rna2075, rna2075 (mRNA) Nannochloropsis gaditana

Overview
Namerna2075
Unique Namerna2075
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1162
Alignment locationCM002458.1:828802..829421 -

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Properties
Property NameValue
Productubiquitin
Orig transcript idgnl|cribi|Naga_100009g87.633.mrna
Orig protein idgnl|cribi|Naga_100009g87.633
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:828802..829421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g87gene1985Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2075rna2075-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28590.1cds2067Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2075 ID=rna2075|Name=rna2075|organism=Nannochloropsis gaditana|type=mRNA|length=1162bp
TCAATTGACGCAACATGATAAACCAGATTCTCATCCATCACCTGTGAACA
CACCACACAGGAGACTCGCTTTCTGACAACCCTGGTTCACTTGGGTCCGA
AAAGCTGCCCGTCTCGTGTGACGTACGCCTCGTATCGGATTGGAAGGGGA
ATCCGTGTCTTTTGGACTTTTCAAAGCCTCTCGTCTTTGGAGGGATTGGA
GGTGCTTACGCCGCACTTGTAGAGTATGACGGGTATGAGGTTACCGATGG
TAGCTGTGTGCGTCATGGCCACATCCACAATTTGCGCTGCTTTCCTTCTT
CCCAGCCCTTCCCCCCGCGCCATCACCTCTTGTCGAATGGGAGCTATGAC
TTCTAACCCTTCTCCTGTGCAACCCAGACCGCCGCTCCCTGATAATTTTT
ACGCTGAGTCTTTGCTTGATAAAGTTGCTCTTGCGCTTTTTCGACGCCTT
GTCCAACGTGAAATTGGTTACGTGTCGAGCAAACCGGGCTACGATGGCCT
CATTGAGGAGGCCCGTCATTACCAGCTTCAGCCCGGAGTGACTGCCGAGG
ACCAACAAAAAATGGTCAAGACCTGTCTAGCCACCATTGCTGGTCCATTA
GTACCTCCTGTGTACAGAACATTCATGGCGCCGTGGTTCTGGGCTCCCTT
TTTGACGGCTATCTTCACGCCGCCATTTTTCAAGTTCCTAGTGGGTCCTA
ACAGGTACGATGTCCGGGATGACGGGCAAGCGGGCGGAGTGTACGCGGAA
CGATGTCGCTTCTTGGAGGAGACAAACTGCAAGGGTCTTTGTCTGCACAT
GTGCAAATTACCGACGCAGCAGTTTTTCAAGGAGACCCTCGGGCTGGACA
TGACAATGACGCCCGATTACGACACGTACGAGTGTCGCCTTTCTTTTGGC
TTGGCTCCCAAAGCAGTGGAGGACGATCCAAGCATTCCCAAAGGATGTTT
GACTGGGTGCAGTGCGGTAACGGCCTTGCAAGAGAAGAGATTGGACAGGG
GTACTGTATGTGGCAAGTAGGCTCTCCATTACAGATGTTTGCTTGGGTTG
ACAAGTGTGCGGGGCCCTCATGTCAATCATGCGCAGTAGCAATGAATAAA
AGGATAAGAAATATGGCATAGTGTAAACAAGGAAAAAAATACAGCTGACG
TGCCCTCTTGAT
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protein sequence of rna2075

>rna2075-protein ID=rna2075-protein|Name=rna2075|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCY
ARLPPRAKNCRKKKCGHTNHLRIKKKLKRVFAAEARVTVQIETGGGRGAT
MSERGTEGLKHGEARRCQLAHVLCMYTRSVVRPFLGVSALVA
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mRNA from alignment at CM002458.1:828802..829421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2075 ID=rna2075|Name=rna2075|organism=Nannochloropsis gaditana|type=mRNA|length=620bp|location=Sequence derived from alignment at CM002458.1:828802..829421- (Nannochloropsis gaditana)
ATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGT
GGAGCCCAGTGACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGG
AGGGTATCCCCCCTGATCAGCAGCGCCTCATTTTTGCGGGGAAGCAGCTG
GAGGACGGGCGCACGTTGTCTGACTACAACATTCAGAAAGAGTCTACCCT
ACATTTGGTCCTGCGATTGCGTGGCGGTGTCTACGATCCCTCCCTCGCTG
CGCTGGCCAAGACTTTCAACTGCGAGAAGATGATCTGCCGCAAGTGCTAC
GCCCGCCTGCCCCCCCGCGCCAAAAATTGCCGGAAGAAGAAGTGCGGGCA
CACCAATCACCTGCGCATTAAGAAGAAGCTCAAGTAAAGCACTGACACTG
GTGATGGGACAGGGGCACAGATAGGCGGGTTTTCGCGGCTGAGGCACGCG
TAACGGTTCAAATAGAGACAGGCGGGGGGCGAGGCGCGACTATGAGTGAA
AGAGGGACTGAGGGGCTAAAGCATGGGGAGGCAAGGAGGTGTCAACTTGC
TCACGTACTGTGTATGTATACCCGCTCAGTTGTCCGCCCATTCCTTGGTG
TGAGTGCCTTGGTGGCCTAG
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Coding sequence (CDS) from alignment at CM002458.1:828802..829421-

>rna2075 ID=rna2075|Name=rna2075|organism=Nannochloropsis gaditana|type=CDS|length=1158bp|location=Sequence derived from alignment at CM002458.1:828802..829421- (Nannochloropsis gaditana)
GCGGGTTTTCGCGGCTGAGGCACGCGTAACGGTTCAAATAGAGACAGGCG
GGGGGCGAGGCGCGACTATGAGTGAAAGAGGGACTGAGGGGCTAAAGCAT
GGGGAGGCAAGGAGGTGTCAACTTGCTCACGTACTGTGTATGTATACCCG
CTCAGTTGTCCGCCCATTCCTTGGTGTGAGTGCCTTGGTGGCCTAGATGC
AAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAG
CCCAGTGACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGG
TATCCCCCCTGATCAGCAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGG
ACGGGCGCACGTTGTCTGACTACAACATTCAGAAAGAGTCTACCCTACAT
TTGGTCCTGCGATTGCGTGGCGGTGTCTACGATCCCTCCCTCGCTGCGCT
GGCCAAGACTTTCAACTGCGAGAAGATGATCTGCCGCAAGTGCTACGCCC
GCCTGCCCCCCCGCGCCAAAAATTGCCGGAAGAAGAAGTGCGGGCACACC
AATCACCTGCGCATTAAGAAGAAGCTCAAGCGGGTTTTCGCGGCTGAGGC
ACGCGTAACGGTTCAAATAGAGACAGGCGGGGGGCGAGGCGCGACTATGA
GTGAAAGAGGGACTGAGGGGCTAAAGCATGGGGAGGCAAGGAGGTGTCAA
CTTGCTCACGTACTGTGTATGTATACCCGCTCAGTTGTCCGCCCATTCCT
TGGTGTGAGTGCCTTGGTGGCCTAGATGCAAATCTTTGTTAAGACGCTGA
CGGGCAAGACCATCACGCTCGACGTGGAGCCCAGTGACACGATCGAGAAT
GTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAGCAGCG
CCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACT
ACAACATTCAGAAAGAGTCTACCCTACATTTGGTCCTGCGATTGCGTGGC
GGTGTCTACGATCCCTCCCTCGCTGCGCTGGCCAAGACTTTCAACTGCGA
GAAGATGATCTGCCGCAAGTGCTACGCCCGCCTGCCCCCCCGCGCCAAAA
ATTGCCGGAAGAAGAAGTGCGGGCACACCAATCACCTGCGCATTAAGAAG
AAGCTCAA
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Synonyms
Publications