rna2107, rna2107 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2107
Unique Name	rna2107
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3448
Alignment location	CM002458.1:901978..903614 +

Link to JBrowse

Properties


Property Name	Value
Product	phox domain-containing
Orig transcript id	gnl\|cribi\|Naga_100009g53.606.mrna
Orig protein id	gnl\|cribi\|Naga_100009g53.606
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:901978..903614 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g53	gene2014	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2107	rna2107-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28563.1	cds2099	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:901978..903614+
coding sequence from alignment at CM002458.1:901978..903614+

mRNA sequence

>rna2107 ID=rna2107|Name=rna2107|organism=Nannochloropsis gaditana|type=mRNA|length=3448bp
TTATACATTGAAGCAGGGACACGGCTGGCTCCCTTCAGTGATGAGCGGTC
AGCGGGCCGACGGGAGGCATGAGGAGGTAGAGGAAGGAGGAGTGGAAGCG
GAAGGAGTGCGCGACAGGTCCAACGATAACGATATGGAGCAAACAGGCCC
TACTCAAGTGTTGGAAAGTGTACGCAGCGGTGCTGGAAGCGGGATTGGGG
GTCCTGGACAGGGGGAACGGAATCACGGGCTGGATCCAAGAGAGCTGGCG
CCGTTTCTGAACGCCCTGGACCAATATCATCCTACGATCCCAGAAGAGGT
CACAGCCTATTTTTTGCAACAAGGAGGAGTGACAGTCACGGATTCAAAAA
TCAAAAAGCTTGTCTCGCTGGCAGCCGAGAAACTTGTGTCGGAGATAGTG
CACGACACAACTACCTACAGTCGCATGAAGGACCAAGATGGAGATATACT
CAAGATGGAGGACTTGAAAGAGAGTTTGGGTAAATACGGAGTAGAGAAAT
TTAAGATCAGAGCAACCGAAGAGGAGAAGAAGGAGGAAGAGGGAGGTAAA
GGCGGTGGTGGGGAGGTTGCTTTTGGAGGAGAAAAAAGTCTTGGCAGTGG
AAGGGAAGGACGAGGTGGAGGCGGAGGTCGTCGGGCACCATCCAGAAACT
CATAAAAATAGAAGCTGAACAAGGCTTATGTCTATGAGGCAAAAGTAATC
ACGAAAAAAAATTAACGCCTCGCTGTGAGCGGTACAGGCTGGAATCAGTT
GGCCGACACCCCGCCTTCAAATTCTTTTGAGAGCTAGGCAACATGATCAT
TAACAAATGAATGTAGACAGTCGTGCATGTTTTCGGTCTCACCCTTTGCG
TGTAGATGTGGTGACCGGCTTGTAAAGGGGAAATTGGGACCATAGAAGTG
GTATCGACGTACACTGTGTCGTTCCTCTCGCGAAAGGGCCATATCAGAAG
GAATACCTCATCGAGCATTTTACCATGGCTTGTCGACATTCAGAGAAAGG
ACCTAAATTTTGATATCTCCCTATTGAAGGCATCCCATGGCCGCCCTGGC
TTCAGGAAAAAAGCCAGTATTAGGTGCTGCACCTCCGAACACTGCTAGCG
CCCGCACAGCCCCCTCCACCCTGGAGGACAGCGCTATTCCTCTTTCTAAA
CTTCGCAGTCAAGGCCGCAAAGAGCTCCTCGACGTGCTGCAAGCGGCGAG
AGGTCGGAAGGCGTTGGTGCTGGATACAGCGTTGCGTGGATTACTGGCTC
ACATTGTCCCTGAAGGAACTAACTTCCTGCGGCAGCACGGGGTCGTACAC
TTATGCCGAGGACTGCAGACTGACCTTACTTTTGTGACCCCAGAGGGCAG
AGACGACGAGCCTGACAATATTTTGTACTTTGTACGGCCTTCATTGAGTA
ACATGCGTATGTTGTCGGCGCAGCTCAAAAAGCGGAATGGCAAGCGTCAG
AAGGGTGGGGGACGGAAGGCCTTAACCAGAAGTGCAAGCGAGAGTGGGTC
GGGCGGAGGTCCGTATCAGCCAAAGGAAGGCCGGCACCTCCTGTACTTCG
TCCCGCACAAAACGTTTCTGTGTGAGCAGGCCTTGTCGGATGAAGGAGTT
TTGGAATGCTTCGCGGAGGTAGGGGAGTGTCATCTAGATCTCTTTCCTCT
CGACACCGACCTTGTCTCCCTGGAAATGGATACGTCGTTCAAAGACGCCT
ACGTGGACGGTGACTCTACCATGCTTACTACCGTCGCACGATCTCTTCAA
AAGCTCGAGAAAAATTTCGGTGTGATCCCCCACGTCAAGGCAAAAGGCAC
CTACGCCGCGGTTGCACTGCAACGGTTCTTTAATCTGAAGAGACAGCAAG
AAGAAGAGAAGCGAGGAGACGAGTTTGCGACGACTCCGACCCCGTCTTCC
TCCCACAGGGGTACAAGCGCGCCCGAGATCGACACCTTGGTCTTGCTGGA
CCGGGCCGTGGACCTGGTGACGCCGCTCTTGACCCCGCTCACCTACGAGG
GCCTTTTGAACGAATGCTTGGGGATCCAGCACGGAGCCATCAAAGTAGAC
CCGAGCCTGGTAGGGGACACGGATGACACAGGCGGTGGGAGGGGAAGGGT
GATAGGGCGCGGGACAACGCCCGAAAATACGGCCGGGGGCGCAGGAAAGG
AAGGAAAGGGGGAGCCCGTGACCGTTGCCTTGAACAGCAATGATTCGCTC
TACGCGGAGATCCGAGACTTGCATTTGGAGGTTCTGGGGCTTCAGTTGAA
TGAGAAGGCGATGGAGATGCGACAGACATACGCACGCGTGAAGGAGGAAA
CGCGGGACGGCTCCCTGAACGAGATCCACGACGTGGTCAAGTCCATACCG
GCCTTGCAGCAGAAGTACAAGGGCCTGAACCTACACATCAATATCGCGGA
GTTTCTGAAACCCACTACCGGACACGTGCGCTTTCAGCAACGCTGGCAAT
TGGAGCGGAGCATGCTGGAAGGCGAGACCTGCTACGAGGACGTGGAGGAG
ATGGTGGCCGCGTACGAGCCCGTCGACCAGGTCCTGCGCCTCCTCGCTTT
GCAATCCCTGACTGCGGGAGGGATCAAGGCCTCCAAGTACGAATTGCTGA
AGCGAGAGATCATCCAATCCTACGGATACGAATATTTGTTCGCATTGACC
AACATGGAACAGGCAGGGCTGCTCCGCAAGGCGGACCTCCAACTCTCAAA
TGTCATGTTTGGCAGCATTGGTGCCAGCGGCTTCTCGTCCACAGGGGGCT
CAGGCAATGCGTGGGCGAGCCTGCGACGTCTGCTCCGGCTTGTCAAGGAG
AACGTAAACACGCAGGTCCCGGACGACATCGCTTACGTCTCTTCGGGCTA
CGCGCCGCTCTCGGTCCGCTTACTTCAGCTTATTCAAAAGCCGGGCTGGG
CATCTTGCTCGGACGTTTTCAAGTTCTTACCGGGCCCTACTCTAGAATGT
ACACAGACCCAGGAAAACACGAGGAGGGGAGGTGCGCCGCTCTCGTTCAT
GCAAGAACTGGATAGGCTTCTAGGCACTGCGTGCAGCGGGACTGACGGAG
ACATCGGGGGGAGGCCTCAGCCATCCGTGACGCCAGTGACACAACATCTT
GGCCTTTCAGCTGCCGAGACTGGGGGGAAAATTTTGCCAAACGGGAAGAC
TGTCATGATGGTGTACTTTATCGGCGGGGTCTCTTTTATGGAGATTGCAG
CGATGCGGTATTTATCCCGGCATAAGGACTTTCCGTACTCTATTATCGTC
TGCACAACTAAGCTTATAAGTGGAAATCTTTTTATAGAATCAGTTTTCGA
GAACTTCAGAAACTCCCTTGGAAGATCGTAGCGTACGTTGCATTAGTCGT
GGCGCTTGGGAAGCTAAAAGGGCTGGGGCTTTGAGCGAGTGGCGTACATC
GTGGCCTCACATAGACGTGTAAAGCAATTGAAGCTAACGATAAGGACG

protein sequence of rna2107

>rna2107-protein ID=rna2107-protein|Name=rna2107|organism=Nannochloropsis gaditana|type=polypeptide|length=454bp
MSSSSRTPSPHPPLGEPRQHNESKEKVKSTLSHVRLTADAKSHVLSLPAL
STAPSPVGGKDIEGGPMHGTTPDGMLHSVGGYGWYEEDNVSPANSGDEHG
EEDGGGGDIKHVRVLSRMETLRVDVLDASMPGGTGHGGLQIDEAGGVTDE
CERLLPRVPICRHDSVNEEGSLGRSKSTRMDADTTTMSYSHAADGTRRQH
WHRQREGEILFHLPQSNFSVMTRQFLEEAAALSGTVGGGPPGRATHCFHH
RHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLC
INQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWW
RCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFASPSPSTTICDGLWS
CPCVREMDDQGTWGANGITHISSNEEMLLCQKVQEAGQFRGIESGCDTVA
REEK

mRNA from alignment at CM002458.1:901978..903614+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2107 ID=rna2107|Name=rna2107|organism=Nannochloropsis gaditana|type=mRNA|length=1637bp|location=Sequence derived from alignment at CM002458.1:901978..903614+ (Nannochloropsis gaditana)
ATCCCAAACAACACCATaaagggtggaaggagggcacgcGGTGCAGTCTT
GTCGGGCGCGGAGGCTGAGGGCGCAGGCGACCATTCCGAGTGCAAGGTGG
CCGGAATGTCATCGTCTTCTCGCACACCATCCCCCCATCCGCCACTGGGA
GAACCCAGACAACACAATGAATCAAAGGAAAAAGTAAAATCAACACTTTC
GCACGTGCGGTTGACTGCAGACGCAAAGAGCCAtgtgctctccctccctg
ctttgtCCACGGCACCATCTCCAGTAGGCGGCAAGGACATAGAGGGAGGA
CCTATGCATGGCACCACACCGGATGGGATGCTCCATTCGGTCGGGGGCTA
CGGCTGGTACGAGGAGGATAATGTAAGCCCAGCGAATAGTGGAGATGAGc
acggagaagaggatggtggcggcggtgacATCAAGCATGTACGAGTCCTC
TCTCGGATGGAGACACTGCGGGTGGACGTGTTAGATGCCTCGATGCCCGG
CGGAACCGGTCACGGGGGGCTTCAAATTGATGAAGCTGGAGGCGTGACAG
ATGAATGTGAGCGTCTTCTCCCACGGGTGCCTATCTGTCGTCATGACAGC
GTGAACGAGGAGGGCAGCCTGGGCCGCAGTAAGAGCACTAGAATGGACGC
AGACACTACCACGATGAGCTACAGTCACGCAGCAGACGGCACCAGACGCC
AACACTGGCATCGGCAGCGAGAAGGTGAAATTCTGTTTCACCTGCCACAG
AGCAACTTCTCAGTGATGACGCGGCAAtttctggaggaggctgctgCCCT
CTCCGGCACCGTGGGTGGAGGACCCCCTGGCCGGGCGACGCACTGTTttc
accaccgccacccccGTGTTCTCCAGCTCCATAGTCACCGCTCACATTCA
AAGCGGCAGCCGGAAGTTGTGTACGCAGCCCTGGGCCTGGGGGGCTTTCG
CATCTGCCAAACCGGATGGGGCAGCCAGCATGCCGAGTACTTAGTCTGCC
TCTGCATTAATCAGCAGACATTCATTGCATGGCGGCGATACTCCGCCTTT
GCGAAGTTCTTCAGGGACATCCAGCGCTTATACCGGGATGCGGCTGACAT
GTTTCCAGTCACACGAGGCGCATGGAAAGCGCTGGAAAGGAGACGGAAGT
GGTGGCGATGTTTGAGTGTGGGTTACTTGGCGTTCAAGCTCGGCCTCCTT
GAGTCCTTTCTGGAGGCTGTCTTGGTCGAGGTCCCTGGACCTGACCTCTT
GATGGCATTCGCTTCGCCAAGTCCCTCGACAACAATTTGCGATGGGCTTT
GGTCTTGTCCGTGCGtgagggagatggacgaTCAAGGCACCTGGGGGGCT
AATGGTATCACTCACATTTCTAGTAACGAGGAAATGTTGCTCTGTCAGAA
AGTGCAGGAAGCTGGACAGTTTCGAGGGATTGAATCTGGTTGTGACACAG
TCGCTAGGGAAGAAAAGTAATTTTTGAAACAGTAAGAGAGAGATGATGGT
TTGAAACCCACATCTTTGAACTGCTAGGGTCACGCAAGTGAAATCCACTT
GTGCTTGATTGTAATGAGGACATGTTACATGCACATTTTAAGACACGGCC
GGCTCTATACATGCAAATAATAATTGTAGGTCTTGAT

Coding sequence (CDS) from alignment at CM002458.1:901978..903614+

>rna2107 ID=rna2107|Name=rna2107|organism=Nannochloropsis gaditana|type=CDS|length=1365bp|location=Sequence derived from alignment at CM002458.1:901978..903614+ (Nannochloropsis gaditana)
ATGTCATCGTCTTCTCGCACACCATCCCCCCATCCGCCACTGGGAGAACC
CAGACAACACAATGAATCAAAGGAAAAAGTAAAATCAACACTTTCGCACG
TGCGGTTGACTGCAGACGCAAAGAGCCAtgtgctctccctccctgctttg
tCCACGGCACCATCTCCAGTAGGCGGCAAGGACATAGAGGGAGGACCTAT
GCATGGCACCACACCGGATGGGATGCTCCATTCGGTCGGGGGCTACGGCT
GGTACGAGGAGGATAATGTAAGCCCAGCGAATAGTGGAGATGAGcacgga
gaagaggatggtggcggcggtgacATCAAGCATGTACGAGTCCTCTCTCG
GATGGAGACACTGCGGGTGGACGTGTTAGATGCCTCGATGCCCGGCGGAA
CCGGTCACGGGGGGCTTCAAATTGATGAAGCTGGAGGCGTGACAGATGAA
TGTGAGCGTCTTCTCCCACGGGTGCCTATCTGTCGTCATGACAGCGTGAA
CGAGGAGGGCAGCCTGGGCCGCAGTAAGAGCACTAGAATGGACGCAGACA
CTACCACGATGAGCTACAGTCACGCAGCAGACGGCACCAGACGCCAACAC
TGGCATCGGCAGCGAGAAGGTGAAATTCTGTTTCACCTGCCACAGAGCAA
CTTCTCAGTGATGACGCGGCAAtttctggaggaggctgctgCCCTCTCCG
GCACCGTGGGTGGAGGACCCCCTGGCCGGGCGACGCACTGTTttcaccac
cgccacccccGTGTTCTCCAGCTCCATAGTCACCGCTCACATTCAAAGCG
GCAGCCGGAAGTTGTGTACGCAGCCCTGGGCCTGGGGGGCTTTCGCATCT
GCCAAACCGGATGGGGCAGCCAGCATGCCGAGTACTTAGTCTGCCTCTGC
ATTAATCAGCAGACATTCATTGCATGGCGGCGATACTCCGCCTTTGCGAA
GTTCTTCAGGGACATCCAGCGCTTATACCGGGATGCGGCTGACATGTTTC
CAGTCACACGAGGCGCATGGAAAGCGCTGGAAAGGAGACGGAAGTGGTGG
CGATGTTTGAGTGTGGGTTACTTGGCGTTCAAGCTCGGCCTCCTTGAGTC
CTTTCTGGAGGCTGTCTTGGTCGAGGTCCCTGGACCTGACCTCTTGATGG
CATTCGCTTCGCCAAGTCCCTCGACAACAATTTGCGATGGGCTTTGGTCT
TGTCCGTGCGtgagggagatggacgaTCAAGGCACCTGGGGGGCTAATGG
TATCACTCACATTTCTAGTAACGAGGAAATGTTGCTCTGTCAGAAAGTGC
AGGAAGCTGGACAGTTTCGAGGGATTGAATCTGGTTGTGACACAGTCGCT
AGGGAAGAAAAGTAA

Synonyms

Publications