EWM28578.1, cds2095 (CDS) Nannochloropsis gaditana

Overview
NameEWM28578.1
Unique Namecds2095
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:891930..895268 -

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Properties
Property NameValue
Protein idEWM28578.1
Productrna recognition motif-containing protein
Orig transcript idgnl|cribi|Naga_100009g56.621.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:891930..895268 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
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BLAST of EWM28578.1 vs. NCBI_GenBank
Match: gi|585110996|gb|EWM28578.1| (rna recognition motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 2158.64 bits (5592), Expect = 0.000e+0
Identity = 1112/1112 (100.00%), Postives = 1112/1112 (100.00%), Query Frame = 0 
Query:    1 MEEGTFVEEPPPPAAVKEEGEDDAVASDEGGFNVQGKDVGMLDHGKSVKDKRTETSDEAARASMEEEGEVLDEGEEEEPSGPASEQQKPDTGPQDAAEGLEGGEGAPPKGSSDKASSVPVRQEEVEEGIEVFVGGLHQGVREAELRQVFGKCGEVLGVRLMKDRRSKQMKGYAFVRYRSPQEARKAAEELTGCEVHGRALEVRSCEENKRLKVSNLDRRWTPEKFRDLMESALAAYSGIVLVELQEKSEVKEKGEKGKGEKEGEEEEVEEGELEVEEGEVSESPKRGPEEKSTEGEGGAGEREASADGQGAKEGYKGNAGYGYIHFDSNPPARTAMKGLEGKVVLKEEGRVLKVEWARGEEAVEKRKAGGKKGAGPGQGEGKEAAVNSKTTIHVSRLPSDVRKEELRERFGQYGKVTRVWISFEEIPVRGGGKRANDYAFVSFESEAMAARAIEGEAGAPWEVRGKTVEVKQARARSEGGAGGGKGQAQGKGGKGREREKGGRGRGGEREWEEAGGARGGRAGRDRGRDRYGGMGDDPRFSSSRGPFRPAPMPPLPPYDPPGPPPPLPPMPPPPPMMMMPAPPPPSQPYPPLPPTPYARPGAMPSGPLTFQGQLGYVREGGEGGREYGGGRKRLRSGSEEWEGGREGGAWERGGSKRWRSEARSKYGPGGGREGGRDGGREDGRRRSGVQSRSPPGRQGWREGGSYDEDRFSSEGDYPHRGLDEGRGVGRREERSRGGDRRRGGGEAGGDVSGPMYYDRGEGEWNGVGRSRGPPPLPPPVAPLPPQQQPPPLPSTLAYGTPVVSYPQQHHATQHQQPPLPAHAPQPAWGPAQQAYPPTAMPPPAYPPPQQGPPLHHLQQPPSAPISQYGPQAGYAAPASQQQYPQQQQQQQQQPPSEQMPNPSPFPPQQPHISGAQSSATSRLMPPGAKKLLPPGARVGPSGKTAARMPGDQSPQPQQEHRVPEHRQQQSHHHSQAQQPYYMNPPPTGQGYPPQNGFQQQQQQLQPPQQPYYPPPPQQPPAGYAYPPSNMPQQQQQQQQQQQQQQQQQQQQPYLPQAPPQSTPEGGGGRERNRGRPRSGRGRDRSSRGGGTDQPPPQRGDKPYAFLQKRRGD 1112
            MEEGTFVEEPPPPAAVKEEGEDDAVASDEGGFNVQGKDVGMLDHGKSVKDKRTETSDEAARASMEEEGEVLDEGEEEEPSGPASEQQKPDTGPQDAAEGLEGGEGAPPKGSSDKASSVPVRQEEVEEGIEVFVGGLHQGVREAELRQVFGKCGEVLGVRLMKDRRSKQMKGYAFVRYRSPQEARKAAEELTGCEVHGRALEVRSCEENKRLKVSNLDRRWTPEKFRDLMESALAAYSGIVLVELQEKSEVKEKGEKGKGEKEGEEEEVEEGELEVEEGEVSESPKRGPEEKSTEGEGGAGEREASADGQGAKEGYKGNAGYGYIHFDSNPPARTAMKGLEGKVVLKEEGRVLKVEWARGEEAVEKRKAGGKKGAGPGQGEGKEAAVNSKTTIHVSRLPSDVRKEELRERFGQYGKVTRVWISFEEIPVRGGGKRANDYAFVSFESEAMAARAIEGEAGAPWEVRGKTVEVKQARARSEGGAGGGKGQAQGKGGKGREREKGGRGRGGEREWEEAGGARGGRAGRDRGRDRYGGMGDDPRFSSSRGPFRPAPMPPLPPYDPPGPPPPLPPMPPPPPMMMMPAPPPPSQPYPPLPPTPYARPGAMPSGPLTFQGQLGYVREGGEGGREYGGGRKRLRSGSEEWEGGREGGAWERGGSKRWRSEARSKYGPGGGREGGRDGGREDGRRRSGVQSRSPPGRQGWREGGSYDEDRFSSEGDYPHRGLDEGRGVGRREERSRGGDRRRGGGEAGGDVSGPMYYDRGEGEWNGVGRSRGPPPLPPPVAPLPPQQQPPPLPSTLAYGTPVVSYPQQHHATQHQQPPLPAHAPQPAWGPAQQAYPPTAMPPPAYPPPQQGPPLHHLQQPPSAPISQYGPQAGYAAPASQQQYPQQQQQQQQQPPSEQMPNPSPFPPQQPHISGAQSSATSRLMPPGAKKLLPPGARVGPSGKTAARMPGDQSPQPQQEHRVPEHRQQQSHHHSQAQQPYYMNPPPTGQGYPPQNGFQQQQQQLQPPQQPYYPPPPQQPPAGYAYPPSNMPQQQQQQQQQQQQQQQQQQQQPYLPQAPPQSTPEGGGGRERNRGRPRSGRGRDRSSRGGGTDQPPPQRGDKPYAFLQKRRGD
Sbjct:    1 MEEGTFVEEPPPPAAVKEEGEDDAVASDEGGFNVQGKDVGMLDHGKSVKDKRTETSDEAARASMEEEGEVLDEGEEEEPSGPASEQQKPDTGPQDAAEGLEGGEGAPPKGSSDKASSVPVRQEEVEEGIEVFVGGLHQGVREAELRQVFGKCGEVLGVRLMKDRRSKQMKGYAFVRYRSPQEARKAAEELTGCEVHGRALEVRSCEENKRLKVSNLDRRWTPEKFRDLMESALAAYSGIVLVELQEKSEVKEKGEKGKGEKEGEEEEVEEGELEVEEGEVSESPKRGPEEKSTEGEGGAGEREASADGQGAKEGYKGNAGYGYIHFDSNPPARTAMKGLEGKVVLKEEGRVLKVEWARGEEAVEKRKAGGKKGAGPGQGEGKEAAVNSKTTIHVSRLPSDVRKEELRERFGQYGKVTRVWISFEEIPVRGGGKRANDYAFVSFESEAMAARAIEGEAGAPWEVRGKTVEVKQARARSEGGAGGGKGQAQGKGGKGREREKGGRGRGGEREWEEAGGARGGRAGRDRGRDRYGGMGDDPRFSSSRGPFRPAPMPPLPPYDPPGPPPPLPPMPPPPPMMMMPAPPPPSQPYPPLPPTPYARPGAMPSGPLTFQGQLGYVREGGEGGREYGGGRKRLRSGSEEWEGGREGGAWERGGSKRWRSEARSKYGPGGGREGGRDGGREDGRRRSGVQSRSPPGRQGWREGGSYDEDRFSSEGDYPHRGLDEGRGVGRREERSRGGDRRRGGGEAGGDVSGPMYYDRGEGEWNGVGRSRGPPPLPPPVAPLPPQQQPPPLPSTLAYGTPVVSYPQQHHATQHQQPPLPAHAPQPAWGPAQQAYPPTAMPPPAYPPPQQGPPLHHLQQPPSAPISQYGPQAGYAAPASQQQYPQQQQQQQQQPPSEQMPNPSPFPPQQPHISGAQSSATSRLMPPGAKKLLPPGARVGPSGKTAARMPGDQSPQPQQEHRVPEHRQQQSHHHSQAQQPYYMNPPPTGQGYPPQNGFQQQQQQLQPPQQPYYPPPPQQPPAGYAYPPSNMPQQQQQQQQQQQQQQQQQQQQPYLPQAPPQSTPEGGGGRERNRGRPRSGRGRDRSSRGGGTDQPPPQRGDKPYAFLQKRRGD 1112
The following BLAST results are available for this feature:
BLAST of EWM28578.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110996|gb|EWM28578.1|0.000e+0100.00rna recognition motif-containing protein [Nannochl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2103rna2103Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications