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Properties
| Property Name | Value |
|---|
| Product | Transcription factor IIS |
| Orig transcript id | gnl|cribi|Naga_100009g96.570.mrna |
| Orig protein id | gnl|cribi|Naga_100009g96.570 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:810572..813597 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2067 ID=rna2067|Name=rna2067|organism=Nannochloropsis gaditana|type=mRNA|length=1748bp
CCGTCCGCACTTGTTGACCCTCTCCCTCACGCGCACATCCATCATCACAT
CGTGGAATGACAGTCAAGGGGGGCTTGGAGTCAGTGCGTGCCAACTTGCC
GAGCCGACGGGATCATTCACCATCAGGCACGAACATTCGTGGCGGCAAAA
ATATCTCAGATCCGGCCTAGGATGGATTTTGCTCTGGTTCAAGAATGGGA
GCGGGAGGAGTCGCAGCGTGGCACGCCCTCGACCAAACCTGATGGGAGAG
TCGTGTGCACCGCAACAAAAAGAAGACGGCCATTCCAAGCAGGAGACATG
GTCGTTGTAATGGAACGGCATGACAGTTATTCACACGTGTACCTTGAGCC
AGGGGGCATGTTTCAGAATCGTTTAGGGCATTTCCACCACGACGACATCA
TCGGGAAACACGTTGGCGCAAAGGTCATGTCCAGGTCCGCAGGTGGGCGA
TTTATACGCTTGCTATTGCCCTCTCCGGAGCTGTGGACGATGAGCATCAA
GCAGCGCACACAGATTGTTCAAGACCTGGATCAGAGTATGGTTGTGTTTA
AGCTTGGTCTGCGGCCAGGCATGCGAGTCCTGGAGTCTGGAACGGGCTCT
GGGGCAATGTCACATGCAATTTTGCGCAGTATCAGTCCACATGGGCACTT
ACACACATTTGAATTCAATGAGGCACGAGCGATAGACGCACAAGTGGATT
TCGAGAGGAATCGAGTGAGCCATTTGGTGACGGTGATGCACGGAGACATA
TGCCAGGATTTGAGTCTGTCAGATGAAGAGAGCACTATTGTATGTACCTC
TGCGCACATGGAGACGGAAAGTGACGGTAAGGATCCACTGGGTGAGCATA
ATGGCCTCGCCCCGAACGGGACAGCCGCTGCCTCCCAACCCGAGGCTCCC
CCCCCCCTCGCCCATCCTCCCGCGGTTTCCGTCGCTCCAGTTGCACGGAC
TCTACGTGGTCGGATAGACGCCGTCTTTCTGGATGTGCCGAGTCCCTGGC
TGGCCATTCCCCTGGCCGCAGCAGTCTTGAAGGCGAACGCGCGCATCGCC
ACGTATTCGCCATGTTTCGAGCAGGTTTTCAAGACTTGCGAGGCCCTGCG
GGAGCATAACTTTCATTCCATTCGTACCATGGAGGTACGGCACAAGCAGT
TTGAGCTCAGGCGGACGTGCATGCCGCATTTGGATTTCGGGGACGGGGAT
AGCGTCGGGGTGGGGGAGGATCTGGGTGGGGCCGCGGAGAAGGGAAATGG
GGTGCGAGGGGATGATCAGAACACCGCTCATGCCAGAGAGACAGGACCGA
AAAAGTCCGAAAGTGAAGGCATGGAAGCATGGCGGAGTAAACGGAAGCAC
AGAGAGGCGGAGGGCGGGAAAGATGCCCGCCCGTTCGCGAAAGCGCGTCC
CGTCATGCGGGGCCACACAGCCTTCCTGACCTTCGCCGTCGCCGGTCTTC
ACCCACCCAAGAGCCTAGGCCCGGGCGCGGTGGGACCGACCGTCCCTGCT
CCCTGGATACCGACCTCGGGGCCGCCAGCACCGGCTCCGGACCCGGTCGA
CGAGCTGGCCGCTGAGGCTTGAGCAGAAGGAATCGATCTCCTCTATGTAA
CAAAAAAAACAGCAGAAGAAATCGATCTCCTCTATGTGACAAACGAAACA
GCAGAAGGAATCGATCTCCCCTATGTGACAAAAGAAACAGCAGAAGGAAT
CCATCTCCTCTATGTGACAAAAGAAACCAAATAACAAACAGGCGATTT back to topprotein sequence of rna2067 >rna2067-protein ID=rna2067-protein|Name=rna2067|organism=Nannochloropsis gaditana|type=polypeptide|length=736bp
MLHPVEAAPGKLKKKKRLLKGDKWGSKVSKRAAPSPSWPSTSGLKKEKGG
LLAGRGPLSSGKVAGPSQGKSEAFDADTWEACWQGIERREAVRDGVAWLL
KHAASNSNSEKCEGLRTLPAVLDMVRLTRDPVRQEVLEAAHLPLEKWKVE
NAQEQWGPSQVRQGNGSGGAAGSLEGGRCAHQEDIGKATTQQTLIVAVRR
IFSLERTGMYAQEESKRALLKAFVSVREGSERASSSPVPEAAHRSTWSIE
DYLGWNPLHAPPPASLRDPFDPTGPRLSQQRVLALSVEWMMVLELSGLVA
DRSEGEEGRRRGGRGRGTGGRAEPEEREEDNGAVAVEDGGAASPKAATME
ESEPQTAALAEEGRLVHVLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVV
WALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLG
SHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGR
GTGRDRFVAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPG
DLPPQGEDGSSVFLLPDGTWDRRVKDLERIVTKIKKQFKKRQAGAAAVRA
ASATPSAASTPAPMVPASGALRMADTAHPLAAQGSQEAAPLDERARMEAA
VLSEADQAGVARVNELGRQIEGAKAKQDWTRVREALLTLEAEPMSLTILT
ATSIGRVVNKLKKAEDAGVALLGKGLVKKWKALVEG back to topmRNA from alignment at CM002458.1:810572..813597- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2067 ID=rna2067|Name=rna2067|organism=Nannochloropsis gaditana|type=mRNA|length=3026bp|location=Sequence derived from alignment at CM002458.1:810572..813597- (Nannochloropsis gaditana)
GAGAATAAAGCAGACTGAGAGTGGTTGACTCATCGTTGGATTTGATTCGC
AGCATCATAAGAGTAAAAATCGTTTTAGTGTCTTGATGCATCGACAGAGG
CTTGTCTACTGATGATAGGCTGCTCCTCCGAACACGGAGCTGCTTTGACT
TAATATCCGGGTTATGCCTTACTCTCCCGCCACGGCAAATAAATTTTGTT
GCCTTACAAAAGTACTGAAAATCATCGAAAGGTATTGCATTCGAAAGTAT
TTTCCTGTCCTCTCGTTTTTCCGCGGCGTTTTTCATGGGGTTCCCTGACC
TTCAAGTGACATGTCCGCCGACCCCTTCCTCCATTAGGCTACAACGAATG
CGAAGTTCGTTTTGCGATCGTAAATATAATTACCAAATTAATGTTATTGC
TGTGGCACAGGAAAACTGTGCGAATGGATCAGGTTTCAATTTGCCTGTAA
AATTATTAATCCGACGTGTTCTGTGACCTTTAATCGCTCACGCAGCCACG
GGTTGCCCAGTCCCCTACCTCTCGTTGCCTTGCTTTGTCAAATTGCATTC
GACTCTCTGCAATTTTCCTCTTTTTTGGGATATGAATCTAATACGACAGG
ATAAATAAGCACCTCGCGTGACGTGGGAACAATAGAATGCTGCATCCTGT
CGAAGCTGCACCGGGAAAGCTGAAGAAGAAGAAGCGTCTCCTGAAAGGGG
TAAGAGGAGGGATAGGGCATTTCCTGATTCCTTTCAATGGGAGCCGCAAA
GTTTACATTATCCACGCATGTCTACCCGCAATAAAAGGACAAATGGGGTT
CAAAGGTGTCGAAAAGGGCGGCTCCATCACCGTCTTGGCCGTCAACTTCC
GGACTGAAGAAGGAAAAAGGGGGTTTACTTGCCGGTCGCGGTCCTTTGTC
GAGTGGGAAAGTTGCGGGTCCTAGCCAGGGCAAGAGCGAGGCCTTCGATG
CAGACACCTGGGAGGCTTGTTGGCAGGGGATTGAACGACGTGAAGCAGTA
CGAGACGGAGTGGCATGGCTGCTAAAGCACGCGGCATCTAACAGTAACAG
TGAGAAGTGCGAGGGCCTGAGGACTCTTCCGGCGGTCCTGGACATGGTTC
GTCTAACCCGGGACCCCGTGAGACAGGAGGTGTTGGAAGCAGCACACCTG
CCTCTGGAAAAGTGGAAGGTGGAAAATGCACAAGAGCAGTGGGGCCCCTC
CCAAGTCCGCCAAGGCAATGGCAGCGGCGGAGCAGCCGGTAGTCTCGAGG
GAGGGCGCTGCGCCCACCAGGAGGACATTGGCAAGGCCACAACGCAGCAG
ACTTTAATTGTGGCAGTCCGTCGCATTTTTTCTTTGGAACGAACCGGGAT
GTATGCTCAGGAGGAATCCAAGCGAGCCCTGTTGAAAGCCTTCGTCAGCG
TGAGAGAGGGGAGCGAGCGAGCATCCTCGTCTCCTGTCCCGGAGGCTGCC
CACCGGTCCACATGGAGCATAGAAGACTATCTAGGCTGGAACCCGCTCCA
TGCCCCCCCCCCCGCGTCGCTCCGGGACCCCTTCGATCCGACGGGTCCCC
GGCTCTCCCAACAGCGCGTGTTGGCGCTGAGCGTGGAGTGGATGATGGTG
CTGGAGCTCTCAGGCCTGGTGGCGGACAGGAGCGAAGGGGAGGAGGGGCG
CCGGCGTGGAGGGAGAGGGAGAGGGACGGGAGGGAGAGCGGAACCCGAAG
AAAGGGAAGAAGACAACGGGGCTGTTGCCGTGGAAGACGGAGGCGCGGCC
TCTCCCAAGGCCGCTACCATGGAGGAATCCGAGCCGCAGACGGCAGCCTT
GGCCGAGGAAGGTCGACTCGTCCATGTCCTCAAGTGGCTGCCCTGTGTTC
GCCCTTACCGGGGCCCCGCCCAAGTGGAGGCTGCCGTGTACCGCGACCAA
GTCTGCCTGGCGACCAGCGTGGTGTGGGCCCTGAGTCGGGGCGGGGAGCT
CCGCATTCCGGCCCTCTTGCTCCCGCACGAGTACTTCTTCTTGCGCGAAC
ACTTGGCTGTGCAGCTTCTTCAGAGGGACGTCCTGTCCGTGGGCCGGACC
ATCGATGCCCTCCGTGTGCTCGGGAGCCACGAGGAGAACCCCATGATCCG
CGCCGGCATGACCTACTTGATGCGTAACCAGGCCCAGGCGGGAAATTGGC
CGGCGGCCACGACCGGCGCGCCCGTGACGGAGGAGGAGGACAGAAATGCC
AGGCTAGGGGGATACGGCGGTCGAGGCACAGGCCGGGATCGATTCGTGGC
CCCTACCCTGGCGGCCACGCGCGCGCTGCTCGTGCGGGAGTTCAACGGTT
TCGGACCGCTTCCTCTCGAGGTCCTGGACCTGCTGCTGGCGTGGCAGAAG
GAGGACGCAGACCCTCTCCCGGGCGACCTCCCGCCGCAGGGAGAGGACGG
GAGCAGCGTCTTCCTGCTGCCCGACGGGACGTGGGACCGCCGGGTCAAGG
ATTTGGAGCGCATCGTCACAAAAATAAAGAAGCAATTCAAGAAGAGACAG
GCTGGCGCCGCTGCCGTCCGTGCGGCGTCTGCAACTCCTTCTGCTGCCTC
TACCCCCGCTCCTATGGTCCCTGCCTCTGGAGCCCTTAGGATGGCGGACA
CAGCCCATCCACTAGCGGCCCAAGGGAGTCAGGAGGCCGCCCCCCTGGAC
GAGCGTGCGAGGATGGAAGCCGCCGTGCTCTCCGAAGCGGACCAAGCCGG
CGTGGCGCGGGTCAATGAGCTGGGTAGACAGATTGAGGGGGCGAAGGCCA
AGCAGGATTGGACGCGGGTGCGGGAGGCGCTGCTGACCCTGGAGGCTGAG
CCCATGTCTCTGACCATCTTAACCGCCACGTCGATCGGGCGAGTAGTGAA
CAAGCTGAAGAAGGCGGAGGACGCGGGCGTGGCGCTCCTAGGGAAGGGCC
TGGTGAAGAAGTGGAAGGCTTTGGTGGAGGGCTGAGGGGCCGAAGAGGGG
GGAAGGGGACAGACCAGATCCTCGGGGGCAAGAGCCATGCTCGACAAAGC
AAGTAATAACTTTGATAGGAAATCGC back to topCoding sequence (CDS) from alignment at CM002458.1:810572..813597- >rna2067 ID=rna2067|Name=rna2067|organism=Nannochloropsis gaditana|type=CDS|length=4422bp|location=Sequence derived from alignment at CM002458.1:810572..813597- (Nannochloropsis gaditana)
GACAAATGGGGTTCAAAGGTGTCGAAAAGGGCGGCTCCATCACCGTCTTG
GCCGTCAACTTCCGGACTGAAGAAGGAAAAAGGGGGTTTACTTGCCGGTC
GCGGTCCTTTGTCGAGTGGGAAAGTTGCGGGTCCTAGCCAGGGCAAGAGC
GAGGCCTTCGATGCAGACACCTGGGAGGCTTGTTGGCAGGGGATTGAACG
ACGTGAAGCAGTACGAGACGGAGTGGCATGGCTGCTAAAGCACGCGGCAT
CTAACAGTAACAGTGAGAAGTGCGAGGGCCTGAGGACTCTTCCGGCGGTC
CTGGACATGGTTCGTCTAACCCGGGACCCCGTGAGACAGGAGGTGTTGGA
AGCAGCACACCTGCCTCTGGAAAAGTGGAAGGTGGAAAATGCACAAGAGC
AGTGGGGCCCCTCCCAAGTCCGCCAAGGCAATGGCAGCGGCGGAGCAGCC
GGTAGTCTCGAGGGAGGGCGCTGCGCCCACCAGGAGGACATTGGCAAGGC
CACAACGCAGCAGACTTTAATTGTGGCAGTCCGTCGCATTTTTTCTTTGG
AACGAACCGGGATGTATGCTCAGGAGGAATCCAAGCGAGCCCTGTTGAAA
GCCTTCGTCAGCGTGAGAGAGGGGAGCGAGCGAGCATCCTCGTCTCCTGT
CCCGGAGGCTGCCCACCGGTCCACATGGAGCATAGAAGACTATCTAGGCT
GGAACCCGCTCCATGCCCCCCCCCCCGCGTCGCTCCGGGACCCCTTCGAT
CCGACGGGTCCCCGGCTCTCCCAACAGCGCGTGTTGGCGCTGAGCGTGGA
GTGGATGATGGTGCTGGAGCTCTCAGGCCTGGTGGCGGACAGGAGCGAAG
GGGAGGAGGGGCGCCGGCGTGGAGGGAGAGGGAGAGGGACGGGAGGGAGA
GCGGAACCCGAAGAAAGGGAAGAAGACAACGGGGCTGTTGCCGTGGAAGA
CGGAGGCGCGGCCTCTCCCAAGGCCGCTACCATGGAGGAATCCGAGCCGC
AGACGGCAGCCTTGGCCGAGGAAGGTCGACTCGTCCATGTCCTCAAGTGG
CTGCCCTGTGTTCGCCCTTACCGGGGCCCCGCCCAAGTGGAGGCTGCCGT
GTACCGCGACCAAGTCTGCCTGGCGACCAGCGTGGTGTGGGCCCTGAGTC
GGGGCGGGGAGCTCCGCATTCCGGCCCTCTTGCTCCCGCACGAGTACTTC
TTCTTGCGCGAACACTTGGCTGTGCAGCTTCTTCAGAGGGACGTCCTGTC
CGTGGGCCGGACCATCGATGCCCTCCGTGTGCTCGGGAGCCACGAGGAGA
ACCCCATGATCCGCGCCGGCATGACCTACTTGATGCGTAACCAGGCCCAG
GCGGGAAATTGGCCGGCGGCCACGACCGGCGCGCCCGTGACGGAGGAGGA
GGACAGAAATGCCAGGCTAGGGGGATACGGCGGTCGAGGCACAGGCCGGG
ATCGATTCGTGGCCCCTACCCTGGCGGCCACGCGCGCGCTGCTCGTGCGG
GAGTTCAACGGTTTCGGACCGCTTCCTCTCGAGGTCCTGGACCTGCTGCT
GGCGTGGCAGAAGGAGGACGCAGACCCTCTCCCGGGCGACCTCCCGCCGC
AGGGAGAGGACGGGAGCAGCGTCTTCCTGCTGCCCGACGGGACGTGGGAC
CGCCGGGTCAAGGATTTGGAGCGCATCGTCACAAAAATAAAGAAGCAATT
CAAGAAGAGACAGGCTGGCGCCGCTGCCGTCCGTGCGGCGTCTGCAACTC
CTTCTGCTGCCTCTACCCCCGCTCCTATGGTCCCTGCCTCTGGAGCCCTT
AGGATGGCGGACACAGCCCATCCACTAGCGGCCCAAGGGAGTCAGGAGGC
CGCCCCCCTGGACGAGCGTGCGAGGATGGAAGCCGCCGTGCTCTCCGAAG
CGGACCAAGCCGGCGTGGCGCGGGTCAATGAGCTGGGTAGACAGATTGAG
GGGGCGAAGGCCAAGCAGGATTGGACGCGGGTGCGGGAGGCGCTGCTGAC
CCTGGAGGCTGAGCCCATGTCTCTGACCATCTTAACCGCCACGTCGATCG
GGCGAGTAGTGAACAAGCTGAAGAAGGCGGAGGACGCGGGCGTGGCGCTC
CTAGGGAAGGGCCTGGTGAAGAAGTGGAAGGCTTTGGTGGAGGGCTGAAT
GCTGCATCCTGTCGAAGCTGCACCGGGAAAGCTGAAGAAGAAGAAGCGTC
TCCTGAAAGGGGACAAATGGGGTTCAAAGGTGTCGAAAAGGGCGGCTCCA
TCACCGTCTTGGCCGTCAACTTCCGGACTGAAGAAGGAAAAAGGGGGTTT
ACTTGCCGGTCGCGGTCCTTTGTCGAGTGGGAAAGTTGCGGGTCCTAGCC
AGGGCAAGAGCGAGGCCTTCGATGCAGACACCTGGGAGGCTTGTTGGCAG
GGGATTGAACGACGTGAAGCAGTACGAGACGGAGTGGCATGGCTGCTAAA
GCACGCGGCATCTAACAGTAACAGTGAGAAGTGCGAGGGCCTGAGGACTC
TTCCGGCGGTCCTGGACATGGTTCGTCTAACCCGGGACCCCGTGAGACAG
GAGGTGTTGGAAGCAGCACACCTGCCTCTGGAAAAGTGGAAGGTGGAAAA
TGCACAAGAGCAGTGGGGCCCCTCCCAAGTCCGCCAAGGCAATGGCAGCG
GCGGAGCAGCCGGTAGTCTCGAGGGAGGGCGCTGCGCCCACCAGGAGGAC
ATTGGCAAGGCCACAACGCAGCAGACTTTAATTGTGGCAGTCCGTCGCAT
TTTTTCTTTGGAACGAACCGGGATGTATGCTCAGGAGGAATCCAAGCGAG
CCCTGTTGAAAGCCTTCGTCAGCGTGAGAGAGGGGAGCGAGCGAGCATCC
TCGTCTCCTGTCCCGGAGGCTGCCCACCGGTCCACATGGAGCATAGAAGA
CTATCTAGGCTGGAACCCGCTCCATGCCCCCCCCCCCGCGTCGCTCCGGG
ACCCCTTCGATCCGACGGGTCCCCGGCTCTCCCAACAGCGCGTGTTGGCG
CTGAGCGTGGAGTGGATGATGGTGCTGGAGCTCTCAGGCCTGGTGGCGGA
CAGGAGCGAAGGGGAGGAGGGGCGCCGGCGTGGAGGGAGAGGGAGAGGGA
CGGGAGGGAGAGCGGAACCCGAAGAAAGGGAAGAAGACAACGGGGCTGTT
GCCGTGGAAGACGGAGGCGCGGCCTCTCCCAAGGCCGCTACCATGGAGGA
ATCCGAGCCGCAGACGGCAGCCTTGGCCGAGGAAGGTCGACTCGTCCATG
TCCTCAAGTGGCTGCCCTGTGTTCGCCCTTACCGGGGCCCCGCCCAAGTG
GAGGCTGCCGTGTACCGCGACCAAGTCTGCCTGGCGACCAGCGTGGTGTG
GGCCCTGAGTCGGGGCGGGGAGCTCCGCATTCCGGCCCTCTTGCTCCCGC
ACGAGTACTTCTTCTTGCGCGAACACTTGGCTGTGCAGCTTCTTCAGAGG
GACGTCCTGTCCGTGGGCCGGACCATCGATGCCCTCCGTGTGCTCGGGAG
CCACGAGGAGAACCCCATGATCCGCGCCGGCATGACCTACTTGATGCGTA
ACCAGGCCCAGGCGGGAAATTGGCCGGCGGCCACGACCGGCGCGCCCGTG
ACGGAGGAGGAGGACAGAAATGCCAGGCTAGGGGGATACGGCGGTCGAGG
CACAGGCCGGGATCGATTCGTGGCCCCTACCCTGGCGGCCACGCGCGCGC
TGCTCGTGCGGGAGTTCAACGGTTTCGGACCGCTTCCTCTCGAGGTCCTG
GACCTGCTGCTGGCGTGGCAGAAGGAGGACGCAGACCCTCTCCCGGGCGA
CCTCCCGCCGCAGGGAGAGGACGGGAGCAGCGTCTTCCTGCTGCCCGACG
GGACGTGGGACCGCCGGGTCAAGGATTTGGAGCGCATCGTCACAAAAATA
AAGAAGCAATTCAAGAAGAGACAGGCTGGCGCCGCTGCCGTCCGTGCGGC
GTCTGCAACTCCTTCTGCTGCCTCTACCCCCGCTCCTATGGTCCCTGCCT
CTGGAGCCCTTAGGATGGCGGACACAGCCCATCCACTAGCGGCCCAAGGG
AGTCAGGAGGCCGCCCCCCTGGACGAGCGTGCGAGGATGGAAGCCGCCGT
GCTCTCCGAAGCGGACCAAGCCGGCGTGGCGCGGGTCAATGAGCTGGGTA
GACAGATTGAGGGGGCGAAGGCCAAGCAGGATTGGACGCGGGTGCGGGAG
GCGCTGCTGACCCTGGAGGCTGAGCCCATGTCTCTGACCATCTTAACCGC
CACGTCGATCGGGCGAGTAGTGAACAAGCTGAAGAAGGCGGAGGACGCGG
GCGTGGCGCTCCTAGGGAAGGGCCTGGTGAAGAAGTGGAAGGCTTTGGTG
GAGGGCTGAATGCTGCATCCTGTCGAAGCTGCACCGGGAAAGCTGAAGAA
GAAGAAGCGTCTCCTGAAAGGG back to top
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