rna2073, rna2073 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2073
Unique Name	rna2073
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	824
Alignment location	CM002458.1:825058..827694 -

Link to JBrowse

Properties


Property Name	Value
Product	dna-directed rna polymerase iii subunit rpc3
Orig transcript id	gnl\|cribi\|Naga_100009g89.647.mrna
Orig protein id	gnl\|cribi\|Naga_100009g89.647
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:825058..827694 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100009g89	gene1983	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28604.1	cds2065	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2073	rna2073-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:825058..827694-
coding sequence from alignment at CM002458.1:825058..827694-

mRNA sequence

>rna2073 ID=rna2073|Name=rna2073|organism=Nannochloropsis gaditana|type=mRNA|length=824bp
CGGGTGGGTCCGTATGATGCTTTACAAACCGTCGAGTGCTACATCCGAGA
CGCCCTGGACCGTACGACTAAGATCCTCGCATTGCTTTTTGATTGGGGTA
CACGCTCGCACGTGACAGTCGCCATGAAAATTAGGCTGGCGTCTATGTGC
GTTGGCATGTCGAAAATTGTTTTAAGCCGCATGAAATGACGAATTGTTTC
GAATAAATTCGGAGCCCTTCATTGACACCCTTTCATACACATCCTGTCCA
TTTCCTCATCACTGTCATCCTCAACACAAGTGGGGTGACAAGTCATGGAG
CGAGCCTCTCCTCTCCTCGCACGTTTTGGTGGGCATCTTCGCAAGCACTC
TAACAGGGCCAAGAAACGCATCTTCGGCAGTCGCACACGATATGAGGATG
TGATAAGACCTGCCAGGGAGCAGGCTGCGGCTGAACCGCCTGCGCCCTTG
AAATACCCACCAACATATCAGCCCTCACGTGTTCTCCCCAACGGATGGTC
CGCTCCACCCGATCCTGCCACCGTTGGCTTGCCAAAAACGTCACTTCCCT
TCCAAGTTGAGCGGACCGACAAAGGGCGGTGGCTGCCAGTGTACACGGAC
GTACGCAAAGGTCGCACGCAATTGATCACGCTGGTGCGGAAGGTGTCAGG
AGATTTGGAGGAGATGCGAGGGGAGATGTCCAAAGTTTGTGCAAATCAAG
AAGTGAGAATACGCACGGGCCCCCGTCTGGAAGTAAAGGGGCGCTACACC
GCGCAGTTGCGGCAGTGGTTGGCAGGACTGGGGTTCTAAAGAAAAAACTA
AGAACAGCGACAAATAGCATGTCC

protein sequence of rna2073

>rna2073-protein ID=rna2073-protein|Name=rna2073|organism=Nannochloropsis gaditana|type=polypeptide|length=692bp
MVVSPHPGGVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEI
WRDSDNRNGNLHKLGLIKEALVILLQHNLLVVAMPTSDEMLRKHTKPLIY
YQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQ
VGESYKARYNIATVADHTQTLMGSGDGEAGSGATACADASVDVEDLVRKM
ILEHYLVRVLPLDLVTPSPDALTSVGAAAAARGSRAAASKAAASAVLSKG
AETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSGGEG
PVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEA
WEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVG
GEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVR
AILQHSLPLERDGTVAPPRSQPLSLGELSSRVQLPPNVTVKMYLEVLQND
PVQIVDREGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDR
NARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPR
RADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLL
ANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF

mRNA from alignment at CM002458.1:825058..827694-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2073 ID=rna2073|Name=rna2073|organism=Nannochloropsis gaditana|type=mRNA|length=2637bp|location=Sequence derived from alignment at CM002458.1:825058..827694- (Nannochloropsis gaditana)
CCAAGTGAACCAGGGTTGTCAGAAAGCGAGTCTCCTGTGTGGTGTGTTCA
CAGGTGATGGATGAGAATCTGGTTTATCATGTTGCGTCAATTGAGGAAGG
ATGCAACTAAGCTACTCTTTGCCCTCACTGGTGTCGCTGAGGAAAGGCTG
CGGCCGCCCCCTCCTTGACCTCCTACTACTACCTCCTCGACAATAACTTA
TCCTCAAGACCTTCAGTTTCCCTCTTCACAAACCGAAGCAGAAATCGTTT
ATTCACGACGGGTCCCAGTCTGTGCGAAAATAAGCTCTCAAATTCAAGGC
AGTGACGCTACAATCCTCCCCCTATGGTCGTCTCCCCCCACCCGGGGGGA
GTTTCCTCCGCCAATCAACAATATAAGCTGGCCCTTAACATTTTGAACGA
GCACTTCGGTCCTGTCGTGCAAGACATTGGGTCATACATTCTGCGTCGGG
GGCGCTGCACATTGGCGGAGATATGGCGGGACTCTGACAACAGGAATGGA
AACCTCCACAAGCTTGGCCTCATTAAGGAGGCGCTGGTTATCCTCCTACA
GCACAACCTTCTGGTCGTTGCGATGCCCACTTCTGATGAGATGCTACGAA
AACATACCAAACCTCTGATTTACTATCAAATGGATTTGGATGCAGTCACC
ATGCGCCTCCGCTTTCCCAAATTTTTGCTTCGAGCGCGGCAGCTGTTTGG
AGAGGGTGGTCAGGCAGCGGTGGAGGCTGTCATGCGACACGGGCGTCTCC
CGCTCTCTAAAATTTTGGCGCAGGTGGGAGAGTCGTATAAAGCACGATAT
AACATTGCCACGGTAGCTGATCACACACAGACACTCATGGGTTCCGGAGA
TGGGGAAGCAGGGTCTGGCGCCACCGCATGCGCTGACGCAAGTGTTGATG
TGGAAGACCTGGTCCGGAAGATGATTTTGGAGCATTACCTGGTGCGTGTC
TTGCCCTTGGATCTGGTAACACCATCTCCGGATGCTCTTACAAGCGTTGG
CGCCGCGGCGGCTGCCCGAGGGTCTCGCGCCGCCGCCTCCAAGGCAGCGG
CCAGCGCGGTTCTCTCAAAAGGAGCAGAGACCGAGGCCGGGAAGAAGAGG
GGGCGACAGGGTGGCTTAGGAGGGGGCAAGGAGGGTGATGAGATAGTATC
CCTTGAGATCGGGAGGTCGCTTGGCGCGGAGGAGGGTGTTGCAGCCCCTT
ATGTCAGTAGCGGAGGGGAGGGGCCAGTAGGTGGCCCCCTGAGCATCCTT
GCGAGGAAACGCTTCAAACGTCGCAGTGGGGTAGATGAAGGCCATAAAGC
TGCGGGAATAGATGAGAATGGGAATGGTTTCCACCCGGGGCCGAGCAAGA
AGGTAGTCGGGAGCGGAGAGGCTTGGGAAGGGGTCCGGGGGCCAGGGGGT
GGCGAGGGGGAGGGGACGGAAACGGGGCAGGCGGAGGGGAAGTTCCCGAC
AGGAAGACGAAGAAGCGACCTGGAAGGCATCGTGGAGGAGGACGAGGAGG
CAGACGGGAAGACGTGGGTAGGCGGGGAGGAGTCGCTGGCCGAATGGGTC
GGAGCAGGAGACGAGGTGCTCTGGCGGGTGGGGGTGGAGCAGTTCCATCG
AGACCTCCGGCACGTCACGTGCCTGCGCTTTGTCCGTCAGAAGGTGAACA
CCACGGCCGAGTCCTTGGTGCGCGCCATCCTCCAGCACAGCCTCCCCCTG
GAACGGGACGGCACGGTCGCGCCCCCCCGCTCGCAGCCTTTGAGCCTAGG
GGAGCTGAGTTCCAGAGTCCAGCTGCCTCCCAACGTGACGGTAAAGATGT
ATCTCGAGGTGTTGCAAAACGACCCTGTGCAGATTGTGGACCGGGAGGGG
ACGGCCACGGATGTGTACTGTGTCTGCCTGGGGCGCATCATAGAGAGCCT
GCGGCAACGGACGCTGCATAGTATCATCCGCGAGCGCTACACCACGGACT
CGAAAGCCTGTGACGGAGACCGCAATGCGCGCATCTGCCGGGTGCTCCTC
GACAAGAAGTACCTGGACCCGCAGCAAGTGAGCGAGCTGGCGATGATGTC
CCTGAGGGAGACGCGGGAGAGGCTCTACCGGATGTACGCCGACTTGCTGC
TGACCGTGCAGGAGATTCCCCGACGGGCCGACCACCACCCGAACCAGACC
TTCTACTTGTGGACCTTCAACATGCAGCAGGTGGTGGAGGAGCTGACCCA
GCGCATGTACAAAGGCGCGTTGAACTTGCGCTTGCGTCGACAGAAAGAAA
CAAAGGAGAAGCGAGACCTGTTGGCGAACAAGGAGAACATTCGGGATGAC
GTGGAAGCGGCCCACTTTGATCAGCTGACCACGACCTTGGACCGCCTCGA
CCAAGCCCTGGAGAACCTGGACGCGACCCTCATGCTCTTCACTGTCTTCT
GACGCGACGGGGCGTGGGGATCGGACAACATGGAGGGGTGGAGAGAGACA
TGCAGGAGGAATGGACATATGCAACAATTAAGAATAGAGAAAATCGAGTG
AACATAGTCATGCAGCGCGAAGGCAACGTGCGAGGACAAGAGACTCGGGA
TCCAGGGCCCGAGTTCGTCACGCGTGTATCCAGAGACGCTTCGAAAATGT
GTGCTATGGATTGTGGACATGCTATTTGTCGCTGTTC

Coding sequence (CDS) from alignment at CM002458.1:825058..827694-

>rna2073 ID=rna2073|Name=rna2073|organism=Nannochloropsis gaditana|type=CDS|length=2079bp|location=Sequence derived from alignment at CM002458.1:825058..827694- (Nannochloropsis gaditana)
ATGGTCGTCTCCCCCCACCCGGGGGGAGTTTCCTCCGCCAATCAACAATA
TAAGCTGGCCCTTAACATTTTGAACGAGCACTTCGGTCCTGTCGTGCAAG
ACATTGGGTCATACATTCTGCGTCGGGGGCGCTGCACATTGGCGGAGATA
TGGCGGGACTCTGACAACAGGAATGGAAACCTCCACAAGCTTGGCCTCAT
TAAGGAGGCGCTGGTTATCCTCCTACAGCACAACCTTCTGGTCGTTGCGA
TGCCCACTTCTGATGAGATGCTACGAAAACATACCAAACCTCTGATTTAC
TATCAAATGGATTTGGATGCAGTCACCATGCGCCTCCGCTTTCCCAAATT
TTTGCTTCGAGCGCGGCAGCTGTTTGGAGAGGGTGGTCAGGCAGCGGTGG
AGGCTGTCATGCGACACGGGCGTCTCCCGCTCTCTAAAATTTTGGCGCAG
GTGGGAGAGTCGTATAAAGCACGATATAACATTGCCACGGTAGCTGATCA
CACACAGACACTCATGGGTTCCGGAGATGGGGAAGCAGGGTCTGGCGCCA
CCGCATGCGCTGACGCAAGTGTTGATGTGGAAGACCTGGTCCGGAAGATG
ATTTTGGAGCATTACCTGGTGCGTGTCTTGCCCTTGGATCTGGTAACACC
ATCTCCGGATGCTCTTACAAGCGTTGGCGCCGCGGCGGCTGCCCGAGGGT
CTCGCGCCGCCGCCTCCAAGGCAGCGGCCAGCGCGGTTCTCTCAAAAGGA
GCAGAGACCGAGGCCGGGAAGAAGAGGGGGCGACAGGGTGGCTTAGGAGG
GGGCAAGGAGGGTGATGAGATAGTATCCCTTGAGATCGGGAGGTCGCTTG
GCGCGGAGGAGGGTGTTGCAGCCCCTTATGTCAGTAGCGGAGGGGAGGGG
CCAGTAGGTGGCCCCCTGAGCATCCTTGCGAGGAAACGCTTCAAACGTCG
CAGTGGGGTAGATGAAGGCCATAAAGCTGCGGGAATAGATGAGAATGGGA
ATGGTTTCCACCCGGGGCCGAGCAAGAAGGTAGTCGGGAGCGGAGAGGCT
TGGGAAGGGGTCCGGGGGCCAGGGGGTGGCGAGGGGGAGGGGACGGAAAC
GGGGCAGGCGGAGGGGAAGTTCCCGACAGGAAGACGAAGAAGCGACCTGG
AAGGCATCGTGGAGGAGGACGAGGAGGCAGACGGGAAGACGTGGGTAGGC
GGGGAGGAGTCGCTGGCCGAATGGGTCGGAGCAGGAGACGAGGTGCTCTG
GCGGGTGGGGGTGGAGCAGTTCCATCGAGACCTCCGGCACGTCACGTGCC
TGCGCTTTGTCCGTCAGAAGGTGAACACCACGGCCGAGTCCTTGGTGCGC
GCCATCCTCCAGCACAGCCTCCCCCTGGAACGGGACGGCACGGTCGCGCC
CCCCCGCTCGCAGCCTTTGAGCCTAGGGGAGCTGAGTTCCAGAGTCCAGC
TGCCTCCCAACGTGACGGTAAAGATGTATCTCGAGGTGTTGCAAAACGAC
CCTGTGCAGATTGTGGACCGGGAGGGGACGGCCACGGATGTGTACTGTGT
CTGCCTGGGGCGCATCATAGAGAGCCTGCGGCAACGGACGCTGCATAGTA
TCATCCGCGAGCGCTACACCACGGACTCGAAAGCCTGTGACGGAGACCGC
AATGCGCGCATCTGCCGGGTGCTCCTCGACAAGAAGTACCTGGACCCGCA
GCAAGTGAGCGAGCTGGCGATGATGTCCCTGAGGGAGACGCGGGAGAGGC
TCTACCGGATGTACGCCGACTTGCTGCTGACCGTGCAGGAGATTCCCCGA
CGGGCCGACCACCACCCGAACCAGACCTTCTACTTGTGGACCTTCAACAT
GCAGCAGGTGGTGGAGGAGCTGACCCAGCGCATGTACAAAGGCGCGTTGA
ACTTGCGCTTGCGTCGACAGAAAGAAACAAAGGAGAAGCGAGACCTGTTG
GCGAACAAGGAGAACATTCGGGATGACGTGGAAGCGGCCCACTTTGATCA
GCTGACCACGACCTTGGACCGCCTCGACCAAGCCCTGGAGAACCTGGACG
CGACCCTCATGCTCTTCACTGTCTTCTGA

Synonyms

Publications