTGACGACGGCGCTAGCCCGCCTGCCCACCCCATGAACGCGGCT
CCCACGCCGGACAGGACAGACCCCAGGGCTTGCGAACGGACGCTGTTGGG
TTGTGAAAAGAAAAGCGTGCAACTAGCGGCGGATCGGCGTTCGATGTATA
AGTCTATGAAAGCCATGGGGCAGGCTCTCCGACGCACTGCAGCTGCTCGT
TCCTATTACTTGTTCGTCAAGGACGAAGTTCACAGTTTTGAAGACTTTGA
GGCGTTGAGCAAGTCGGAGCAGGAGGCGACACGACAAGAACTGGCGACCC
AGCTACTGTTGACATGCAAAGAATACGGACTGCAGGGGGTCGAGCTGCAG
GAATATGCGCGTGCCTTGGGCATGGAGGTGCCTGACTTGACCAAAACCTC
TGACGCGGAGCTGGAGAACTTAGGAAGAGAGATGGCGGCACAACACCTGC
TTGAAAATGTCGCAAAATCCATGGGGAAGGACCTGGGAAAAGAGGGCTTG
GTGCGATTTCGGGACACGTTCGGGGACGCCGCCCTGCGTCGTATCGGTGT
GGAGCCGTCCCCTGAGGTGTACACCGCCTTCGGAGACTTTGCCACAGAAG
CGTCGCGCTTCATCACTTTATCAAGACAAGCAATGGAGGCTCAAGGAATT
CTAGAACCCGGAGCGACTGAGGCGTACAAGAATGCGACAGCTATCGCCGA
CAGATTGGCATCTACGTTTGAAGGGGTGAATGTGACGGACGTGCTCGTCA
CGGCGACAGGGCTGATGATGGATGCGGAGCCCTATCTGACGAATTCGATT
GACAACCCCGTGGACGACGCTACCCGACAAAAGATGAAAGAGCCTTGGCA
AATAATCCTGAAACTAAGCCAATTTGAGAAAGCCGCGCAGCAGCAGCGCA
AAAGCTTTACCATGAGTCTGAAAGAAGACAATGTACTTGATGGAATCCTC
TTGCTGCATGAAGCCAGCGGCACCAGTGTGGAAAGCCCACTAATGCAACA
GCTGGATTTTGGGAGAATCGCCGAGATTACAGAAGGTAAGAGCCCGGTTA
AGATGCGAAAAAAGTAGCGTGGGGAAGTAGGCGTTGAAGTTATGATTATG
CCGAGCTAAAAAAAACAAGGTTGGGAACAACCAAGTCACTTTATGAATAA
TTTGAAGTCGATGTCTGTGCAATTCTGCACGTGGATTTCTCACTTTAAAA
TCATCCAATCTCTTTTAAACCAGATCATATGCTCGACGCGTCCGAATTGA
GATTCCTTGTCCAGAGAGTGGGCGCCTTAAATGAAATTTACGATGTAGAC
GATTTCGCAGAGTTGATGGCCGAGGTTGAAGATAACTACCGTATGGTGCA
CGGGCTGCCACCAGTCAGAGAGGAACGGCCGTCTCTTTCGGAATAGAAGG
CATTGCTGCATACAAGCGCAAAATTAATTGTATAAAATGCCCAAGTTCAG
TAGTGACAAGTGTGGCAAAAGCTCTCTAGAGTCGGGGAGTCACAGAAAAG
CTCGTAAGGTGCACGAGTACATCACGGGATGTGTAGAGTGTGACCGGCAT
CGTTTCCGCAAAACACGATGGCAAGAAGGGCGTCATGAGAAATATTCCAA
AACAAAATCCTTAAGGGTGCGCGAAAAACGAGCCCTATCTTACTTTTCTT
TACCACCCTGCGCGGGAAAATATCCCCAATGCTTCTCCCACGTCGACACT
back to topCoding sequence (CDS) from alignment at CM002458.1:962607..965056- >rna2138 ID=rna2138|Name=rna2138|organism=Nannochloropsis gaditana|type=CDS|length=2958bp|location=Sequence derived from alignment at CM002458.1:962607..965056- (Nannochloropsis gaditana)
ATCATATGCTCGACGCGTCCGAATTGAGATTCCTTGTCCAGAGAGTGGGC
GCCTTAAATGAAATTTACGATGTAGACGATTTCGCAGAGTTGATGGCCGA
GGTTGAAGATAACTACCGTATGGTGCACGGGCTGCCACCAGTCAGAGAGG
AACGGCCGTCTCTTTCGGAATAGATGCTGGAGAGCAAGGGATATACCCCC
GAGGAAATTTATGCGGTGCAAGGGGTGGTGGCGGTATTGGTTAATGCCGG
TGTTCTAACGGTCCATGCCGAGAAACTTGAGGCTGCCGACCTGTCCGAGC
TGACCACGGCCACAAGCACCACGGGAACTCCTAAGCGCCGGCTTCAAAGC
AACGTCGGTTGCTGCCCCTGTAGCCCGGATCGCCACACAAATCCTCCAAA
CTTGGTTCACACGAAAGACGAGGAAATCAAGCACGTCGCTTTTAACTTGA
CTGACGACGGCGCTAGCCCGCCTGCCCACCCCATGAACGCGGCTCCCACG
CCGGACAGGACAGACCCCAGGGCTTGCGAACGGACGCTGTTGGGTTGTGA
AAAGAAAAGCGTGCAACTAGCGGCGGATCGGCGTTCGATGTATAAGTCTA
TGAAAGCCATGGGGCAGGCTCTCCGACGCACTGCAGCTGCTCGTTCCTAT
TACTTGTTCGTCAAGGACGAAGTTCACAGTTTTGAAGACTTTGAGGCGTT
GAGCAAGTCGGAGCAGGAGGCGACACGACAAGAACTGGCGACCCAGCTAC
TGTTGACATGCAAAGAATACGGACTGCAGGGGGTCGAGCTGCAGGAATAT
GCGCGTGCCTTGGGCATGGAGGTGCCTGACTTGACCAAAACCTCTGACGC
GGAGCTGGAGAACTTAGGAAGAGAGATGGCGGCACAACACCTGCTTGAAA
ATGTCGCAAAATCCATGGGGAAGGACCTGGGAAAAGAGGGCTTGGTGCGA
TTTCGGGACACGTTCGGGGACGCCGCCCTGCGTCGTATCGGTGTGGAGCC
GTCCCCTGAGGTGTACACCGCCTTCGGAGACTTTGCCACAGAAGCGTCGC
GCTTCATCACTTTATCAAGACAAGCAATGGAGGCTCAAGGAATTCTAGAA
CCCGGAGCGACTGAGGCGTACAAGAATGCGACAGCTATCGCCGACAGATT
GGCATCTACGTTTGAAGGGGTGAATGTGACGGACGTGCTCGTCACGGCGA
CAGGGCTGATGATGGATGCGGAGCCCTATCTGACGAATTCGATTGACAAC
CCCGTGGACGACGCTACCCGACAAAAGATGAAAGAGCCTTGGCAAATAAT
CCTGAAACTAAGCCAATTTGAGAAAGCCGCGCAGCAGCAGCGCAAAAGCT
TTACCATGAGTCTGAAAGAAGACAATGTACTTGATGGAATCCTCTTGCTG
CATGAAGCCAGCGGCACCAGTGTGGAAAGCCCACTAATGCAACAGCTGGA
TTTTGGGAGAATCGCCGAGATTACAGAAGATCATATGCTCGACGCGTCCG
AATTGAGATTCCTTGTCCAGAGAGTGGGCGCCTTAAATGAAATTTACGAT
GTAGACGATTTCGCAGAGTTGATGGCCGAGGTTGAAGATAACTACCGTAT
GGTGCACGGGCTGCCACCAGTCAGAGAGGAACGGCCGTCTCTTTCGGAAT
AGATGCTGGAGAGCAAGGGATATACCCCCGAGGAAATTTATGCGGTGCAA
GGGGTGGTGGCGGTATTGGTTAATGCCGGTGTTCTAACGGTCCATGCCGA
GAAACTTGAGGCTGCCGACCTGTCCGAGCTGACCACGGCCACAAGCACCA
CGGGAACTCCTAAGCGCCGGCTTCAAAGCAACGTCGGTTGCTGCCCCTGT
AGCCCGGATCGCCACACAAATCCTCCAAACTTGGTTCACACGAAAGACGA
GGAAATCAAGCACGTCGCTTTTAACTTGACTGACGACGGCGCTAGCCCGC
CTGCCCACCCCATGAACGCGGCTCCCACGCCGGACAGGACAGACCCCAGG
GCTTGCGAACGGACGCTGTTGGGTTGTGAAAAGAAAAGCGTGCAACTAGC
GGCGGATCGGCGTTCGATGTATAAGTCTATGAAAGCCATGGGGCAGGCTC
TCCGACGCACTGCAGCTGCTCGTTCCTATTACTTGTTCGTCAAGGACGAA
GTTCACAGTTTTGAAGACTTTGAGGCGTTGAGCAAGTCGGAGCAGGAGGC
GACACGACAAGAACTGGCGACCCAGCTACTGTTGACATGCAAAGAATACG
GACTGCAGGGGGTCGAGCTGCAGGAATATGCGCGTGCCTTGGGCATGGAG
GTGCCTGACTTGACCAAAACCTCTGACGCGGAGCTGGAGAACTTAGGAAG
AGAGATGGCGGCACAACACCTGCTTGAAAATGTCGCAAAATCCATGGGGA
AGGACCTGGGAAAAGAGGGCTTGGTGCGATTTCGGGACACGTTCGGGGAC
GCCGCCCTGCGTCGTATCGGTGTGGAGCCGTCCCCTGAGGTGTACACCGC
CTTCGGAGACTTTGCCACAGAAGCGTCGCGCTTCATCACTTTATCAAGAC
AAGCAATGGAGGCTCAAGGAATTCTAGAACCCGGAGCGACTGAGGCGTAC
AAGAATGCGACAGCTATCGCCGACAGATTGGCATCTACGTTTGAAGGGGT
GAATGTGACGGACGTGCTCGTCACGGCGACAGGGCTGATGATGGATGCGG
AGCCCTATCTGACGAATTCGATTGACAACCCCGTGGACGACGCTACCCGA
CAAAAGATGAAAGAGCCTTGGCAAATAATCCTGAAACTAAGCCAATTTGA
GAAAGCCGCGCAGCAGCAGCGCAAAAGCTTTACCATGAGTCTGAAAGAAG
ACAATGTACTTGATGGAATCCTCTTGCTGCATGAAGCCAGCGGCACCAGT
GTGGAAAGCCCACTAATGCAACAGCTGGATTTTGGGAGAATCGCCGAGAT
TACAGAAG back to top
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