EWM28527.1, cds2059 (CDS) Nannochloropsis gaditana

Overview
NameEWM28527.1
Unique Namecds2059
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:812899..812961 -
Alignment locationCM002458.1:810663..812810 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28527.1
ProductTranscription factor IIS
Orig transcript idgnl|cribi|Naga_100009g96.570.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:812899..812961 -
CM002458.1supercontigCM002458.1:810663..812810 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR017923TFIIS_N
IPR003617TFIIS/CRSP70_N_sub
Homology
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|585110945|gb|EWM28527.1| (Transcription factor IIS [Nannochloropsis gaditana])

HSP 1 Score: 1468.75 bits (3801), Expect = 0.000e+0
Identity = 736/736 (100.00%), Postives = 736/736 (100.00%), Query Frame = 0
Query:    1 MLHPVEAAPGKLKKKKRLLKGDKWGSKVSKRAAPSPSWPSTSGLKKEKGGLLAGRGPLSSGKVAGPSQGKSEAFDADTWEACWQGIERREAVRDGVAWLLKHAASNSNSEKCEGLRTLPAVLDMVRLTRDPVRQEVLEAAHLPLEKWKVENAQEQWGPSQVRQGNGSGGAAGSLEGGRCAHQEDIGKATTQQTLIVAVRRIFSLERTGMYAQEESKRALLKAFVSVREGSERASSSPVPEAAHRSTWSIEDYLGWNPLHAPPPASLRDPFDPTGPRLSQQRVLALSVEWMMVLELSGLVADRSEGEEGRRRGGRGRGTGGRAEPEEREEDNGAVAVEDGGAASPKAATMEESEPQTAALAEEGRLVHVLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPGDLPPQGEDGSSVFLLPDGTWDRRVKDLERIVTKIKKQFKKRQAGAAAVRAASATPSAASTPAPMVPASGALRMADTAHPLAAQGSQEAAPLDERARMEAAVLSEADQAGVARVNELGRQIEGAKAKQDWTRVREALLTLEAEPMSLTILTATSIGRVVNKLKKAEDAGVALLGKGLVKKWKALVEG 736
            MLHPVEAAPGKLKKKKRLLKGDKWGSKVSKRAAPSPSWPSTSGLKKEKGGLLAGRGPLSSGKVAGPSQGKSEAFDADTWEACWQGIERREAVRDGVAWLLKHAASNSNSEKCEGLRTLPAVLDMVRLTRDPVRQEVLEAAHLPLEKWKVENAQEQWGPSQVRQGNGSGGAAGSLEGGRCAHQEDIGKATTQQTLIVAVRRIFSLERTGMYAQEESKRALLKAFVSVREGSERASSSPVPEAAHRSTWSIEDYLGWNPLHAPPPASLRDPFDPTGPRLSQQRVLALSVEWMMVLELSGLVADRSEGEEGRRRGGRGRGTGGRAEPEEREEDNGAVAVEDGGAASPKAATMEESEPQTAALAEEGRLVHVLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPGDLPPQGEDGSSVFLLPDGTWDRRVKDLERIVTKIKKQFKKRQAGAAAVRAASATPSAASTPAPMVPASGALRMADTAHPLAAQGSQEAAPLDERARMEAAVLSEADQAGVARVNELGRQIEGAKAKQDWTRVREALLTLEAEPMSLTILTATSIGRVVNKLKKAEDAGVALLGKGLVKKWKALVEG
Sbjct:    1 MLHPVEAAPGKLKKKKRLLKGDKWGSKVSKRAAPSPSWPSTSGLKKEKGGLLAGRGPLSSGKVAGPSQGKSEAFDADTWEACWQGIERREAVRDGVAWLLKHAASNSNSEKCEGLRTLPAVLDMVRLTRDPVRQEVLEAAHLPLEKWKVENAQEQWGPSQVRQGNGSGGAAGSLEGGRCAHQEDIGKATTQQTLIVAVRRIFSLERTGMYAQEESKRALLKAFVSVREGSERASSSPVPEAAHRSTWSIEDYLGWNPLHAPPPASLRDPFDPTGPRLSQQRVLALSVEWMMVLELSGLVADRSEGEEGRRRGGRGRGTGGRAEPEEREEDNGAVAVEDGGAASPKAATMEESEPQTAALAEEGRLVHVLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPGDLPPQGEDGSSVFLLPDGTWDRRVKDLERIVTKIKKQFKKRQAGAAAVRAASATPSAASTPAPMVPASGALRMADTAHPLAAQGSQEAAPLDERARMEAAVLSEADQAGVARVNELGRQIEGAKAKQDWTRVREALLTLEAEPMSLTILTATSIGRVVNKLKKAEDAGVALLGKGLVKKWKALVEG 736          
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|676381265|ref|XP_009033911.1| (hypothetical protein AURANDRAFT_70922 [Aureococcus anophagefferens] >gi|323455687|gb|EGB11555.1| hypothetical protein AURANDRAFT_70922 [Aureococcus anophagefferens])

HSP 1 Score: 107.071 bits (266), Expect = 5.418e-20
Identity = 65/194 (33.51%), Postives = 100/194 (51.55%), Query Frame = 0
Query:  368 VLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGN-WPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPGDLPPQGEDGS 560
            VL  L  +RPYRGPA +    Y DQ  L T VV+ L+  GEL +   LLPHE+ F++EH+ + + +RDV  VG  ++ LR  G+ + +  ++ G+T+L+  Q QA + W           + D +A    +             T+ A++ALL   F G+GP  L  +D+L  W+  D    P DLP +  D +
Sbjct:  369 VLAHLRTLRPYRGPADLPWDAYVDQCYLVTHVVFTLNNWGELALEPDLLPHEHAFIKEHIGIAIRERDVHLVGEYVECLRCFGATDADASVQLGITFLLNAQDQATHRW-----------DVDMDAYTSYHA------------TMVASQALLAHSFRGYGPGLLGAVDVLDKWRAADC---PEDLPVEHPDAA 536          
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|950891992|ref|XP_014527735.1| (hypothetical protein JH06_3471 [Blastocystis sp. subtype 4] >gi|902862346|gb|KNB44292.1| hypothetical protein JH06_3471 [Blastocystis sp. subtype 4])

HSP 1 Score: 99.7525 bits (247), Expect = 1.089e-18
Identity = 60/194 (30.93%), Postives = 95/194 (48.97%), Query Frame = 0
Query:  368 VLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVA--PTLAATRALLVREFNGFGPLPLEVLDLLLAWQKED---ADPLPGDLPPQG 556
             L+WLP +RPY+   ++    + DQ  L T V++ LS+ G+LR+    LPHEY FL+EHL + + ++DV  VG  I  LR+ G  E N  I  G+ +L+  Q   G+W               N  + G+         +VA   T+ A +AL+   F GFG +     +++  W   +    +P+P  LP + 
Sbjct:  198 FLRWLPFLRPYKSSLELPWKEFVDQCYLITHVIFTLSQWGQLRLQIQQLPHEYLFLQEHLPLMIQKKDVHLVGEFIQCLRIFGVEENNSSILDGLQFLLEEQNADGSW--------------DNQMMDGFHVDLA----YVAYHATMVAIQALIPPMFTGFGCMSESTEEIVSRWYSTEFLRCEPIPSPLPSEN 373          
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|1032150322|gb|OAO14119.1| (Prenyltransferase [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 98.9821 bits (245), Expect = 2.093e-18
Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = 0
Query:  369 LKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVAPTLAATRALLVREFNGFGPL 529
            L+WLP +RPY+   ++    + D+  L T VV+ LS+ G+LR+    LPHEY FLREHL + L ++DV  VG  ++ LR+ G  E   +I  GM +L+  Q   G+W        V E     A +  +             T+ A +AL+  EF+GFG +
Sbjct:  197 LRWLPSLRPYKSSNELPWKEFVDECYLITHVVFTLSQWGQLRLQIQQLPHEYLFLREHLPLLLQKQDVHLVGEFVECLRIFGVAENASLILEGMHFLLEEQNADGSWDNKRKEMNVDE-----AYVAYHA------------TMVAIQALIPSEFSGFGCM 340          
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|953490674|emb|CEG46328.1| (Transcription factor IIS, N-terminal [Plasmopara halstedii])

HSP 1 Score: 97.0561 bits (240), Expect = 2.499e-17
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 0
Query:  368 VLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVL-GSHEENPMIRAGMTYLMRNQAQAGNWPAATT 480
            +LK L  + PY+GP  +    Y DQV   T++++ L+  G LR    LLPHEYFFLR HL   L Q+DV  +   + ALR   GS++  PM R GM +L+ +Q + G+WP+  T
Sbjct:  266 LLKHLGSIYPYKGPEDLSIQEYEDQVHFVTTLIFVLTNHGRLRCEIELLPHEYFFLRHHLVYHLAQQDVALLSEIMRALRCFEGSNDLVPM-RRGMAFLLLSQREDGSWPSGDT 378          
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|566033929|gb|ETI56840.1| (hypothetical protein F443_00774 [Phytophthora parasitica P1569] >gi|568059731|gb|ETM56301.1| hypothetical protein L914_00707 [Phytophthora parasitica] >gi|570337626|gb|ETO85574.1| hypothetical protein F444_00775 [Phytophthora parasitica P1976] >gi|570998388|gb|ETP54618.1| hypothetical protein F442_00722 [Phytophthora parasitica P10297])

HSP 1 Score: 90.1225 bits (222), Expect = 3.370e-15
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 0
Query:  375 VRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNW 475
            V PY+GP  +    Y DQV L T++V+ L+  G LR    LLPHEYFFLR H+   L Q+D   +G ++ ALR          +R GM YL+  Q + G+W
Sbjct:  273 VYPYKGPGDLSPQEYEDQVHLVTTLVFVLTNHGRLRCETNLLPHEYFFLRHHIVYHLTQQDAALLGESLRALRCFEGSANLVQMRRGMAYLLLTQREDGSW 373          
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|566033930|gb|ETI56841.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|568059732|gb|ETM56302.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570337627|gb|ETO85575.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570998389|gb|ETP54619.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 88.9669 bits (219), Expect = 5.214e-15
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 0
Query:  375 VRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNW 475
            V PY+GP  +    Y DQV L T++V+ L+  G LR    LLPHEYFFLR H+   L Q+D   +G ++ ALR          +R GM YL+  Q + G+W
Sbjct:  273 VYPYKGPGDLSPQEYEDQVHLVTTLVFVLTNHGRLRCETNLLPHEYFFLRHHIVYHLTQQDAALLGESLRALRCFEGSANLVQMRRGMAYLLLTQREDGSW 373          
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|675162887|ref|XP_008890328.1| (hypothetical protein PPTG_00653 [Phytophthora parasitica INRA-310] >gi|568109634|gb|ETN24241.1| hypothetical protein PPTG_00653 [Phytophthora parasitica INRA-310])

HSP 1 Score: 88.5817 bits (218), Expect = 1.125e-14
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 0
Query:  375 VRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNW 475
            V PY+GP  +    Y DQV L T++V+ L+  G LR    LLPHEYFFLR H+   L Q++   +G ++ ALR          +R GM YL+  Q + G+W
Sbjct:  273 VYPYKGPGDLSPQEYEDQVHLVTTLVFVLTNHGRLRCETNLLPHEYFFLRHHIVYHLTQQNAALLGESLRALRCFEGSANLVQMRRGMAYLLLTQREDGSW 373          
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|568029123|gb|ETM03054.1| (hypothetical protein L917_00677 [Phytophthora parasitica])

HSP 1 Score: 88.5817 bits (218), Expect = 1.165e-14
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 0
Query:  375 VRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNW 475
            V PY+GP  +    Y DQV L T++V+ L+  G LR    LLPHEYFFLR H+   L Q++   +G ++ ALR          +R GM YL+  Q + G+W
Sbjct:  273 VYPYKGPGDLSPQEYEDQVHLVTTLVFVLTNHGRLRCETNLLPHEYFFLRHHIVYHLTQQNAALLGESLRALRCFEGSANLVQMRRGMAYLLLTQREDGSW 373          
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|567971613|gb|ETK96618.1| (hypothetical protein L915_00720 [Phytophthora parasitica] >gi|567999951|gb|ETL49981.1| hypothetical protein L916_00714 [Phytophthora parasitica] >gi|570961643|gb|ETP26622.1| hypothetical protein F441_00762 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 88.5817 bits (218), Expect = 1.207e-14
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 0
Query:  375 VRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNW 475
            V PY+GP  +    Y DQV L T++V+ L+  G LR    LLPHEYFFLR H+   L Q++   +G ++ ALR          +R GM YL+  Q + G+W
Sbjct:  273 VYPYKGPGDLSPQEYEDQVHLVTTLVFVLTNHGRLRCETNLLPHEYFFLRHHIVYHLTQQNAALLGESLRALRCFEGSANLVQMRRGMAYLLLTQREDGSW 373          
The following BLAST results are available for this feature:
BLAST of EWM28527.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110945|gb|EWM28527.1|0.000e+0100.00Transcription factor IIS [Nannochloropsis gaditana... [more]
gi|676381265|ref|XP_009033911.1|5.418e-2033.51hypothetical protein AURANDRAFT_70922 [Aureococcus... [more]
gi|950891992|ref|XP_014527735.1|1.089e-1830.93hypothetical protein JH06_3471 [Blastocystis sp. s... [more]
gi|1032150322|gb|OAO14119.1|2.093e-1834.78Prenyltransferase [Blastocystis sp. ATCC 50177/Nan... [more]
gi|953490674|emb|CEG46328.1|2.499e-1742.11Transcription factor IIS, N-terminal [Plasmopara h... [more]
gi|566033929|gb|ETI56840.1|3.370e-1541.58hypothetical protein F443_00774 [Phytophthora para... [more]
gi|566033930|gb|ETI56841.1|5.214e-1541.58hypothetical protein, variant 1 [Phytophthora para... [more]
gi|675162887|ref|XP_008890328.1|1.125e-1440.59hypothetical protein PPTG_00653 [Phytophthora para... [more]
gi|568029123|gb|ETM03054.1|1.165e-1440.59hypothetical protein L917_00677 [Phytophthora para... [more]
gi|567971613|gb|ETK96618.1|1.207e-1440.59hypothetical protein L915_00720 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2067rna2067Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications