EWM28590.1, cds2067 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|585111008|gb|EWM28590.1| (ubiquitin [Nannochloropsis gaditana]) HSP 1 Score: 396.356 bits (1017), Expect = 9.604e-140 Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLKRVFAAEARVTVQIETGGGRGATMSERGTEGLKHGEARRCQLAHVLCMYTRSVVRPFLGVSALVA 192
MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLKRVFAAEARVTVQIETGGGRGATMSERGTEGLKHGEARRCQLAHVLCMYTRSVVRPFLGVSALVA
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLKRVFAAEARVTVQIETGGGRGATMSERGTEGLKHGEARRCQLAHVLCMYTRSVVRPFLGVSALVA 192
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|219123892|ref|XP_002182250.1| (ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406211|gb|EEC46151.1| ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 243.817 bits (621), Expect = 2.948e-80 Identity = 117/128 (91.41%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
MQIFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FNC+K +CRKCYARLPPRA NCRKKKCGHT+ LR KKKLK
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKGFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|1210517732|dbj|GAX23428.1| (large subunit ribosomal protein L40e [Fistulifera solaris] >gi|1210528486|dbj|GAX12683.1| large subunit ribosomal protein L40e [Fistulifera solaris]) HSP 1 Score: 243.432 bits (620), Expect = 4.096e-80 Identity = 116/128 (90.62%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
MQIFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDP+LA LAK FNC+K +CRKCYARLPPRA NCRKKKCGHT+ LR KKKLK
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPTLAMLAKKFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|873236768|emb|CEL98446.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 244.588 bits (623), Expect = 5.318e-80 Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
MQIFVKTLTGKTITLDVEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV +PSLA LA+ +NCEKMICRKCYARLPPRA NCRKKKCGHTN LR KKKLK
Sbjct: 48 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLAVLARKYNCEKMICRKCYARLPPRAVNCRKKKCGHTNQLRPKKKLK 175
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|672828191|gb|KFH73080.1| (ubiquitin-60S ribosomal protein L40 [Mortierella verticillata NRRL 6337]) HSP 1 Score: 241.891 bits (616), Expect = 1.476e-79 Identity = 115/128 (89.84%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
MQIFVKTLTGKTITL+VE SDTI+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA FNC+KMICRKCYARLPPRA NCRKKKCGH+N LRIKKKLK
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKKKCGHSNQLRIKKKLK 128
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|545712330|ref|XP_005708470.1| (ubiquitin [Galdieria sulphuraria] >gi|452824950|gb|EME31950.1| ubiquitin [Galdieria sulphuraria]) HSP 1 Score: 241.506 bits (615), Expect = 2.264e-79 Identity = 114/128 (89.06%), Postives = 122/128 (95.31%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +P+LAALA+ +NC+KMICRKCYARLP RA NCRKKKCGHTN LR+KKKLK
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPTLAALARKYNCDKMICRKCYARLPARAHNCRKKKCGHTNELRVKKKLK 128
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|397592983|gb|EJK55830.1| (hypothetical protein THAOC_24391 [Thalassiosira oceanica]) HSP 1 Score: 243.047 bits (619), Expect = 3.480e-79 Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
M IFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FNCEK ICRKCYARLPP+A NCRKKKCGH++ LR KKKLK
Sbjct: 57 MAIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKKFNCEKQICRKCYARLPPKATNCRKKKCGHSSQLRPKKKLK 184
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|597583033|ref|XP_007294573.1| (ubiquitin [Marssonina brunnea f. sp. 'multigermtubi' MB_m1] >gi|406862417|gb|EKD15468.1| ubiquitin [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]) HSP 1 Score: 240.736 bits (613), Expect = 9.108e-79 Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA FNC+KMICRKCYARLPPRA NCRKKKCGHTN LR KKKLK
Sbjct: 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 150
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|301108213|ref|XP_002903188.1| (ubiquitin-ribosomal fusion protein, putative [Phytophthora infestans T30-4] >gi|675168847|ref|XP_008893308.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica INRA-310] >gi|262097560|gb|EEY55612.1| ubiquitin-ribosomal fusion protein, putative [Phytophthora infestans T30-4] >gi|566022186|gb|ETI45097.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica P1569] >gi|567959503|gb|ETK85074.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica] >gi|567988217|gb|ETL38498.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica] >gi|568017449|gb|ETL91626.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica] >gi|568047842|gb|ETM44910.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica] >gi|568106893|gb|ETN21523.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica INRA-310] >gi|570325762|gb|ETO73710.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica P1976] >gi|570949659|gb|ETP14916.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica CJ01A1] >gi|570983086|gb|ETP42981.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica P10297] >gi|970657972|gb|KUF95792.1| hypothetical protein AM588_10006882 [Phytophthora nicotianae] >gi|1214699530|gb|OWZ12310.1| Ubiquitin-ribosomal fusion protein [Phytophthora megakarya]) HSP 1 Score: 239.58 bits (610), Expect = 1.050e-78 Identity = 115/128 (89.84%), Postives = 120/128 (93.75%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG +P+LAALAK NCEK ICR CYARLPPRA NCRKKKCGH+N LRIKKKLK
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAIEPTLAALAKKTNCEKQICRICYARLPPRATNCRKKKCGHSNQLRIKKKLK 128
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|672826748|gb|KFH71638.1| (ubiquitin-60S ribosomal protein L40 [Mortierella verticillata NRRL 6337]) HSP 1 Score: 239.58 bits (610), Expect = 1.224e-78 Identity = 114/128 (89.06%), Postives = 120/128 (93.75%), Query Frame = 0
Query: 1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA FNC+KMICRKCYARLPPRA NCRKKKCGH+N LRIKKKLK
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKKKCGHSNQLRIKKKLK 128 The following BLAST results are available for this feature:
BLAST of EWM28590.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|