EWM28590.1, cds2067 (CDS) Nannochloropsis gaditana

Overview
NameEWM28590.1
Unique Namecds2067
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:829039..829421 -
Alignment locationCM002458.1:828802..828997 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28590.1
Productubiquitin
Orig transcript idgnl|cribi|Naga_100009g87.633.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:829039..829421 -
CM002458.1supercontigCM002458.1:828802..828997 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR029071Ubiquitin-rel_dom
IPR019954Ubiquitin_CS
IPR001975Ribosomal_L40e
IPR000626Ubiquitin-like
IPR019956Ubiquitin
Homology
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|585111008|gb|EWM28590.1| (ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 396.356 bits (1017), Expect = 9.604e-140
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLKRVFAAEARVTVQIETGGGRGATMSERGTEGLKHGEARRCQLAHVLCMYTRSVVRPFLGVSALVA 192
            MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLKRVFAAEARVTVQIETGGGRGATMSERGTEGLKHGEARRCQLAHVLCMYTRSVVRPFLGVSALVA
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLKRVFAAEARVTVQIETGGGRGATMSERGTEGLKHGEARRCQLAHVLCMYTRSVVRPFLGVSALVA 192          
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|219123892|ref|XP_002182250.1| (ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406211|gb|EEC46151.1| ubiquitin extension protein 1/2 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 243.817 bits (621), Expect = 2.948e-80
Identity = 117/128 (91.41%), Postives = 121/128 (94.53%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
            MQIFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FNC+K +CRKCYARLPPRA NCRKKKCGHT+ LR KKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKGFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128          
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|1210517732|dbj|GAX23428.1| (large subunit ribosomal protein L40e [Fistulifera solaris] >gi|1210528486|dbj|GAX12683.1| large subunit ribosomal protein L40e [Fistulifera solaris])

HSP 1 Score: 243.432 bits (620), Expect = 4.096e-80
Identity = 116/128 (90.62%), Postives = 121/128 (94.53%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
            MQIFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDP+LA LAK FNC+K +CRKCYARLPPRA NCRKKKCGHT+ LR KKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPTLAMLAKKFNCDKAVCRKCYARLPPRATNCRKKKCGHTSQLRPKKKLK 128          
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|873236768|emb|CEL98446.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 244.588 bits (623), Expect = 5.318e-80
Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
            MQIFVKTLTGKTITLDVEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV +PSLA LA+ +NCEKMICRKCYARLPPRA NCRKKKCGHTN LR KKKLK
Sbjct:   48 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLAVLARKYNCEKMICRKCYARLPPRAVNCRKKKCGHTNQLRPKKKLK 175          
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|672828191|gb|KFH73080.1| (ubiquitin-60S ribosomal protein L40 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 241.891 bits (616), Expect = 1.476e-79
Identity = 115/128 (89.84%), Postives = 121/128 (94.53%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
            MQIFVKTLTGKTITL+VE SDTI+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA  FNC+KMICRKCYARLPPRA NCRKKKCGH+N LRIKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKKKCGHSNQLRIKKKLK 128          
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|545712330|ref|XP_005708470.1| (ubiquitin [Galdieria sulphuraria] >gi|452824950|gb|EME31950.1| ubiquitin [Galdieria sulphuraria])

HSP 1 Score: 241.506 bits (615), Expect = 2.264e-79
Identity = 114/128 (89.06%), Postives = 122/128 (95.31%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
            MQIFVKTLTGKTITL+VEPSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +P+LAALA+ +NC+KMICRKCYARLP RA NCRKKKCGHTN LR+KKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPTLAALARKYNCDKMICRKCYARLPARAHNCRKKKCGHTNELRVKKKLK 128          
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|397592983|gb|EJK55830.1| (hypothetical protein THAOC_24391 [Thalassiosira oceanica])

HSP 1 Score: 243.047 bits (619), Expect = 3.480e-79
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
            M IFVKTLTGKTITLDVEPSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLA LAK FNCEK ICRKCYARLPP+A NCRKKKCGH++ LR KKKLK
Sbjct:   57 MAIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLALLAKKFNCEKQICRKCYARLPPKATNCRKKKCGHSSQLRPKKKLK 184          
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|597583033|ref|XP_007294573.1| (ubiquitin [Marssonina brunnea f. sp. 'multigermtubi' MB_m1] >gi|406862417|gb|EKD15468.1| ubiquitin [Marssonina brunnea f. sp. 'multigermtubi' MB_m1])

HSP 1 Score: 240.736 bits (613), Expect = 9.108e-79
Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA  FNC+KMICRKCYARLPPRA NCRKKKCGHTN LR KKKLK
Sbjct:   23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 150          
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|301108213|ref|XP_002903188.1| (ubiquitin-ribosomal fusion protein, putative [Phytophthora infestans T30-4] >gi|675168847|ref|XP_008893308.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica INRA-310] >gi|262097560|gb|EEY55612.1| ubiquitin-ribosomal fusion protein, putative [Phytophthora infestans T30-4] >gi|566022186|gb|ETI45097.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica P1569] >gi|567959503|gb|ETK85074.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica] >gi|567988217|gb|ETL38498.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica] >gi|568017449|gb|ETL91626.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica] >gi|568047842|gb|ETM44910.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica] >gi|568106893|gb|ETN21523.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica INRA-310] >gi|570325762|gb|ETO73710.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica P1976] >gi|570949659|gb|ETP14916.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica CJ01A1] >gi|570983086|gb|ETP42981.1| ubiquitin-60S ribosomal protein L40 [Phytophthora parasitica P10297] >gi|970657972|gb|KUF95792.1| hypothetical protein AM588_10006882 [Phytophthora nicotianae] >gi|1214699530|gb|OWZ12310.1| Ubiquitin-ribosomal fusion protein [Phytophthora megakarya])

HSP 1 Score: 239.58 bits (610), Expect = 1.050e-78
Identity = 115/128 (89.84%), Postives = 120/128 (93.75%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  +P+LAALAK  NCEK ICR CYARLPPRA NCRKKKCGH+N LRIKKKLK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAIEPTLAALAKKTNCEKQICRICYARLPPRATNCRKKKCGHSNQLRIKKKLK 128          
BLAST of EWM28590.1 vs. NCBI_GenBank
Match: gi|672826748|gb|KFH71638.1| (ubiquitin-60S ribosomal protein L40 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 239.58 bits (610), Expect = 1.224e-78
Identity = 114/128 (89.06%), Postives = 120/128 (93.75%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYDPSLAALAKTFNCEKMICRKCYARLPPRAKNCRKKKCGHTNHLRIKKKLK 128
            MQIFVKTLTGKTITL+VE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+ +PSL ALA  FNC+KMICRKCYARLPPRA NCRKKKCGH+N LRIKKKLK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKKKCGHSNQLRIKKKLK 128          
The following BLAST results are available for this feature:
BLAST of EWM28590.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111008|gb|EWM28590.1|9.604e-140100.00ubiquitin [Nannochloropsis gaditana][more]
gi|219123892|ref|XP_002182250.1|2.948e-8091.41ubiquitin extension protein 1/2 [Phaeodactylum tri... [more]
gi|1210517732|dbj|GAX23428.1|4.096e-8090.63large subunit ribosomal protein L40e [Fistulifera ... [more]
gi|873236768|emb|CEL98446.1|5.318e-8092.19unnamed protein product [Vitrella brassicaformis C... [more]
gi|672828191|gb|KFH73080.1|1.476e-7989.84ubiquitin-60S ribosomal protein L40 [Mortierella v... [more]
gi|545712330|ref|XP_005708470.1|2.264e-7989.06ubiquitin [Galdieria sulphuraria] >gi|452824950|gb... [more]
gi|397592983|gb|EJK55830.1|3.480e-7990.63hypothetical protein THAOC_24391 [Thalassiosira oc... [more]
gi|597583033|ref|XP_007294573.1|9.108e-7989.06ubiquitin [Marssonina brunnea f. sp. 'multigermtub... [more]
gi|301108213|ref|XP_002903188.1|1.050e-7889.84ubiquitin-ribosomal fusion protein, putative [Phyt... [more]
gi|672826748|gb|KFH71638.1|1.224e-7889.06ubiquitin-60S ribosomal protein L40 [Mortierella v... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2075rna2075Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications