EWM28580.1, cds2109 (CDS) Nannochloropsis gaditana

Overview
NameEWM28580.1
Unique Namecds2109
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:924034..925053 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28580.1
ProductGrpE nucleotide exchange factor
Orig transcript idgnl|cribi|Naga_100009g43.623.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:924034..925053 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0051087chaperone binding
GO:0000774adenyl-nucleotide exchange factor activity
GO:0042803protein homodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR013805GrpE_coiled_coil
IPR000740GrpE
Homology
[Close]
BLAST of EWM28580.1 vs. NCBI_GenBank
Match: gi|585110998|gb|EWM28580.1| (GrpE nucleotide exchange factor [Nannochloropsis gaditana])

HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0 
Query:    1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIGKLRDGRRGGREGGREGGREGGRTHDVSFLAAFGLSWATKKETYI 339
            MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIGKLRDGRRGGREGGREGGREGGRTHDVSFLAAFGLSWATKKETYI
Sbjct:    1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIGKLRDGRRGGREGGREGGREGGRTHDVSFLAAFGLSWATKKETYI 339
[Close]
BLAST of EWM28580.1 vs. NCBI_GenBank
Match: gi|585110997|gb|EWM28579.1| (GrpE nucleotide exchange factor [Nannochloropsis gaditana])

HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0 
Query:    1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIG 295
            MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEI 
Sbjct:    1 MRRIPKAATAVSCCLVALWSYPTMAWTYLAPRSTIGSSCASKDAMCRAFSQGTVVSASSSHLIDSSSFRMRATASSPLGTTVRSTINQKSEQCKYACTSLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEIA 295
[Close]
BLAST of EWM28580.1 vs. NCBI_GenBank
Match: gi|553188833|ref|XP_005854875.1| (GrpE, partial [Nannochloropsis gaditana CCMP526] >gi|422294183|gb|EKU21483.1| GrpE, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 340.887 bits (873), Expect = 8.272e-114
Identity = 180/196 (91.84%), Postives = 185/196 (94.39%), Query Frame = 0 
Query:   99 SLCNCATRKRAVLRPSRRTRLWATAQDAEEEGSEEGKKRGDETEDMDVAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVSSEASLKVLNGYKNLLQVFVGKAERLGVKVLEI 294
            S  +  ++KR +    RRTRLWATAQDAEEEGSEEGKKRGDETED  VAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADV+SEASLKVLNGYKNLLQVFVGKAERLGVKVLEI
Sbjct:   30 SPLDDQSKKRTI----RRTRLWATAQDAEEEGSEEGKKRGDETED--VAAEEGEGVEATEQSEEEEAEELSPEDQAKAALRAELKELEKELAKKRNELTEAQDRLKTVGKEGFMRLAAEVETYKRRRADGLTYVREEAAQETMKQLLPVFDLMEELEERYADVTSEASLKVLNGYKNLLQVFVGKAERLGVKVLEI 219
The following BLAST results are available for this feature:
BLAST of EWM28580.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110998|gb|EWM28580.1|0.000e+0100.00GrpE nucleotide exchange factor [Nannochloropsis g... [more]
gi|585110997|gb|EWM28579.1|0.000e+099.66GrpE nucleotide exchange factor [Nannochloropsis g... [more]
gi|553188833|ref|XP_005854875.1|8.272e-11491.84GrpE, partial [Nannochloropsis gaditana CCMP526] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2117rna2117Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications