EWM28527.1, cds2059 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|585110945|gb|EWM28527.1| (Transcription factor IIS [Nannochloropsis gaditana]) HSP 1 Score: 1468.75 bits (3801), Expect = 0.000e+0 Identity = 736/736 (100.00%), Postives = 736/736 (100.00%), Query Frame = 0
Query: 1 MLHPVEAAPGKLKKKKRLLKGDKWGSKVSKRAAPSPSWPSTSGLKKEKGGLLAGRGPLSSGKVAGPSQGKSEAFDADTWEACWQGIERREAVRDGVAWLLKHAASNSNSEKCEGLRTLPAVLDMVRLTRDPVRQEVLEAAHLPLEKWKVENAQEQWGPSQVRQGNGSGGAAGSLEGGRCAHQEDIGKATTQQTLIVAVRRIFSLERTGMYAQEESKRALLKAFVSVREGSERASSSPVPEAAHRSTWSIEDYLGWNPLHAPPPASLRDPFDPTGPRLSQQRVLALSVEWMMVLELSGLVADRSEGEEGRRRGGRGRGTGGRAEPEEREEDNGAVAVEDGGAASPKAATMEESEPQTAALAEEGRLVHVLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPGDLPPQGEDGSSVFLLPDGTWDRRVKDLERIVTKIKKQFKKRQAGAAAVRAASATPSAASTPAPMVPASGALRMADTAHPLAAQGSQEAAPLDERARMEAAVLSEADQAGVARVNELGRQIEGAKAKQDWTRVREALLTLEAEPMSLTILTATSIGRVVNKLKKAEDAGVALLGKGLVKKWKALVEG 736
MLHPVEAAPGKLKKKKRLLKGDKWGSKVSKRAAPSPSWPSTSGLKKEKGGLLAGRGPLSSGKVAGPSQGKSEAFDADTWEACWQGIERREAVRDGVAWLLKHAASNSNSEKCEGLRTLPAVLDMVRLTRDPVRQEVLEAAHLPLEKWKVENAQEQWGPSQVRQGNGSGGAAGSLEGGRCAHQEDIGKATTQQTLIVAVRRIFSLERTGMYAQEESKRALLKAFVSVREGSERASSSPVPEAAHRSTWSIEDYLGWNPLHAPPPASLRDPFDPTGPRLSQQRVLALSVEWMMVLELSGLVADRSEGEEGRRRGGRGRGTGGRAEPEEREEDNGAVAVEDGGAASPKAATMEESEPQTAALAEEGRLVHVLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPGDLPPQGEDGSSVFLLPDGTWDRRVKDLERIVTKIKKQFKKRQAGAAAVRAASATPSAASTPAPMVPASGALRMADTAHPLAAQGSQEAAPLDERARMEAAVLSEADQAGVARVNELGRQIEGAKAKQDWTRVREALLTLEAEPMSLTILTATSIGRVVNKLKKAEDAGVALLGKGLVKKWKALVEG
Sbjct: 1 MLHPVEAAPGKLKKKKRLLKGDKWGSKVSKRAAPSPSWPSTSGLKKEKGGLLAGRGPLSSGKVAGPSQGKSEAFDADTWEACWQGIERREAVRDGVAWLLKHAASNSNSEKCEGLRTLPAVLDMVRLTRDPVRQEVLEAAHLPLEKWKVENAQEQWGPSQVRQGNGSGGAAGSLEGGRCAHQEDIGKATTQQTLIVAVRRIFSLERTGMYAQEESKRALLKAFVSVREGSERASSSPVPEAAHRSTWSIEDYLGWNPLHAPPPASLRDPFDPTGPRLSQQRVLALSVEWMMVLELSGLVADRSEGEEGRRRGGRGRGTGGRAEPEEREEDNGAVAVEDGGAASPKAATMEESEPQTAALAEEGRLVHVLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPGDLPPQGEDGSSVFLLPDGTWDRRVKDLERIVTKIKKQFKKRQAGAAAVRAASATPSAASTPAPMVPASGALRMADTAHPLAAQGSQEAAPLDERARMEAAVLSEADQAGVARVNELGRQIEGAKAKQDWTRVREALLTLEAEPMSLTILTATSIGRVVNKLKKAEDAGVALLGKGLVKKWKALVEG 736
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|676381265|ref|XP_009033911.1| (hypothetical protein AURANDRAFT_70922 [Aureococcus anophagefferens] >gi|323455687|gb|EGB11555.1| hypothetical protein AURANDRAFT_70922 [Aureococcus anophagefferens]) HSP 1 Score: 107.071 bits (266), Expect = 5.418e-20 Identity = 65/194 (33.51%), Postives = 100/194 (51.55%), Query Frame = 0
Query: 368 VLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGN-WPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPGDLPPQGEDGS 560
VL L +RPYRGPA + Y DQ L T VV+ L+ GEL + LLPHE+ F++EH+ + + +RDV VG ++ LR G+ + + ++ G+T+L+ Q QA + W + D +A + T+ A++ALL F G+GP L +D+L W+ D P DLP + D +
Sbjct: 369 VLAHLRTLRPYRGPADLPWDAYVDQCYLVTHVVFTLNNWGELALEPDLLPHEHAFIKEHIGIAIRERDVHLVGEYVECLRCFGATDADASVQLGITFLLNAQDQATHRW-----------DVDMDAYTSYHA------------TMVASQALLAHSFRGYGPGLLGAVDVLDKWRAADC---PEDLPVEHPDAA 536
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|950891992|ref|XP_014527735.1| (hypothetical protein JH06_3471 [Blastocystis sp. subtype 4] >gi|902862346|gb|KNB44292.1| hypothetical protein JH06_3471 [Blastocystis sp. subtype 4]) HSP 1 Score: 99.7525 bits (247), Expect = 1.089e-18 Identity = 60/194 (30.93%), Postives = 95/194 (48.97%), Query Frame = 0
Query: 368 VLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVA--PTLAATRALLVREFNGFGPLPLEVLDLLLAWQKED---ADPLPGDLPPQG 556
L+WLP +RPY+ ++ + DQ L T V++ LS+ G+LR+ LPHEY FL+EHL + + ++DV VG I LR+ G E N I G+ +L+ Q G+W N + G+ +VA T+ A +AL+ F GFG + +++ W + +P+P LP +
Sbjct: 198 FLRWLPFLRPYKSSLELPWKEFVDQCYLITHVIFTLSQWGQLRLQIQQLPHEYLFLQEHLPLMIQKKDVHLVGEFIQCLRIFGVEENNSSILDGLQFLLEEQNADGSW--------------DNQMMDGFHVDLA----YVAYHATMVAIQALIPPMFTGFGCMSESTEEIVSRWYSTEFLRCEPIPSPLPSEN 373
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|1032150322|gb|OAO14119.1| (Prenyltransferase [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 98.9821 bits (245), Expect = 2.093e-18 Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = 0
Query: 369 LKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGRGTGRDRFVAPTLAATRALLVREFNGFGPL 529
L+WLP +RPY+ ++ + D+ L T VV+ LS+ G+LR+ LPHEY FLREHL + L ++DV VG ++ LR+ G E +I GM +L+ Q G+W V E A + + T+ A +AL+ EF+GFG +
Sbjct: 197 LRWLPSLRPYKSSNELPWKEFVDECYLITHVVFTLSQWGQLRLQIQQLPHEYLFLREHLPLLLQKQDVHLVGEFVECLRIFGVAENASLILEGMHFLLEEQNADGSWDNKRKEMNVDE-----AYVAYHA------------TMVAIQALIPSEFSGFGCM 340
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|953490674|emb|CEG46328.1| (Transcription factor IIS, N-terminal [Plasmopara halstedii]) HSP 1 Score: 97.0561 bits (240), Expect = 2.499e-17 Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 0
Query: 368 VLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVL-GSHEENPMIRAGMTYLMRNQAQAGNWPAATT 480
+LK L + PY+GP + Y DQV T++++ L+ G LR LLPHEYFFLR HL L Q+DV + + ALR GS++ PM R GM +L+ +Q + G+WP+ T
Sbjct: 266 LLKHLGSIYPYKGPEDLSIQEYEDQVHFVTTLIFVLTNHGRLRCEIELLPHEYFFLRHHLVYHLAQQDVALLSEIMRALRCFEGSNDLVPM-RRGMAFLLLSQREDGSWPSGDT 378
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|566033929|gb|ETI56840.1| (hypothetical protein F443_00774 [Phytophthora parasitica P1569] >gi|568059731|gb|ETM56301.1| hypothetical protein L914_00707 [Phytophthora parasitica] >gi|570337626|gb|ETO85574.1| hypothetical protein F444_00775 [Phytophthora parasitica P1976] >gi|570998388|gb|ETP54618.1| hypothetical protein F442_00722 [Phytophthora parasitica P10297]) HSP 1 Score: 90.1225 bits (222), Expect = 3.370e-15 Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 0
Query: 375 VRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNW 475
V PY+GP + Y DQV L T++V+ L+ G LR LLPHEYFFLR H+ L Q+D +G ++ ALR +R GM YL+ Q + G+W
Sbjct: 273 VYPYKGPGDLSPQEYEDQVHLVTTLVFVLTNHGRLRCETNLLPHEYFFLRHHIVYHLTQQDAALLGESLRALRCFEGSANLVQMRRGMAYLLLTQREDGSW 373
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|566033930|gb|ETI56841.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|568059732|gb|ETM56302.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570337627|gb|ETO85575.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570998389|gb|ETP54619.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297]) HSP 1 Score: 88.9669 bits (219), Expect = 5.214e-15 Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 0
Query: 375 VRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNW 475
V PY+GP + Y DQV L T++V+ L+ G LR LLPHEYFFLR H+ L Q+D +G ++ ALR +R GM YL+ Q + G+W
Sbjct: 273 VYPYKGPGDLSPQEYEDQVHLVTTLVFVLTNHGRLRCETNLLPHEYFFLRHHIVYHLTQQDAALLGESLRALRCFEGSANLVQMRRGMAYLLLTQREDGSW 373
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|675162887|ref|XP_008890328.1| (hypothetical protein PPTG_00653 [Phytophthora parasitica INRA-310] >gi|568109634|gb|ETN24241.1| hypothetical protein PPTG_00653 [Phytophthora parasitica INRA-310]) HSP 1 Score: 88.5817 bits (218), Expect = 1.125e-14 Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 0
Query: 375 VRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNW 475
V PY+GP + Y DQV L T++V+ L+ G LR LLPHEYFFLR H+ L Q++ +G ++ ALR +R GM YL+ Q + G+W
Sbjct: 273 VYPYKGPGDLSPQEYEDQVHLVTTLVFVLTNHGRLRCETNLLPHEYFFLRHHIVYHLTQQNAALLGESLRALRCFEGSANLVQMRRGMAYLLLTQREDGSW 373
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|568029123|gb|ETM03054.1| (hypothetical protein L917_00677 [Phytophthora parasitica]) HSP 1 Score: 88.5817 bits (218), Expect = 1.165e-14 Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 0
Query: 375 VRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNW 475
V PY+GP + Y DQV L T++V+ L+ G LR LLPHEYFFLR H+ L Q++ +G ++ ALR +R GM YL+ Q + G+W
Sbjct: 273 VYPYKGPGDLSPQEYEDQVHLVTTLVFVLTNHGRLRCETNLLPHEYFFLRHHIVYHLTQQNAALLGESLRALRCFEGSANLVQMRRGMAYLLLTQREDGSW 373
BLAST of EWM28527.1 vs. NCBI_GenBank
Match: gi|567971613|gb|ETK96618.1| (hypothetical protein L915_00720 [Phytophthora parasitica] >gi|567999951|gb|ETL49981.1| hypothetical protein L916_00714 [Phytophthora parasitica] >gi|570961643|gb|ETP26622.1| hypothetical protein F441_00762 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 88.5817 bits (218), Expect = 1.207e-14 Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 0
Query: 375 VRPYRGPAQVEAAVYRDQVCLATSVVWALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLGSHEENPMIRAGMTYLMRNQAQAGNW 475
V PY+GP + Y DQV L T++V+ L+ G LR LLPHEYFFLR H+ L Q++ +G ++ ALR +R GM YL+ Q + G+W
Sbjct: 273 VYPYKGPGDLSPQEYEDQVHLVTTLVFVLTNHGRLRCETNLLPHEYFFLRHHIVYHLTQQNAALLGESLRALRCFEGSANLVQMRRGMAYLLLTQREDGSW 373 The following BLAST results are available for this feature:
BLAST of EWM28527.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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