EWM28563.1, cds2099 (CDS) Nannochloropsis gaditana

Overview
NameEWM28563.1
Unique Namecds2099
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:902083..903447 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28563.1
Productphox domain-containing
Orig transcript idgnl|cribi|Naga_100009g53.606.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:902083..903447 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR001683Phox
Homology
BLAST of EWM28563.1 vs. NCBI_GenBank
Match: gi|585110981|gb|EWM28563.1| (phox domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 939.873 bits (2428), Expect = 0.000e+0
Identity = 454/454 (100.00%), Postives = 454/454 (100.00%), Query Frame = 0
Query:    1 MSSSSRTPSPHPPLGEPRQHNESKEKVKSTLSHVRLTADAKSHVLSLPALSTAPSPVGGKDIEGGPMHGTTPDGMLHSVGGYGWYEEDNVSPANSGDEHGEEDGGGGDIKHVRVLSRMETLRVDVLDASMPGGTGHGGLQIDEAGGVTDECERLLPRVPICRHDSVNEEGSLGRSKSTRMDADTTTMSYSHAADGTRRQHWHRQREGEILFHLPQSNFSVMTRQFLEEAAALSGTVGGGPPGRATHCFHHRHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFASPSPSTTICDGLWSCPCVREMDDQGTWGANGITHISSNEEMLLCQKVQEAGQFRGIESGCDTVAREEK 454
            MSSSSRTPSPHPPLGEPRQHNESKEKVKSTLSHVRLTADAKSHVLSLPALSTAPSPVGGKDIEGGPMHGTTPDGMLHSVGGYGWYEEDNVSPANSGDEHGEEDGGGGDIKHVRVLSRMETLRVDVLDASMPGGTGHGGLQIDEAGGVTDECERLLPRVPICRHDSVNEEGSLGRSKSTRMDADTTTMSYSHAADGTRRQHWHRQREGEILFHLPQSNFSVMTRQFLEEAAALSGTVGGGPPGRATHCFHHRHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFASPSPSTTICDGLWSCPCVREMDDQGTWGANGITHISSNEEMLLCQKVQEAGQFRGIESGCDTVAREEK
Sbjct:    1 MSSSSRTPSPHPPLGEPRQHNESKEKVKSTLSHVRLTADAKSHVLSLPALSTAPSPVGGKDIEGGPMHGTTPDGMLHSVGGYGWYEEDNVSPANSGDEHGEEDGGGGDIKHVRVLSRMETLRVDVLDASMPGGTGHGGLQIDEAGGVTDECERLLPRVPICRHDSVNEEGSLGRSKSTRMDADTTTMSYSHAADGTRRQHWHRQREGEILFHLPQSNFSVMTRQFLEEAAALSGTVGGGPPGRATHCFHHRHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFASPSPSTTICDGLWSCPCVREMDDQGTWGANGITHISSNEEMLLCQKVQEAGQFRGIESGCDTVAREEK 454          
BLAST of EWM28563.1 vs. NCBI_GenBank
Match: gi|553184363|ref|XP_005854074.1| (hypothetical protein NGA_2005800, partial [Nannochloropsis gaditana CCMP526] >gi|422294986|gb|EKU22285.1| hypothetical protein NGA_2005800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 930.243 bits (2403), Expect = 0.000e+0
Identity = 448/454 (98.68%), Postives = 450/454 (99.12%), Query Frame = 0
Query:    1 MSSSSRTPSPHPPLGEPRQHNESKEKVKSTLSHVRLTADAKSHVLSLPALSTAPSPVGGKDIEGGPMHGTTPDGMLHSVGGYGWYEEDNVSPANSGDEHGEEDGGGGDIKHVRVLSRMETLRVDVLDASMPGGTGHGGLQIDEAGGVTDECERLLPRVPICRHDSVNEEGSLGRSKSTRMDADTTTMSYSHAADGTRRQHWHRQREGEILFHLPQSNFSVMTRQFLEEAAALSGTVGGGPPGRATHCFHHRHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFASPSPSTTICDGLWSCPCVREMDDQGTWGANGITHISSNEEMLLCQKVQEAGQFRGIESGCDTVAREEK 454
            MSSSSRTPSPHPPLGEPRQHNE KEKVKSTLSHVRLTADAKSHVLSLPALSTAPSPVGGKDIEGGPMHGTTPDGM HSVGGYGWYEEDNVSPANSGDEHGEEDGGGGDIKHVRVLSRMETLRVDVLDASMPGGTGHGGLQIDEAGGVTDECERLLPRVPICRHDSVNEEGSLGRSKSTRMDADTTTMSYSHAADGTRRQHWHRQREGEILFHLPQSNFSVMTRQFLEEAAALSGTVGGGPPGRATHCFHHRHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQR+YR+AADMFP TRGAWKALER RKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFASPSPSTTICDGLWSCPCVREMDDQGTWGANGITHISSNEEMLLCQKVQEAGQFRGIESGCDTVAREEK
Sbjct:   30 MSSSSRTPSPHPPLGEPRQHNEPKEKVKSTLSHVRLTADAKSHVLSLPALSTAPSPVGGKDIEGGPMHGTTPDGMFHSVGGYGWYEEDNVSPANSGDEHGEEDGGGGDIKHVRVLSRMETLRVDVLDASMPGGTGHGGLQIDEAGGVTDECERLLPRVPICRHDSVNEEGSLGRSKSTRMDADTTTMSYSHAADGTRRQHWHRQREGEILFHLPQSNFSVMTRQFLEEAAALSGTVGGGPPGRATHCFHHRHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRVYRNAADMFPATRGAWKALERGRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFASPSPSTTICDGLWSCPCVREMDDQGTWGANGITHISSNEEMLLCQKVQEAGQFRGIESGCDTVAREEK 483          
BLAST of EWM28563.1 vs. NCBI_GenBank
Match: gi|224013630|ref|XP_002296479.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968831|gb|EED87175.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.8702 bits (185), Expect = 2.075e-11
Identity = 35/131 (26.72%), Postives = 65/131 (49.62%), Query Frame = 0
Query:  274 AALGLGGFRICQTGWGSQHAEYLVCLCIN--QQTFIAWRRYSAFAKFFRDIQRLY----------------RDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFA 386
             ++ +  +R+ ++    ++A++LV  C    + T   W+RYS F++  R +   +                 D  ++ P    +W+ L++R++W+RCL  GYL+ K+ LLE FL  +L E   P +L  F 
Sbjct:  231 VSISIASYRVVESKKHGKYAQFLVIFCDGNFRNTIGVWKRYSDFSELSRKVTHGHSESCAAQLNPLSVTDDNDNVEILPNAITSWRLLKKRQRWYRCLDTGYLSLKVFLLERFLHDILFESSNPQILRDFV 361          
BLAST of EWM28563.1 vs. NCBI_GenBank
Match: gi|298705064|emb|CBJ28523.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.485 bits (184), Expect = 2.075e-11
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 0
Query:  244 ATHCFHHRHPRVLQLHSHRSHSKRQPEVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAFA 386
            AT  F   + +V    + R    +QPE    A+ +G  R+ +    + HAEY V +    Q   +W+RYS F K   +  ++  D  D    T  AW  +++ ++W+RCL   YL  K  LLE FL   L EVP P LLM F 
Sbjct:  169 ATVEFVVPNAQVTTTKTFRQGMGQQPEPY--AVSIGSTRVRRLSPFAVHAEYQVLVSTKDQVHKSWKRYSDF-KLLAEYAKI-SDLRD----TVKAWAHIQQTQRWFRCLEANYLKTKCSLLERFLAQFLFEVPTPSLLMNFV 303          
BLAST of EWM28563.1 vs. NCBI_GenBank
Match: gi|698798336|ref|XP_009832197.1| (hypothetical protein H257_08109 [Aphanomyces astaci] >gi|574113124|gb|ETV78615.1| hypothetical protein H257_08109 [Aphanomyces astaci])

HSP 1 Score: 73.9442 bits (180), Expect = 8.954e-11
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 0
Query:  270 EVVYAALGLGGFRICQTGWGS-QHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAF 385
            +V  AA+ +  FRI Q+  G+ +HAEYLV   + ++    WRRYS FA+  + ++ +YR     FP    AW+ ++ R  W+  L   YL  K   LE FL  ++ E+  PD+L+ F
Sbjct:  179 KVQTAAVSIPKFRIVQSRAGADRHAEYLVTFKLGREFHADWRRYSEFAEIIKKVE-VYR-----FPRAMAAWRNIDNR--WFNRLEPSYLHNKCIALEVFLRDLMYELTVPDVLIDF 287          
BLAST of EWM28563.1 vs. NCBI_GenBank
Match: gi|673025672|ref|XP_008866797.1| (hypothetical protein H310_04291 [Aphanomyces invadans] >gi|574478363|gb|ETW05359.1| hypothetical protein H310_04291 [Aphanomyces invadans])

HSP 1 Score: 73.559 bits (179), Expect = 1.206e-10
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 0
Query:  270 EVVYAALGLGGFRICQTGWGS-QHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAF 385
            +V  AA+ +  FRI Q+  GS +HAEYLV   + ++    WRRYS FA+  + +  +YR     FP    AW+ ++ R  W+  L   YL  K   LE FL  ++ E+  PD+L+ F
Sbjct:  177 KVQTAAVSIPKFRIVQSRAGSDRHAEYLVTFKLGREFHADWRRYSEFAEIVKKVD-VYR-----FPRAMAAWRKIDNR--WFNRLEPSYLHNKCIALEVFLRDLMYELTVPDVLIDF 285          
BLAST of EWM28563.1 vs. NCBI_GenBank
Match: gi|397563279|gb|EJK43738.1| (hypothetical protein THAOC_37788 [Thalassiosira oceanica])

HSP 1 Score: 73.559 bits (179), Expect = 2.771e-10
Identity = 35/120 (29.17%), Postives = 62/120 (51.67%), Query Frame = 0
Query:  283 ICQTGWGSQHAEYLVCLCIN--QQTFIAWRRYSAFAKFFRDIQRLYRDA---------------ADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAF 385
            + Q+    ++A+YLV  C    + T   W+RYS F++  R + + + ++                ++ P    +W+ L++R++W+RCL  GYL+ K+ LLE FL  +L E   P +L  F
Sbjct:  493 LSQSKKHGKYAQYLVIFCDGNFRNTVGVWKRYSDFSQLSRKVTQGHHESCAAAINPLNVTEDRDVEILPNAITSWRLLKKRQRWYRCLDAGYLSLKVFLLERFLHDILFESSNPQILRDF 612          
BLAST of EWM28563.1 vs. NCBI_GenBank
Match: gi|298712413|emb|CBJ33192.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.633 bits (174), Expect = 5.509e-10
Identity = 39/116 (33.62%), Postives = 58/116 (50.00%), Query Frame = 0
Query:  270 EVVYAALGLGGFRICQTGWGSQHAEYLVCLCINQQTFIAWRRYSAFAKFFRDIQRLYRDAADMFPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAF 385
            ++    + +  F+I QTG    HAEYL+ + +   T   WRR+S F +    + R  R   D F     +W+ L  R++W+RCL V YL  K  LLE FL   + E   P+ +  F
Sbjct:  250 QITSIMVHIPKFQIIQTG-SDVHAEYLIVVGLGTVTLGVWRRFSEFQRLASKLSRSRR--RDQFHNALCSWRCLRERQRWFRCLDVDYLILKTFLLERFLHDFVFESMSPNTVREF 362          
BLAST of EWM28563.1 vs. NCBI_GenBank
Match: gi|1210525141|dbj|GAX16075.1| (hypothetical protein FisN_20Hh249 [Fistulifera solaris])

HSP 1 Score: 72.0182 bits (175), Expect = 7.499e-10
Identity = 36/134 (26.87%), Postives = 63/134 (47.01%), Query Frame = 0
Query:  271 VVYAALGLGGFRICQTGWGSQHAEYLVCLCIN--QQTFIAWRRYSAFAKFFRDIQRLYRDAADM-----------------FPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAF 385
            +V   + +  +R+ ++  G ++A++LV       Q T   W+RY  F +  + +   +   A +                  P    +W+ L++R++W+RCL  GYL+ K+ LLE FL  +L E   P LL  F
Sbjct:  358 IVTINISIASYRVVESSNGHKYAQFLVIYRQGSIQDTVGVWKRYRDFEELAKKVTHSHEGCASVIATVSPLAVTEEPEIEHLPNAITSWRLLKKRQRWFRCLDAGYLSLKVFLLERFLHDILFESTSPKLLQEF 491          
BLAST of EWM28563.1 vs. NCBI_GenBank
Match: gi|1210512073|dbj|GAX28928.1| (hypothetical protein FisN_20Lh249 [Fistulifera solaris])

HSP 1 Score: 71.633 bits (174), Expect = 8.379e-10
Identity = 36/134 (26.87%), Postives = 63/134 (47.01%), Query Frame = 0
Query:  271 VVYAALGLGGFRICQTGWGSQHAEYLVCLCIN--QQTFIAWRRYSAFAKFFRDIQRLYRDAADM-----------------FPVTRGAWKALERRRKWWRCLSVGYLAFKLGLLESFLEAVLVEVPGPDLLMAF 385
            +V   + +  +R+ ++  G ++A++LV       Q T   W+RY  F +  + +   +   A +                  P    +W+ L++R++W+RCL  GYL+ K+ LLE FL  +L E   P LL  F
Sbjct:  360 IVTINISIASYRVVESSNGHKYAQFLVIYRQGSIQDTVGVWKRYRDFEELAKKVTHSHEGCASVIATVSPLAVTEEPEIEHLPNAITSWRLLKKRQRWFRCLDAGYLSLKVFLLERFLHDILFESTSPKLLQEF 493          
The following BLAST results are available for this feature:
BLAST of EWM28563.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110981|gb|EWM28563.1|0.000e+0100.00phox domain-containing [Nannochloropsis gaditana][more]
gi|553184363|ref|XP_005854074.1|0.000e+098.68hypothetical protein NGA_2005800, partial [Nannoch... [more]
gi|224013630|ref|XP_002296479.1|2.075e-1126.72predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|298705064|emb|CBJ28523.1|2.075e-1134.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|698798336|ref|XP_009832197.1|8.954e-1135.90hypothetical protein H257_08109 [Aphanomyces astac... [more]
gi|673025672|ref|XP_008866797.1|1.206e-1036.75hypothetical protein H310_04291 [Aphanomyces invad... [more]
gi|397563279|gb|EJK43738.1|2.771e-1029.17hypothetical protein THAOC_37788 [Thalassiosira oc... [more]
gi|298712413|emb|CBJ33192.1|5.509e-1033.62conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210525141|dbj|GAX16075.1|7.499e-1026.87hypothetical protein FisN_20Hh249 [Fistulifera sol... [more]
gi|1210512073|dbj|GAX28928.1|8.379e-1026.87hypothetical protein FisN_20Lh249 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2107rna2107Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications