EWM28604.1, cds2065 (CDS) Nannochloropsis gaditana

Overview
NameEWM28604.1
Unique Namecds2065
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:825293..827371 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28604.1
Productdna-directed rna polymerase iii subunit rpc3
Orig transcript idgnl|cribi|Naga_100009g89.647.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:825293..827371 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR013197RNA_pol_III_RPC82-rel_HTH
Homology
BLAST of EWM28604.1 vs. NCBI_GenBank
Match: gi|585111022|gb|EWM28604.1| (dna-directed rna polymerase iii subunit rpc3 [Nannochloropsis gaditana])

HSP 1 Score: 1416.36 bits (3665), Expect = 0.000e+0
Identity = 692/692 (100.00%), Postives = 692/692 (100.00%), Query Frame = 0
Query:    1 MVVSPHPGGVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEIWRDSDNRNGNLHKLGLIKEALVILLQHNLLVVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSGDGEAGSGATACADASVDVEDLVRKMILEHYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSSRVQLPPNVTVKMYLEVLQNDPVQIVDREGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692
            MVVSPHPGGVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEIWRDSDNRNGNLHKLGLIKEALVILLQHNLLVVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSGDGEAGSGATACADASVDVEDLVRKMILEHYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSSRVQLPPNVTVKMYLEVLQNDPVQIVDREGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF
Sbjct:    1 MVVSPHPGGVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEIWRDSDNRNGNLHKLGLIKEALVILLQHNLLVVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSGDGEAGSGATACADASVDVEDLVRKMILEHYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSSRVQLPPNVTVKMYLEVLQNDPVQIVDREGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692          
BLAST of EWM28604.1 vs. NCBI_GenBank
Match: gi|675201799|ref|XP_008909784.1| (hypothetical protein PPTG_14610 [Phytophthora parasitica INRA-310] >gi|566017463|gb|ETI40374.1| hypothetical protein F443_14215 [Phytophthora parasitica P1569] >gi|567983514|gb|ETL33904.1| hypothetical protein L916_13752 [Phytophthora parasitica] >gi|568043063|gb|ETM40367.1| hypothetical protein L914_13664 [Phytophthora parasitica] >gi|568090010|gb|ETN04847.1| hypothetical protein PPTG_14610 [Phytophthora parasitica INRA-310] >gi|570321138|gb|ETO69086.1| hypothetical protein F444_14234 [Phytophthora parasitica P1976] >gi|570944943|gb|ETP10200.1| hypothetical protein F441_14110 [Phytophthora parasitica CJ01A1] >gi|570976482|gb|ETP38287.1| hypothetical protein F442_14057 [Phytophthora parasitica P10297])

HSP 1 Score: 241.506 bits (615), Expect = 9.730e-67
Identity = 215/718 (29.94%), Postives = 323/718 (44.99%), Query Frame = 0
Query:    9 GVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEI---WRDSDNRNGNLHKLGLIKEALVILLQHNLL---VVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSGDGEAGSGATACADASVD---VEDLVRKMILE----HYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGEL----SSRVQLPPNVTVKMYLEVLQNDPVQIVDREGTATDV-----------------YCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692
             V +   Q  L L+I+ E FG V +++   +LR     LAEI    +     + +   +  IK AL+ LLQHN+L    VA P       +   P + Y +++     RLRFPKF+  A++ FG  G+  +E V+  GR+ + + L  +       YN+A      Q L    DGE  + A     +  +      LVR+  +E     Y+ RV PLDL    P+  T    A+  RG      K + S + SK A   A    G  G    GK  DE      G+         AP   SG   PV   + + A +  ++     E         +         KK   S  A    RG   G+G  T  G+  G                 ++  DG      E SL          +WR GV Q  RDLRH  C+RF  + +N  A  +V A+LQHS P ER+     P S P+S  +L    S +  LPP       L +L    V   D+ G    V                 Y V + +I+E L+Q T H+ I+++Y        G  +ARI R+L++K+ L+ + + ELA++   + R RLY +Y D LL +QEIP+RADH+P  TF+ W+ ++ Q+   +T+R+      LR RR+ E +E ++L+A  E + +  +   FD+L+ +LDRLD+A+ +LD  LML+  F
Sbjct:    8 AVFATRSQRTLVLSIVREDFGDVAENVAEALLRSEGMRLAEIAHKLQRQTTASSSAPSVHEIKCALLKLLQHNVLDVTPVATP-------RGGSPAVAYNINVQEALYRLRFPKFIELAKETFGLEGEVVMEEVLVQGRVRMDQSLETMA------YNLAEQRRQEQKLKTQEDGEQATAAEEEEISEEELDECRHLVRETFVEMAKKRYISRVHPLDLKVAEPEE-TPDFPASIMRGQ----DKGSTSNLNSKSAVATAANGAG-NGSNANGKAADEDGITVRGKKR------KAPSPPSGNTVPVELQMMLDADEAARKEKDDSEAEWEPSSASSSTSSRGSKRKK--NSKRAKLPTRGTSSGDG--TTGGETSG-----------------EDAPDGSGAHTDERSL----------VWRFGVTQLLRDLRHKACIRFATENINAVAGVIVTAMLQHSAPREREKD--EPTSAPVSARDLFNMESVKNALPPEANNPWRL-LLNYIMVMCRDKSGMVMKVAQEAFDPTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKY--------GVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 658          
BLAST of EWM28604.1 vs. NCBI_GenBank
Match: gi|568013000|gb|ETL87177.1| (hypothetical protein L917_13558 [Phytophthora parasitica])

HSP 1 Score: 241.121 bits (614), Expect = 1.420e-66
Identity = 215/718 (29.94%), Postives = 323/718 (44.99%), Query Frame = 0
Query:    9 GVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEI---WRDSDNRNGNLHKLGLIKEALVILLQHNLL---VVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSGDGEAGSGATACADASVD---VEDLVRKMILE----HYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGEL----SSRVQLPPNVTVKMYLEVLQNDPVQIVDREGTATDV-----------------YCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692
             V +   Q  L L+I+ E FG V +++   +LR     LAEI    +     + +   +  IK AL+ LLQHN+L    VA P       +   P + Y +++     RLRFPKF+  A++ FG  G+  +E V+  GR+ + + L  +       YN+A      Q L    DGE  + A     +  +      LVR+  +E     Y+ RV PLDL    P+  T    A+  RG      K + S + SK A   A    G  G    GK  DE      G+         AP   SG   PV   + + A +  ++     E         +         KK   S  A    RG   G+G  T  G+  G                 ++  DG      E SL          +WR GV Q  RDLRH  C+RF  + +N  A  +V A+LQHS P ER+     P S P+S  +L    S +  LPP       L +L    V   D+ G    V                 Y V + +I+E L+Q T H+ I+++Y        G  +ARI R+L++K+ L+ + + ELA++   + R RLY +Y D LL +QEIP+RADH+P  TF+ W+ ++ Q+   +T+R+      LR RR+ E +E ++L+A  E + +  +   FD+L+ +LDRLD+A+ +LD  LML+  F
Sbjct:    8 AVFATRSQRTLVLSIVREDFGDVAENVAEALLRSEGMRLAEIAHKLQRQTTASSSAPSVHEIKCALLKLLQHNVLDVTPVATP-------RGGSPAVAYNINVQEALYRLRFPKFIELAKETFGLEGEVVMEEVLVQGRVRMDQSLETMA------YNLAEQRRQEQKLKTQEDGEQATAAEEEEISEEELDECRHLVRETFVEMAKKRYISRVHPLDLKVAEPEE-TPDFPASIMRGQ----DKGSISNLNSKSAVATAANGAG-NGSNANGKAADEDGITVRGKKR------KAPSPPSGNTVPVELQMMLDADEAARKEKDDSEAEWEPSSASSSTSSRGSKRKK--NSKRAKLPTRGTSSGDG--TTGGETSG-----------------EDAPDGSGAHTDERSL----------VWRFGVTQLLRDLRHKACIRFATENINAVAGVIVTAMLQHSAPREREKD--EPTSAPVSARDLFNMESVKNALPPEANNPWRL-LLNYIMVMCRDKSGMVMKVAQEAFDPTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKY--------GVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 658          
BLAST of EWM28604.1 vs. NCBI_GenBank
Match: gi|567954846|gb|ETK80479.1| (hypothetical protein L915_13855 [Phytophthora parasitica])

HSP 1 Score: 240.736 bits (613), Expect = 2.438e-66
Identity = 214/718 (29.81%), Postives = 321/718 (44.71%), Query Frame = 0
Query:    9 GVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEI---WRDSDNRNGNLHKLGLIKEALVILLQHNLL---VVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSGDG---EAGSGATACADASVDVEDLVRKMILE----HYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGEL----SSRVQLPPNVTVKMYLEVLQNDPVQIVDREGTATDV-----------------YCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692
             V +   Q  L L+I+ E FG V +++   +LR     LAEI    +     + +   +  IK AL+ LLQHN+L    VA P       +   P + Y +++     RLRFPKF+  A++ FG  G+  +E V+  GR+ + + L  +       YN+A      Q L    DG    A        +   +   LVR+  +E     Y+ RV PLDL    P+  T    A+  RG      K + S + SK A   A    G  G    GK  DE      G+         AP   SG   PV   + + A +  ++     E         +         KK   S  A    RG     G+GT  G+  G                 ++  DG      E SL          +WR GV Q  RDLRH  C+RF  + +N  A  +V A+LQHS P ER+     P S P+S  +L    S +  LPP       L +L    V   D+ G    V                 Y V + +I+E L+Q T H+ I+++Y        G  +ARI R+L++K+ L+ + + ELA++   + R RLY +Y D LL +QEIP+RADH+P  TF+ W+ ++ Q+   +T+R+      LR RR+ E +E ++L+A  E + +  +   FD+L+ +LDRLD+A+ +LD  LML+  F
Sbjct:    8 AVFATRSQRTLVLSIVREDFGDVAENVAEALLRSEGMRLAEIAHKLQRQTTASSSAPSVHEIKCALLKLLQHNVLDVTPVATP-------RGGSPAVAYNINVQEALYRLRFPKFIELAKETFGLEGEVVMEEVLVQGRVRMDQSLETMA------YNLAEQRRQEQKLKTQEDGEQATAAEEEEISEEELDECRHLVRETFVEMAKKRYISRVHPLDLKVAEPEE-TPDFPASIMRGQ----DKGSTSNLNSKSAVATAANGAG-NGSNANGKAADEDGITVRGKKR------KAPSPPSGNTVPVELQMMLDADEAARKEKDDSEAEWEPSSASSSTSSRGSKRKK--NSKRAKLPTRGTSS--GDGTTGGETSG-----------------EDAPDGFGAHTDERSL----------VWRFGVTQLLRDLRHKACIRFATENINAVAGVIVTAMLQHSAPREREKD--EPTSAPVSARDLFNMESVKNALPPEANNPWRL-LLNYIMVMCRDKSGMVMKVAQEAFDPTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKY--------GVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 658          
BLAST of EWM28604.1 vs. NCBI_GenBank
Match: gi|970635853|gb|KUF80646.1| (DNA-directed RNA polymerase III subunit RPC3 [Phytophthora nicotianae])

HSP 1 Score: 238.424 bits (607), Expect = 1.827e-65
Identity = 216/731 (29.55%), Postives = 329/731 (45.01%), Query Frame = 0
Query:    9 GVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEIWRD------SDNRNGNLHKLGL--------IKEALVILLQHNLL---VVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSGDGEAGSGATACADASVD---VEDLVRKMILE----HYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGEL----SSRVQLPPNVTVK-----------------MYLEVLQN--DPVQIVDREGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692
             V +   Q  L L+I+ E FG V +++   +LR     LAEI         + +   ++H++ +        IK AL+ LLQHN+L    VA P       +   P + Y +++     RLRFPKF+  A++ FG  G+  +E V+  GR+ + + L  +       YN+A      Q L    DGE  + A     +  +      LVR+  +E     Y+ RV PLDL    P+  T    A+  RG      K + S + SK A   A    G  G    GK  DE      G+          P   SG   PV   + + A +  ++     E         +         KK   S  A    RG   G+G  T  G+  G                 ++  DG      E SL          +WR GV Q  RDLRH  C+RF  + +N  A  +V A+LQHS P ER+     P S P+S  +L    S +  LPP                      M ++V Q   DP+Q    +G     Y V + +I+E L+Q T H+ I+++Y        G  +ARI R+L++K+ L+ + + ELA++   + R RLY +Y D LL +QEIP+RADH+P  TF+ W+ ++ Q+   +T+R+      LR RR+ E +E ++L+A  E + +  +   FD+L+ +LDRLD+A+ +LD  LML+  F
Sbjct:    8 AVFATRSQRTLVLSIVREDFGDVAENVAEALLRSEGMRLAEIAHKLQRQTTASSSAPSVHEILICCYAAGMKIKCALLKLLQHNVLDVTPVATP-------RGGSPAVAYNINVQEALYRLRFPKFIELAKETFGLEGEVVMEEVLVQGRVRMDQSLETMA------YNLAEQRRQEQKLKTQEDGEQATAAEEEEISEEELDECRHLVRETFVEMAKKRYISRVHPLDLKVAEPEE-TPDFPASIMRGQ----DKGSTSNLNSKSAVATAANGAG-NGSNANGKAADEDGITVRGKKR------KXPSPPSGNTVPVELQMMLDADEAARKEKDDSEAEWEPSSASSSTSSRGSKRKK--NSKRAKLPTRGTSSGDG--TTGGETSG-----------------EDAPDGSGAHTDERSL----------VWRFGVTQLLRDLRHKACIRFATENINAVAGVIVTAMLQHSAPREREKD--EPTSAPVSARDLFNMESVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPIQARAGDGGQ---YVVHMQKIVEFLQQATTHAYIQDKY--------GVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 669          
BLAST of EWM28604.1 vs. NCBI_GenBank
Match: gi|953491912|emb|CEG45489.1| (dna-directed rna polymerase iii subunit rpc3 [Plasmopara halstedii])

HSP 1 Score: 230.72 bits (587), Expect = 6.257e-63
Identity = 197/727 (27.10%), Postives = 331/727 (45.53%), Query Frame = 0
Query:    2 VVSPHPGGVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEI----WRDSDNRNGNLHKLGLIKEALVILLQHNLLVVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGS--GDGEAGSGATACADASVDVEDLVRKMILEHYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIG---RSLGAEEGVA--------APYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERD---GTVAPPRSQPLSLGELSSRVQLP-----PNVTVKMYLEVLQNDPVQIVDR---------EGTATD--VYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692
            ++S +    +S +Q+  L ++I+ E FG V + +   +LR     LAEI     R++   +  L  +  IK AL+ LLQHN+L V     D        P + Y+++++    RLRFPKF+  A++ FG  G+  +E ++  GR+ + + +  +       YN+A      Q +     G  E   G     +    V D+  +M  + Y+ RV PL+L     + +  V +                         T  G+     G L      +E+  L  G   +S G+ +G++        +P + SG   PV   + + A +  +R     E         +  G     SK+            G  GGE  G +  +  G                 DE +                     ++WR G+ Q  RDLRH TC+RF  + +N  A  +V A+LQHS P ER+    T AP  ++ L   E S +  LP     P   +  Y+ V+  D   ++ +         +  A+D   Y V + +I+E L+Q T+H+ I+++Y        G  +ARI R+L++K+ L+ + + ELA++   + R RLY +Y D L+ +QEIP+RADH+P  TF+ W+ ++ Q+   +T+R+      LR RR+ E +E ++L+A  E + + ++   FD+L+ +LDRLD+A+ +LD  LMLF  F
Sbjct:    1 MISENKAAFASHSQR-ALVMSIVREDFGDVAEKVAETLLRSEGLRLAEIVHKLQRETTTTSAVL-SMHEIKCALLKLLQHNVLDVKPVRGD-------TPAVSYKINVEEALYRLRFPKFIELAKETFGVEGEVVMEELLVQGRMRMDQSIETMA------YNLAEARRQEQKVQAQEGGTVEDEIGEDELDECRYLVRDVFVEMAKKRYISRVHPLELKLTEAEEVPVVSS-------------------------TSNGQDDSTTGILRATSNNNEM-HLNAGNTSKSTGSSDGISVRGKKRKVSP-LPSGNTIPVELQMMLDADEASRREKEDSEAEWTPSSASSSRGIKRKKSKRAKLPTRGASNKDGNTGGETSGEDAPEVSG--------------THTDETS---------------------LVWRFGMTQMLRDLRHKTCIRFASENINAVAGVIVEAMLQHSSPREREKDEATSAPVSARDLFNME-SVKKALPSESNNPWRLLLNYITVMCRDKSGMIMKVAQEAFDPTKARASDGGQYVVHMQKIVEFLQQATVHAYIQDKY--------GVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEALDIDKFDKLSRSLDRLDRAIIHLDGMLMLFRDF 641          
BLAST of EWM28604.1 vs. NCBI_GenBank
Match: gi|695391245|ref|XP_009519965.1| (hypothetical protein PHYSODRAFT_487168, partial [Phytophthora sojae] >gi|348684862|gb|EGZ24677.1| hypothetical protein PHYSODRAFT_487168, partial [Phytophthora sojae])

HSP 1 Score: 212.616 bits (540), Expect = 1.499e-56
Identity = 194/659 (29.44%), Postives = 295/659 (44.76%), Query Frame = 0
Query:   67 IKEALVILLQHNLLVVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATV----ADHTQTLMGSGDGEAGSGATACADASVDVEDLVRKMILE----HYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSGGEGPVGGPLSI----LARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGEL----SSRVQLPPNVTVKMYLEVLQNDPVQIVDREGTATDV-----------------YCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692
            IK AL+ LLQHN+L V  P +     +   P + Y +++     RLRFPKF+  A++ FG  G+  +E ++  GR+ + + L  +       YN+A         T     +    A        +   +   LVR+  +E     Y+ RV PLDL    P+      A       + A S   + +  +  +  EAG      G    GK  DE      G+         AP  SSG   PV   + +     ARK         E   A+    +G G     +K+   S  A    RG   G+G  T  G+  G                 ++  DG      E SL          +WR GV Q  RDLRH  C+RF  + +N  A  +V A+LQHS P ER+     P S P+S  +L    S +  LPP       L +L    V   D+ G    V                 Y V + +I+E L+Q T H+ I+++Y        G  +ARI R+L++K+ L+ + + ELA++   + R RLY +Y D LL +QEIP+RADH+P  TF+ W+ ++ Q+   +T+R+      LR RR+ E +E ++L+A  E + +  +   FD+L+ +LDRLD+A+ +LD  LML+  F
Sbjct:    3 IKCALLKLLQHNVLDVT-PVAGA---RGGAPTVAYNINVQEALYRLRFPKFIELAKETFGVQGEVVMEEMLVQGRVRMDQSLETMA------YNLAEQRRQEQKQTAQEADAEQAAAAEDEEIGEEELDECRHLVRETFVEMAKKRYISRVHPLDLKVAEPEEAPEFPACIMRGHEKGATSNLNSKSAAAAASNAEAGSALSANGVNKNGKAADEDGITVRGKKR------KAPAPSSGNAIPVELQMMLDADEAARKEKDDSEAEWEPSSASSSTSSGRG-----NKRKKNSKRAKLPSRGTSSGDG--TTGGETSG-----------------EDAPDGSGAHTDERSL----------VWRFGVTQLLRDLRHKACIRFATENINAVAGVIVAAMLQHSSPREREKD--EPTSFPVSARDLFDMESVKKALPPEANNPWRL-LLNYIMVMCRDKSGMVMKVAQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKY--------GVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 600          
BLAST of EWM28604.1 vs. NCBI_GenBank
Match: gi|635366256|emb|CCI45447.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 174.481 bits (441), Expect = 9.786e-43
Identity = 158/622 (25.40%), Postives = 274/622 (44.05%), Query Frame = 0
Query:  102 QMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSGDGEAGSGATACADASVDVEDLVRKMILEHYLVRVLPLDLVTPSPDA--LTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIG-RSLGAEEGVAA-----PYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSS----RVQLPPNV--TVKMYLEVLQNDPVQIVDREGTATDV-----------------YCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692
            Q+D+  V  R+ FP+F+ +A++ FG+ G+  +E ++ +GR+ + + +  +       Y +A      +    S +  +        D    V     +M    Y+ RV P+ +V    ++  + S+    + RG+ A                        +Q G       + ++  EI   SLG E G+A        VS G   PV   + + +++       ++E  + A  D   N F    S+         +  R P      GT+  +A  +       SD  G+   + E D K+ V                 WR G +Q  R+LRH   +RF  + VN  A  +V A+L +S+  ER+     P S P++  E+      +  LP  +  T ++ L  L    V + D+ G  T V                 Y V +  I + L+Q T+H+ I++++        G ++ARI R++L+K+ L+ + + ELA++ L E R RLY +Y D L+ +QEIP+R+DH+P  T Y W+ N   +   + +R+      LR RR    KE ++L+A    + ++ +   FD+L+  LDRLD+++  LD  LML+  F
Sbjct:  119 QIDISEVLYRIHFPRFINQAKKKFGDAGEIIMEEILVNGRIRMDESVEVMA------YRLAECRQKKE----SNEDASSIPERELRDCREAVNFKFVEMAKNRYISRVHPVKMVLNQQESKSIDSLAEKPSNRGNHA------------------------KQVG------SNNMIRPEISTESLGDEHGIAVRVKKEKKVSRGSNLPVELMMLLESQE-----MSMNEAAEEAEYDVASNPFAKKRSR-------LSKRARLPK----HGTKPHEAHTE-------SDTNGLQSTNTEMDEKSLV-----------------WRCGTDQLLRELRHDAFVRFAMENVNHVAGVIVSAMLSYSMSHERESN--EPTSFPMTAREIYKVDEVKQALPKEIKDTWRLLLNYL---AVMVRDKSGMLTRVAAEKADATTTQGGDGGQYVVHMKNITDYLKQATMHAYIQDKF--------GVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSVNTFHIERVIRERVQDSICKLRSRRDFIAKENKELIARSSQLVEENDLEKFDKLSQGLDRLDRSILQLDENLMLYRDF 647          
BLAST of EWM28604.1 vs. NCBI_GenBank
Match: gi|635366255|emb|CCI45446.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 174.096 bits (440), Expect = 1.053e-42
Identity = 158/623 (25.36%), Postives = 274/623 (43.98%), Query Frame = 0
Query:  101 YQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSGDGEAGSGATACADASVDVEDLVRKMILEHYLVRVLPLDLVTPSPDA--LTSVGAAAAARGSRAAASKAAASAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIG-RSLGAEEGVAA-----PYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVGGEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSS----RVQLPPNV--TVKMYLEVLQNDPVQIVDREGTATDV-----------------YCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692
            Y +D+  V  R+ FP+F+ +A++ FG+ G+  +E ++ +GR+ + + +  +       Y +A      +    S +  +        D    V     +M    Y+ RV P+ +V    ++  + S+    + RG+ A                        +Q G       + ++  EI   SLG E G+A        VS G   PV   + + +++       ++E  + A  D   N F    S+         +  R P      GT+  +A  +       SD  G+   + E D K+ V                 WR G +Q  R+LRH   +RF  + VN  A  +V A+L +S+  ER+     P S P++  E+      +  LP  +  T ++ L  L    V + D+ G  T V                 Y V +  I + L+Q T+H+ I++++        G ++ARI R++L+K+ L+ + + ELA++ L E R RLY +Y D L+ +QEIP+R+DH+P  T Y W+ N   +   + +R+      LR RR    KE ++L+A    + ++ +   FD+L+  LDRLD+++  LD  LML+  F
Sbjct:   98 YYIDISEVLYRIHFPRFINQAKKKFGDAGEIIMEEILVNGRIRMDESVEVMA------YRLAECRQKKE----SNEDASSIPERELRDCREAVNFKFVEMAKNRYISRVHPVKMVLNQQESKSIDSLAEKPSNRGNHA------------------------KQVG------SNNMIRPEISTESLGDEHGIAVRVKKEKKVSRGSNLPVELMMLLESQE-----MSMNEAAEEAEYDVASNPFAKKRSR-------LSKRARLPK----HGTKPHEAHTE-------SDTNGLQSTNTEMDEKSLV-----------------WRCGTDQLLRELRHDAFVRFAMENVNHVAGVIVSAMLSYSMSHERESN--EPTSFPMTAREIYKVDEVKQALPKEIKDTWRLLLNYL---AVMVRDKSGMLTRVAAEKADATTTQGGDGGQYVVHMKNITDYLKQATMHAYIQDKF--------GVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSVNTFHIERVIRERVQDSICKLRSRRDFIAKENKELIARSSQLVEENDLEKFDKLSQGLDRLDRSILQLDENLMLYRDF 627          
BLAST of EWM28604.1 vs. NCBI_GenBank
Match: gi|298707347|emb|CBJ29991.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 159.844 bits (403), Expect = 4.765e-40
Identity = 101/298 (33.89%), Postives = 152/298 (51.01%), Query Frame = 0
Query:  413 DEVLWRVGVEQFHRDLRHVTCLRFVRQKV--NTTAESLVRAILQHSLPLER--DGTVAPPRS---------QPLSLGELSSRVQLPPNVTVKMYLEVLQNDPVQIVDR---EGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIR--DDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692
            D VLW++G ++FHRD R++  L  V+ +   +  A  +V+ +L +S P ER  D  V+   S         +      L+    +P       ++  L  D   +V +     T    Y V + ++++ +R   +    R+RY        G   ARI  +LL  KYLD QQV E+AM+   + RERLYR+  D +++VQE+P+RAD +PN TFYLWT    QV + + + +YK  LN+RLRR+      + L  +    R  +D E    DQ+  +LDRLD AL  LD  LM F  F
Sbjct:   35 DSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASISARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRY--------GKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKALFIHDAAARLSNDAERERLDQVRRSLDRLDTALLRLDENLMFFNTF 324          
The following BLAST results are available for this feature:
BLAST of EWM28604.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111022|gb|EWM28604.1|0.000e+0100.00dna-directed rna polymerase iii subunit rpc3 [Nann... [more]
gi|675201799|ref|XP_008909784.1|9.730e-6729.94hypothetical protein PPTG_14610 [Phytophthora para... [more]
gi|568013000|gb|ETL87177.1|1.420e-6629.94hypothetical protein L917_13558 [Phytophthora para... [more]
gi|567954846|gb|ETK80479.1|2.438e-6629.81hypothetical protein L915_13855 [Phytophthora para... [more]
gi|970635853|gb|KUF80646.1|1.827e-6529.55DNA-directed RNA polymerase III subunit RPC3 [Phyt... [more]
gi|953491912|emb|CEG45489.1|6.257e-6327.10dna-directed rna polymerase iii subunit rpc3 [Plas... [more]
gi|695391245|ref|XP_009519965.1|1.499e-5629.44hypothetical protein PHYSODRAFT_487168, partial [P... [more]
gi|635366256|emb|CCI45447.1|9.786e-4325.40unnamed protein product [Albugo candida][more]
gi|635366255|emb|CCI45446.1|1.053e-4225.36unnamed protein product [Albugo candida][more]
gi|298707347|emb|CBJ29991.1|4.765e-4033.89conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2073rna2073Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications