rna2117, rna2117 (mRNA) Nannochloropsis gaditana

Overview
Namerna2117
Unique Namerna2117
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1439
Alignment locationCM002458.1:923435..925202 -

Link to JBrowse

Properties
Property NameValue
ProductGrpE nucleotide exchange factor
Orig transcript idgnl|cribi|Naga_100009g43.623.mrna
Orig protein idgnl|cribi|Naga_100009g43.623
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:923435..925202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g43gene2022Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28580.1cds2109Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2117rna2117-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2117 ID=rna2117|Name=rna2117|organism=Nannochloropsis gaditana|type=mRNA|length=1439bp
AGCTTGTTTCGAGAAAGCCCTGCGAGGCGCACGCACTTGATGTTATAACC
AAGGATAATAGGGAGATCTTCGCTTGATTGACTTCCCTGACTTGCCAACT
CTTCCACATTTACGTGCATTTTTTGACAGATTTAGAGTTTTGCTCCATAA
TGCGTCGGATTCCGAAAGCCGCAACAGCAGTATCGTGCTGCCTAGTAGCC
CTGTGGTCCTACCCGACCATGGCTTGGACTTATCTTGCACCGCGCTCTAC
AATCGGTTCCAGCTGTGCTTCCAAAGATGCCATGTGCAGAGCCTTCTCCC
AGGGGACAGTGGTATCGGCCAGCAGCAGTCATTTGATCGATTCAAGCTCA
TTCAGGATGCGGGCAACCGCATCATCCCCGTTAGGGACGACAGTCCGCTC
GACGATCAATCAAAAAAGCGAACAATGTAAGTATGCCTGCACTTCGTTAT
GTAATTGTGCTACGCGGAAACGCGCGGTATTGCGTCCAAGTCGTCGGACG
CGGCTGTGGGCAACAGCACAGGATGCGGAGGAAGAGGGCTCGGAGGAGGG
GAAGAAGCGAGGGGACGAGACTGAAGACATGGATGTGGCCGCCGAGGAAG
GAGAAGGAGTGGAAGCCACTGAACAAAGTGAGGAGGAGGAGGCCGAAGAG
CTCTCCCCGGAGGACCAAGCTAAGGCCGCTTTGCGGGCGGAGTTGAAGGA
GTTGGAGAAGGAGTTAGCCAAGAAGCGGAATGAGCTGACAGAGGCCCAAG
ACCGGCTTAAAACTGTGGGGAAAGAGGGTTTTATGCGTCTTGCGGCCGAG
GTTGAGACATACAAACGCCGACGAGCGGACGGATTGACCTACGTGCGGGA
GGAAGCTGCGCAAGAAACCATGAAGCAACTGCTGCCGGTCTTCGACCTGA
TGGAGGAGCTGGAGGAGAGGTATGCGGACGTTTCCAGCGAGGCCTCTTTG
AAGGTGCTGAATGGGTACAAGAACCTCCTGCAGGTCTTTGTGGGCAAGGC
TGAGAGGCTGGGTGTCAAGGTCTTGGAGATCGCGGCAGGTGATGCATATG
ACGAGGAGAGCATGGAGGTGGGGGAGGTTGTGGTCGGGGAGGCGGACGGG
GTGGTCGTGGAAGTGGAGCAGAAAGGGTATCAGATCGGAGAGCGGGTGGC
GCGACGGGCCAGGGTGAAGGTGAGTGCCACGGAGGCCACGCTACAGAAGG
CGAAGGAGGAGGAGAAGGAGGAAGAGGGAGACAGCGAGGCGAAGGAGGAC
TCTGGCCAGGAGTAGGGGGCAGCGGACGGCTTGAGCCTTGCGTGGCGAGG
AGGAGAGGCGTGAGGCGATATCAAAGAGGGAGGCATGAGGAAATATGATG
AGAGAGGAGCGGGGAGTATCGCGCTTGTTGCTTATGGTCAGGGCATCCAA
GACTCCGGTAGAAATGAATAACCGCTTTTAAGCTTGCCA
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protein sequence of rna2117

>rna2117-protein ID=rna2117-protein|Name=rna2117|organism=Nannochloropsis gaditana|type=polypeptide|length=339bp
MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFS
QGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSL
CNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEE
GEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQ
DRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDL
MEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIGKLRDG
RRGGREGGREGGREGGRTHDVSFLAAFGLSWATKKETYI
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mRNA from alignment at CM002458.1:923435..925202-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2117 ID=rna2117|Name=rna2117|organism=Nannochloropsis gaditana|type=mRNA|length=1768bp|location=Sequence derived from alignment at CM002458.1:923435..925202- (Nannochloropsis gaditana)
AGCTTGTTTCGAGAAAGCCCTGCGAGGCGCACGCACTTGATGTTATAACC
AAGGATAATAGGGAGATCTTCGCTTGATTGACTTCCCTGACTTGCCAACT
CTTCCACATTTACGTGCATTTTTTGACAGATTTAGAGTTTTGCTCCATAA
TGCGTCGGATTCCGAAAGCCGCAACAGCAGTATCGTGCTGCCTAGTAGCC
CTGTGGTCCTACCCGACCATGGCTTGGACTTATCTTGCACCGCGCTCTAC
AATCGGTTCCAGCTGTGCTTCCAAAGATGCCATGTGCAGAGCCTTCTCCC
AGGGGACAGTGGTATCGGCCAGCAGCAGTCATTTGATCGATTCAAGCTCA
TTCAGGATGCGGGCAACCGCATCATCCCCGTTAGGGACGACAGTCCGCTC
GACGATCAATCAAAAAAGCGAACAATGTAAGTATGCCTGCACTTCGTTAT
GTAATTGTGCTACGCGGAAACGCGCGGTATTGCGTCCAAGTCGTCGGACG
CGGCTGTGGGCAACAGCACAGGATGCGGAGGAAGAGGGCTCGGAGGAGGG
GAAGAAGCGAGGGGACGAGACTGAAGACATGGATGTGGCCGCCGAGGAAG
GAGAAGGAGTGGAAGCCACTGAACAAAGTGAGGAGGAGGAGGCCGAAGAG
CTCTCCCCGGAGGACCAAGCTAAGGCCGCTTTGCGGGCGGAGTTGAAGGA
GTTGGAGAAGGAGTTAGCCAAGAAGCGGAATGAGCTGACAGAGGCCCAAG
ACCGGCTTAAAACTGTGGGGAAAGAGGGTTTTATGCGTCTTGCGGCCGAG
GTTGAGACATACAAACGCCGACGAGCGGACGGATTGACCTACGTGCGGGA
GGAAGCTGCGCAAGAAACCATGAAGCAACTGCTGCCGGTCTTCGACCTGA
TGGAGGAGCTGGAGGAGAGGTATGCGGACGTTTCCAGCGAGGCCTCTTTG
AAGGTGCTGAATGGGTACAAGAACCTCCTGCAGGTCTTTGTGGGCAAGGC
TGAGAGGCTGGGTGTCAAGGTCTTGGAGATCGGTAAGCTTCGAGACGGAC
GGCGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGGGAGG
ACGCACGATGTTTCTTTCTTGGCCGCCTTTGGCCTATCTTGGGCGACGAA
AAAGGAAACTTACATTTAAGGACCGATGGGGCAAGGTGTCGATGAGGAAC
AGGATTAATGATGCATGTATTGTCCAAGACTACGGTCATGCGGAAAAGAT
CACCTTGGAGAACTGAGACACCCCCAAAGCGCCCTCTCCTCCTCTACCTC
CCTCCTTTTCTCTCCTCCGCATCCCTTTTAATGTTACCTTCCTTCCTATC
CATCCGTACAGCGGCAGGTGATGCATATGACGAGGAGAGCATGGAGGTGG
GGGAGGTTGTGGTCGGGGAGGCGGACGGGGTGGTCGTGGAAGTGGAGCAG
AAAGGGTATCAGATCGGAGAGCGGGTGGCGCGACGGGCCAGGGTGAAGGT
GAGTGCCACGGAGGCCACGCTACAGAAGGCGAAGGAGGAGGAGAAGGAGG
AAGAGGGAGACAGCGAGGCGAAGGAGGACTCTGGCCAGGAGTAGGGGGCA
GCGGACGGCTTGAGCCTTGCGTGGCGAGGAGGAGAGGCGTGAGGCGATAT
CAAAGAGGGAGGCATGAGGAAATATGATGAGAGAGGAGCGGGGAGTATCG
CGCTTGTTGCTTATGGTCAGGGCATCCAAGACTCCGGTAGAAATGAATAA
CCGCTTTTAAGCTTGCCA
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Coding sequence (CDS) from alignment at CM002458.1:923435..925202-

>rna2117 ID=rna2117|Name=rna2117|organism=Nannochloropsis gaditana|type=CDS|length=1020bp|location=Sequence derived from alignment at CM002458.1:923435..925202- (Nannochloropsis gaditana)
ATGCGTCGGATTCCGAAAGCCGCAACAGCAGTATCGTGCTGCCTAGTAGC
CCTGTGGTCCTACCCGACCATGGCTTGGACTTATCTTGCACCGCGCTCTA
CAATCGGTTCCAGCTGTGCTTCCAAAGATGCCATGTGCAGAGCCTTCTCC
CAGGGGACAGTGGTATCGGCCAGCAGCAGTCATTTGATCGATTCAAGCTC
ATTCAGGATGCGGGCAACCGCATCATCCCCGTTAGGGACGACAGTCCGCT
CGACGATCAATCAAAAAAGCGAACAATGTAAGTATGCCTGCACTTCGTTA
TGTAATTGTGCTACGCGGAAACGCGCGGTATTGCGTCCAAGTCGTCGGAC
GCGGCTGTGGGCAACAGCACAGGATGCGGAGGAAGAGGGCTCGGAGGAGG
GGAAGAAGCGAGGGGACGAGACTGAAGACATGGATGTGGCCGCCGAGGAA
GGAGAAGGAGTGGAAGCCACTGAACAAAGTGAGGAGGAGGAGGCCGAAGA
GCTCTCCCCGGAGGACCAAGCTAAGGCCGCTTTGCGGGCGGAGTTGAAGG
AGTTGGAGAAGGAGTTAGCCAAGAAGCGGAATGAGCTGACAGAGGCCCAA
GACCGGCTTAAAACTGTGGGGAAAGAGGGTTTTATGCGTCTTGCGGCCGA
GGTTGAGACATACAAACGCCGACGAGCGGACGGATTGACCTACGTGCGGG
AGGAAGCTGCGCAAGAAACCATGAAGCAACTGCTGCCGGTCTTCGACCTG
ATGGAGGAGCTGGAGGAGAGGTATGCGGACGTTTCCAGCGAGGCCTCTTT
GAAGGTGCTGAATGGGTACAAGAACCTCCTGCAGGTCTTTGTGGGCAAGG
CTGAGAGGCTGGGTGTCAAGGTCTTGGAGATCGGTAAGCTTCGAGACGGA
CGGCGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGGGAG
GACGCACGATGTTTCTTTCTTGGCCGCCTTTGGCCTATCTTGGGCGACGA
AAAAGGAAACTTACATTTAA
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Synonyms
Publications