rna2103, rna2103 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2103
Unique Name	rna2103
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1305
Alignment location	CM002458.1:891930..895268 -

Link to JBrowse

Properties


Property Name	Value
Product	rna recognition motif-containing protein
Orig transcript id	gnl\|cribi\|Naga_100009g56.621.mrna
Orig protein id	gnl\|cribi\|Naga_100009g56.621
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:891930..895268 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g56	gene2011	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28578.1	cds2095	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2103	rna2103-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:891930..895268-
coding sequence from alignment at CM002458.1:891930..895268-

mRNA sequence

>rna2103 ID=rna2103|Name=rna2103|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp
ATGATCGCTGGCAATCCATTTCTTGCTCTACAGAGTACCACTGCCACTGT
GAGGGAGTGGGTCCATGCTTGCGTTACGGTAAATGACGCAGAAGGTATAC
AATATTTCTTCAGCTATTTCACATTTAGTCTTGCAGCTCCCTTCCATATA
TTTGTGACCGTATGTAAAAGGCTTCATCAGCATTGCGTTGAGTGGTTCTG
GGCAGTACTGAGATTTGTGGGGGGATACGGGCGTAGTGATGGAAATGAAA
CCGAAGGCGTTCAAGGATTGTGGAGCTTTTGCGCGCGTAGAACCTGCATT
CTCGGATGGCATCTTCACTCACACATTTCTGGGGCGGTCGTCAATACTTG
GCTGCAGAGAAGTGACTATTTCAAAAAAGGCGCCCAAGATTACCTCTATA
TACACGGCGACCCTGAAGCACCATCCTGGAAAATTACATTCATGGCTGTG
TATCATGGGTTGCAATCAGCATGGATGTGCAGACGACCTTATGTGGCCGA
CGTCAAGCGGCACGAGAGACTCCAGCTACTCGGATTCTCCTTGAGCCTTT
TCATCATAGCCATTCTTATCATTTCATTTCGATTGAGCAGGCTTCGTGAA
CGCAAATCACGAAAGCTTTACCTCGGGGTCCTCTCAGGCCTTGCAGTATT
GAGCTATGCCTTGTCATCACACCTGGGTCAAAGCCATCTACTACATGCTC
TAGACCTGAACGTCAGGCTGGCAGCGTCTGCGACACCCCTTCGACAGTTC
CTTTTTGTCATTCTCGTTTTTCTTATATACCTTTTGAAGAGCCTGGCGCT
CATCGGCGGTTCAATGACAATTTGGCATACTTATATTTTTTTGTGCACAA
CTTCCAAAATGGTATATTCTAACAAATGGGACAGCGAAGTATCTTCCCAG
GTGAACACAAATTTTTTATACCAAAATGCAAATTGTGAGGATGAAGTTGA
AGATATTTCTTCATTTTCGTCTTGCTCTTCGTCCATCACAGCAGATTTGA
TTGCCAGTCGCAATCAAAGTAGTCAAAGTCCTCTGCAATATGATAAAAAC
ATTTCCGAAAATACTGATTCGGATTCCAGCCCTAGAAAGATGTGTCCCCA
GTACAGCAGCAAAGCAACGACAAGAAGGGGTGTGAATGATCTCCTTGATG
AATTCACCGCACTGGTGGTAAAGGTGCAGACCACAGGTATTCGGGCCGCC
TCATGGGAGGCAGGCGAGCTTTTATACGACGCAGTTTTGACAATTTTGAT
CAAGCATGATCTCGAGCATGAACAAAATCTACTAAAAACGGAGCTGGGAG
ATTGA

protein sequence of rna2103

>rna2103-protein ID=rna2103-protein|Name=rna2103|organism=Nannochloropsis gaditana|type=polypeptide|length=1112bp
MEEGTFVEEPPPPAAVKEEGEDDAVASDEGGFNVQGKDVGMLDHGKSVKD
KRTETSDEAARASMEEEGEVLDEGEEEEPSGPASEQQKPDTGPQDAAEGL
EGGEGAPPKGSSDKASSVPVRQEEVEEGIEVFVGGLHQGVREAELRQVFG
KCGEVLGVRLMKDRRSKQMKGYAFVRYRSPQEARKAAEELTGCEVHGRAL
EVRSCEENKRLKVSNLDRRWTPEKFRDLMESALAAYSGIVLVELQEKSEV
KEKGEKGKGEKEGEEEEVEEGELEVEEGEVSESPKRGPEEKSTEGEGGAG
EREASADGQGAKEGYKGNAGYGYIHFDSNPPARTAMKGLEGKVVLKEEGR
VLKVEWARGEEAVEKRKAGGKKGAGPGQGEGKEAAVNSKTTIHVSRLPSD
VRKEELRERFGQYGKVTRVWISFEEIPVRGGGKRANDYAFVSFESEAMAA
RAIEGEAGAPWEVRGKTVEVKQARARSEGGAGGGKGQAQGKGGKGREREK
GGRGRGGEREWEEAGGARGGRAGRDRGRDRYGGMGDDPRFSSSRGPFRPA
PMPPLPPYDPPGPPPPLPPMPPPPPMMMMPAPPPPSQPYPPLPPTPYARP
GAMPSGPLTFQGQLGYVREGGEGGREYGGGRKRLRSGSEEWEGGREGGAW
ERGGSKRWRSEARSKYGPGGGREGGRDGGREDGRRRSGVQSRSPPGRQGW
REGGSYDEDRFSSEGDYPHRGLDEGRGVGRREERSRGGDRRRGGGEAGGD
VSGPMYYDRGEGEWNGVGRSRGPPPLPPPVAPLPPQQQPPPLPSTLAYGT
PVVSYPQQHHATQHQQPPLPAHAPQPAWGPAQQAYPPTAMPPPAYPPPQQ
GPPLHHLQQPPSAPISQYGPQAGYAAPASQQQYPQQQQQQQQQPPSEQMP
NPSPFPPQQPHISGAQSSATSRLMPPGAKKLLPPGARVGPSGKTAARMPG
DQSPQPQQEHRVPEHRQQQSHHHSQAQQPYYMNPPPTGQGYPPQNGFQQQ
QQQLQPPQQPYYPPPPQQPPAGYAYPPSNMPQQQQQQQQQQQQQQQQQQQ
QPYLPQAPPQSTPEGGGGRERNRGRPRSGRGRDRSSRGGGTDQPPPQRGD
KPYAFLQKRRGD

mRNA from alignment at CM002458.1:891930..895268-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2103 ID=rna2103|Name=rna2103|organism=Nannochloropsis gaditana|type=mRNA|length=3339bp|location=Sequence derived from alignment at CM002458.1:891930..895268- (Nannochloropsis gaditana)
ATGGAGGAAGGAACCTTTGTGGAGGAACCACCTCCGCCAGCTGCAGTAAA
GGAGGAAGGAGAGGACGACGCCGTCGCCTCTGACGAGGGTGGGTTTAACG
TACAGGGTAAAGACGTAGGAATGCTTGACCACGGGAAATCAGTCAAGGAC
AAACGCACTGAAACTTCCGATGAGGCAGCGAGGGCATCTATGGAAGAGGA
AGGGGAGGTGCTGGACGAGGGAGAGGAAGAGGAGCCGTCAGGCCCCGCCT
CGGAACAACAGAAGCCTGACACGGGACCGCAAGATGCAGCGGAGGGTCTC
GAGGGTGGGGAAGGAGCGCCTCCCAAAGGTAGTAGTGATAAAGCTTCCTC
TGTCCCGGTGCGCCAAGAGGAGGTGGAGGAGGGCATCGAGGTCTTTGTGG
GCGGGTTGCATCAAGGGGTGAGAGAAGCGGAGCTGCGGCAGGTCTTCGGA
AAATGTGGAGAGGTCCTGGGCGTGCGTCTGATGAAAGATCGTCGGTCAAA
GCAAATGAAGGGGTATGCGTTCGTGCGGTATCGGAGTCCGCAAGAAGCGA
GAAAAGCGGCGGAGGAGTTGACGGGTTGCGAGGTGCATGGGAGAGCGCTG
GAGGTCCGCTCCTGCGAAGAGAACAAGCGGCTGAAGGTGAGCAACCTGGA
CAGGAGGTGGACGCCGGAGAAATTTCGGGACTTGATGGAGTCGGCGTTGG
CGGCGTACTCCGGAATTGTACTCGTGGAGCTCCAGGAAAAGTCGGAGGTG
AAAGAGAAGGGGGAAAAGGGCAAGGGGGAAAAGGAGGGCGAGGAGGAGGA
AGTGGAAGAGGGGGAGTTGGAAGTAGAGGAAGGGGAGGTGTCTGAATCGC
CCAAAAGGGGACCAGAAGAGAAGTCGACCGAGGGAGAGGGCGGCGCAGGG
GAGCGGGAGGCGAGCGCGGACGGGCAGGGCGCCAAGGAGGGTTACAAAGG
CAATGCTGGCTACGGCTACATTCACTTTGATTCGAACCCGCCAGCCCGGA
CCGCGATGAAGGGTTTGGAGGGAAAAGTGGTCCTGAAAGAGGAAGGCCGG
GTCCTTAAGGTGGAGTGGGCGCGGGGGGAGGAGGCGGTGGAGAAGCGAAA
AGCGGGCGGGAAGAAAGGGGCGGGGCCTGGACAAGGGGAAGGGAAGGAGG
CAGCGGTGAACAGCAAAACGACGATTCACGTGTCACGCCTGCCGTCGGAC
GTGCGCAAGGAGGAGTTGAGGGAGCGCTTTGGGCAATATGGGAAGGTGAC
GCGGGTTTGGATCTCATTCGAGGAGATCCCGGTCCGGGGAGGGGGCAAGC
GGGCGAACGACTACGCCTTCGTCTCGTTCGAGAGTGAGGCGATGGCGGCA
CGGGCGATAGAGGGGGAGGCGGGGGCGCCTTGGGAGGTCCGGGGGAAGAC
GGTGGAAGTGAAGCAGGCACGGGCTCGGAGCGAGGGAGGGGCGGGGGGGG
GCAAGGGGCAGGCCCAGGGGAAGGGCGGGAAAGGGAGGGAGCGAGAGAAG
GGGGGAAGGGGGAGGGGAGGGGAGCGCGAATGGGAGGAGGCTGGGGGAGC
GAGGGGCGGGCGGGCGGGCAGAGACAGGGGCCGCGATCGGTACGGCGGGA
TGGGCGACGACCCCCGCTTTTCCTCTTCCCGAGGGCCCTTCAGGCCCGCC
CCGATGCCCCCCCTGCCTCCCTACGACCCACCAGGGCCTCCTCCCCCTCT
TCCACCCATGCCTCCCCCTCCTCCCATGATGATGATGCCAGCACCCCCAC
CCCCGTCGCAGCCTTACCCCCCCCTTCCCCCCACGCCGTACGCGAGACCG
GGGGCCATGCCGAGTGGGCCCCTGACCTTCCAGGGCCAGCTGGGGTATGT
GCGGGAGGGGGGGGAGGGCGGGAGGGAGTATGGTGGTGGCCGAAAGCGGC
TGCGAAGTGGGAGCGAGGAATGGGAGGGGGGGCGGGAGGGAGGGGCGTGG
GAACGGGGCGGCAGCAAGCGCTGGCGTTCGGAGGCCCGGTCAAAGTATGG
GCCCGGCGGGGGGAGGGAGGGAGGGAGGGATGGAGGGAGGGAGGACGGGC
GGCGTCGGAGTGGGGTGCAGAGTCGTTCTCCTCCAGGTCGACAAGGATGG
CGGGAAGGCGGGTCTTACGATGAGGATCGCTTCTCCTCGGAAGGAGACTA
TCCACATCGCGGGCTCGACGAGGGGAGAGGAGTTGGGCGTCGGGAGGAAC
GGAGCCGTGGCGGAGACCGGCGCCGAGGGGGAGGAGAAGCAGGGGGTGAC
GTCAGTGGTCCTATGTATTATGACCGGGGGGAGGGCGAGTGGAATGGCGT
GGGGCGGAGCCGTGGACCTCCGCCGCTTCCTCCGCCGGTAGCGCCCCTCC
CTCCCCAACAACAGCCGCCACCCTTACCGTCCACGTTGGCCTACGGCACT
CCTGTTGTCTCATACCCTCAGCAACATCATGCAACCCAACACCAGCAGCC
TCCGCTTCCTGCGCACGCGCCTCAACCTGCCTGGGGCCCGGCACAACAGG
CTTACCCTCCGACGGCCATGCCCCCCCCCGCCTATCCTCCACCGCAGCAG
GGTCCTCCCCTTCATCACCTTCAGCAGCCGCCCTCGGCTCCCATCTCCCA
ATATGGGCCACAGGCTGGCTATGCGGCACCTGCATCTCAACAGCAATACC
CGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCCTCGGAGCAGATGCCC
AATCCATCACCCTTTCCACCCCAGCAGCCGCACATCTCGGGGGCTCAGTC
CTCTGCCACCTCCCGTCTGATGCCTCCAGGCGCCAAGAAGCTCTTACCAC
CGGGAGCACGAGTGGGCCCAAGTGGAAAGACGGCTGCTCGCATGCCTGGA
GACCAATCGCCGCAGCCCCAGCAAGAGCACAGGGTCCCTGAGCATCGTCA
GCAGCAGTCCCACCACCATTCTCAAGCTCAGCAGCCTTACTACATGAACC
CTCCTCCCACAGGACAAGGCTATCCTCCCCAGAATGGTTTTCAGCAGCAA
CAGCAGCAGTTACAACCGCCACAACAGCCGTATTACCCACCGCCACCGCA
GCAGCCACCTGCAGGCTACGCATACCCACCTTCCAACATGCCTCAACAAC
AGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCTTATTTGCCACAGGCGCCGCCTCAATCAACACCTGAGGGCGGTGG
AGGCAGAGAGCGCAATCGTGGCCGTCCAAGAAGCGGTCGAGGTCGTGATA
GGAGCTCGCGTGGAGGGGGTACTGATCAACCACCACCACAACGCGGTGAC
AAACCTTACGCCTTTCTACAAAAGCGACGTGGAGACTAG

Coding sequence (CDS) from alignment at CM002458.1:891930..895268-

>rna2103 ID=rna2103|Name=rna2103|organism=Nannochloropsis gaditana|type=CDS|length=3339bp|location=Sequence derived from alignment at CM002458.1:891930..895268- (Nannochloropsis gaditana)
ATGGAGGAAGGAACCTTTGTGGAGGAACCACCTCCGCCAGCTGCAGTAAA
GGAGGAAGGAGAGGACGACGCCGTCGCCTCTGACGAGGGTGGGTTTAACG
TACAGGGTAAAGACGTAGGAATGCTTGACCACGGGAAATCAGTCAAGGAC
AAACGCACTGAAACTTCCGATGAGGCAGCGAGGGCATCTATGGAAGAGGA
AGGGGAGGTGCTGGACGAGGGAGAGGAAGAGGAGCCGTCAGGCCCCGCCT
CGGAACAACAGAAGCCTGACACGGGACCGCAAGATGCAGCGGAGGGTCTC
GAGGGTGGGGAAGGAGCGCCTCCCAAAGGTAGTAGTGATAAAGCTTCCTC
TGTCCCGGTGCGCCAAGAGGAGGTGGAGGAGGGCATCGAGGTCTTTGTGG
GCGGGTTGCATCAAGGGGTGAGAGAAGCGGAGCTGCGGCAGGTCTTCGGA
AAATGTGGAGAGGTCCTGGGCGTGCGTCTGATGAAAGATCGTCGGTCAAA
GCAAATGAAGGGGTATGCGTTCGTGCGGTATCGGAGTCCGCAAGAAGCGA
GAAAAGCGGCGGAGGAGTTGACGGGTTGCGAGGTGCATGGGAGAGCGCTG
GAGGTCCGCTCCTGCGAAGAGAACAAGCGGCTGAAGGTGAGCAACCTGGA
CAGGAGGTGGACGCCGGAGAAATTTCGGGACTTGATGGAGTCGGCGTTGG
CGGCGTACTCCGGAATTGTACTCGTGGAGCTCCAGGAAAAGTCGGAGGTG
AAAGAGAAGGGGGAAAAGGGCAAGGGGGAAAAGGAGGGCGAGGAGGAGGA
AGTGGAAGAGGGGGAGTTGGAAGTAGAGGAAGGGGAGGTGTCTGAATCGC
CCAAAAGGGGACCAGAAGAGAAGTCGACCGAGGGAGAGGGCGGCGCAGGG
GAGCGGGAGGCGAGCGCGGACGGGCAGGGCGCCAAGGAGGGTTACAAAGG
CAATGCTGGCTACGGCTACATTCACTTTGATTCGAACCCGCCAGCCCGGA
CCGCGATGAAGGGTTTGGAGGGAAAAGTGGTCCTGAAAGAGGAAGGCCGG
GTCCTTAAGGTGGAGTGGGCGCGGGGGGAGGAGGCGGTGGAGAAGCGAAA
AGCGGGCGGGAAGAAAGGGGCGGGGCCTGGACAAGGGGAAGGGAAGGAGG
CAGCGGTGAACAGCAAAACGACGATTCACGTGTCACGCCTGCCGTCGGAC
GTGCGCAAGGAGGAGTTGAGGGAGCGCTTTGGGCAATATGGGAAGGTGAC
GCGGGTTTGGATCTCATTCGAGGAGATCCCGGTCCGGGGAGGGGGCAAGC
GGGCGAACGACTACGCCTTCGTCTCGTTCGAGAGTGAGGCGATGGCGGCA
CGGGCGATAGAGGGGGAGGCGGGGGCGCCTTGGGAGGTCCGGGGGAAGAC
GGTGGAAGTGAAGCAGGCACGGGCTCGGAGCGAGGGAGGGGCGGGGGGGG
GCAAGGGGCAGGCCCAGGGGAAGGGCGGGAAAGGGAGGGAGCGAGAGAAG
GGGGGAAGGGGGAGGGGAGGGGAGCGCGAATGGGAGGAGGCTGGGGGAGC
GAGGGGCGGGCGGGCGGGCAGAGACAGGGGCCGCGATCGGTACGGCGGGA
TGGGCGACGACCCCCGCTTTTCCTCTTCCCGAGGGCCCTTCAGGCCCGCC
CCGATGCCCCCCCTGCCTCCCTACGACCCACCAGGGCCTCCTCCCCCTCT
TCCACCCATGCCTCCCCCTCCTCCCATGATGATGATGCCAGCACCCCCAC
CCCCGTCGCAGCCTTACCCCCCCCTTCCCCCCACGCCGTACGCGAGACCG
GGGGCCATGCCGAGTGGGCCCCTGACCTTCCAGGGCCAGCTGGGGTATGT
GCGGGAGGGGGGGGAGGGCGGGAGGGAGTATGGTGGTGGCCGAAAGCGGC
TGCGAAGTGGGAGCGAGGAATGGGAGGGGGGGCGGGAGGGAGGGGCGTGG
GAACGGGGCGGCAGCAAGCGCTGGCGTTCGGAGGCCCGGTCAAAGTATGG
GCCCGGCGGGGGGAGGGAGGGAGGGAGGGATGGAGGGAGGGAGGACGGGC
GGCGTCGGAGTGGGGTGCAGAGTCGTTCTCCTCCAGGTCGACAAGGATGG
CGGGAAGGCGGGTCTTACGATGAGGATCGCTTCTCCTCGGAAGGAGACTA
TCCACATCGCGGGCTCGACGAGGGGAGAGGAGTTGGGCGTCGGGAGGAAC
GGAGCCGTGGCGGAGACCGGCGCCGAGGGGGAGGAGAAGCAGGGGGTGAC
GTCAGTGGTCCTATGTATTATGACCGGGGGGAGGGCGAGTGGAATGGCGT
GGGGCGGAGCCGTGGACCTCCGCCGCTTCCTCCGCCGGTAGCGCCCCTCC
CTCCCCAACAACAGCCGCCACCCTTACCGTCCACGTTGGCCTACGGCACT
CCTGTTGTCTCATACCCTCAGCAACATCATGCAACCCAACACCAGCAGCC
TCCGCTTCCTGCGCACGCGCCTCAACCTGCCTGGGGCCCGGCACAACAGG
CTTACCCTCCGACGGCCATGCCCCCCCCCGCCTATCCTCCACCGCAGCAG
GGTCCTCCCCTTCATCACCTTCAGCAGCCGCCCTCGGCTCCCATCTCCCA
ATATGGGCCACAGGCTGGCTATGCGGCACCTGCATCTCAACAGCAATACC
CGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCCTCGGAGCAGATGCCC
AATCCATCACCCTTTCCACCCCAGCAGCCGCACATCTCGGGGGCTCAGTC
CTCTGCCACCTCCCGTCTGATGCCTCCAGGCGCCAAGAAGCTCTTACCAC
CGGGAGCACGAGTGGGCCCAAGTGGAAAGACGGCTGCTCGCATGCCTGGA
GACCAATCGCCGCAGCCCCAGCAAGAGCACAGGGTCCCTGAGCATCGTCA
GCAGCAGTCCCACCACCATTCTCAAGCTCAGCAGCCTTACTACATGAACC
CTCCTCCCACAGGACAAGGCTATCCTCCCCAGAATGGTTTTCAGCAGCAA
CAGCAGCAGTTACAACCGCCACAACAGCCGTATTACCCACCGCCACCGCA
GCAGCCACCTGCAGGCTACGCATACCCACCTTCCAACATGCCTCAACAAC
AGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCTTATTTGCCACAGGCGCCGCCTCAATCAACACCTGAGGGCGGTGG
AGGCAGAGAGCGCAATCGTGGCCGTCCAAGAAGCGGTCGAGGTCGTGATA
GGAGCTCGCGTGGAGGGGGTACTGATCAACCACCACCACAACGCGGTGAC
AAACCTTACGCCTTTCTACAAAAGCGACGTGGAGACTAG

Synonyms

Publications