Properties
Property Name | Value |
Product | Transcription factor IIS |
Orig transcript id | gnl|cribi|Naga_100009g96.570.mrna |
Orig protein id | gnl|cribi|Naga_100009g96.570 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002458.1 | supercontig | CM002458.1:810572..813597 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2067 ID=rna2067|Name=rna2067|organism=Nannochloropsis gaditana|type=mRNA|length=1748bp CCGTCCGCACTTGTTGACCCTCTCCCTCACGCGCACATCCATCATCACAT CGTGGAATGACAGTCAAGGGGGGCTTGGAGTCAGTGCGTGCCAACTTGCC GAGCCGACGGGATCATTCACCATCAGGCACGAACATTCGTGGCGGCAAAA ATATCTCAGATCCGGCCTAGGATGGATTTTGCTCTGGTTCAAGAATGGGA GCGGGAGGAGTCGCAGCGTGGCACGCCCTCGACCAAACCTGATGGGAGAG TCGTGTGCACCGCAACAAAAAGAAGACGGCCATTCCAAGCAGGAGACATG GTCGTTGTAATGGAACGGCATGACAGTTATTCACACGTGTACCTTGAGCC AGGGGGCATGTTTCAGAATCGTTTAGGGCATTTCCACCACGACGACATCA TCGGGAAACACGTTGGCGCAAAGGTCATGTCCAGGTCCGCAGGTGGGCGA TTTATACGCTTGCTATTGCCCTCTCCGGAGCTGTGGACGATGAGCATCAA GCAGCGCACACAGATTGTTCAAGACCTGGATCAGAGTATGGTTGTGTTTA AGCTTGGTCTGCGGCCAGGCATGCGAGTCCTGGAGTCTGGAACGGGCTCT GGGGCAATGTCACATGCAATTTTGCGCAGTATCAGTCCACATGGGCACTT ACACACATTTGAATTCAATGAGGCACGAGCGATAGACGCACAAGTGGATT TCGAGAGGAATCGAGTGAGCCATTTGGTGACGGTGATGCACGGAGACATA TGCCAGGATTTGAGTCTGTCAGATGAAGAGAGCACTATTGTATGTACCTC TGCGCACATGGAGACGGAAAGTGACGGTAAGGATCCACTGGGTGAGCATA ATGGCCTCGCCCCGAACGGGACAGCCGCTGCCTCCCAACCCGAGGCTCCC CCCCCCCTCGCCCATCCTCCCGCGGTTTCCGTCGCTCCAGTTGCACGGAC TCTACGTGGTCGGATAGACGCCGTCTTTCTGGATGTGCCGAGTCCCTGGC TGGCCATTCCCCTGGCCGCAGCAGTCTTGAAGGCGAACGCGCGCATCGCC ACGTATTCGCCATGTTTCGAGCAGGTTTTCAAGACTTGCGAGGCCCTGCG GGAGCATAACTTTCATTCCATTCGTACCATGGAGGTACGGCACAAGCAGT TTGAGCTCAGGCGGACGTGCATGCCGCATTTGGATTTCGGGGACGGGGAT AGCGTCGGGGTGGGGGAGGATCTGGGTGGGGCCGCGGAGAAGGGAAATGG GGTGCGAGGGGATGATCAGAACACCGCTCATGCCAGAGAGACAGGACCGA AAAAGTCCGAAAGTGAAGGCATGGAAGCATGGCGGAGTAAACGGAAGCAC AGAGAGGCGGAGGGCGGGAAAGATGCCCGCCCGTTCGCGAAAGCGCGTCC CGTCATGCGGGGCCACACAGCCTTCCTGACCTTCGCCGTCGCCGGTCTTC ACCCACCCAAGAGCCTAGGCCCGGGCGCGGTGGGACCGACCGTCCCTGCT CCCTGGATACCGACCTCGGGGCCGCCAGCACCGGCTCCGGACCCGGTCGA CGAGCTGGCCGCTGAGGCTTGAGCAGAAGGAATCGATCTCCTCTATGTAA CAAAAAAAACAGCAGAAGAAATCGATCTCCTCTATGTGACAAACGAAACA GCAGAAGGAATCGATCTCCCCTATGTGACAAAAGAAACAGCAGAAGGAAT CCATCTCCTCTATGTGACAAAAGAAACCAAATAACAAACAGGCGATTT back to topprotein sequence of rna2067 >rna2067-protein ID=rna2067-protein|Name=rna2067|organism=Nannochloropsis gaditana|type=polypeptide|length=736bp MLHPVEAAPGKLKKKKRLLKGDKWGSKVSKRAAPSPSWPSTSGLKKEKGG LLAGRGPLSSGKVAGPSQGKSEAFDADTWEACWQGIERREAVRDGVAWLL KHAASNSNSEKCEGLRTLPAVLDMVRLTRDPVRQEVLEAAHLPLEKWKVE NAQEQWGPSQVRQGNGSGGAAGSLEGGRCAHQEDIGKATTQQTLIVAVRR IFSLERTGMYAQEESKRALLKAFVSVREGSERASSSPVPEAAHRSTWSIE DYLGWNPLHAPPPASLRDPFDPTGPRLSQQRVLALSVEWMMVLELSGLVA DRSEGEEGRRRGGRGRGTGGRAEPEEREEDNGAVAVEDGGAASPKAATME ESEPQTAALAEEGRLVHVLKWLPCVRPYRGPAQVEAAVYRDQVCLATSVV WALSRGGELRIPALLLPHEYFFLREHLAVQLLQRDVLSVGRTIDALRVLG SHEENPMIRAGMTYLMRNQAQAGNWPAATTGAPVTEEEDRNARLGGYGGR GTGRDRFVAPTLAATRALLVREFNGFGPLPLEVLDLLLAWQKEDADPLPG DLPPQGEDGSSVFLLPDGTWDRRVKDLERIVTKIKKQFKKRQAGAAAVRA ASATPSAASTPAPMVPASGALRMADTAHPLAAQGSQEAAPLDERARMEAA VLSEADQAGVARVNELGRQIEGAKAKQDWTRVREALLTLEAEPMSLTILT ATSIGRVVNKLKKAEDAGVALLGKGLVKKWKALVEG back to topmRNA from alignment at CM002458.1:810572..813597- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2067 ID=rna2067|Name=rna2067|organism=Nannochloropsis gaditana|type=mRNA|length=3026bp|location=Sequence derived from alignment at CM002458.1:810572..813597- (Nannochloropsis gaditana) GAGAATAAAGCAGACTGAGAGTGGTTGACTCATCGTTGGATTTGATTCGC
AGCATCATAAGAGTAAAAATCGTTTTAGTGTCTTGATGCATCGACAGAGG
CTTGTCTACTGATGATAGGCTGCTCCTCCGAACACGGAGCTGCTTTGACT
TAATATCCGGGTTATGCCTTACTCTCCCGCCACGGCAAATAAATTTTGTT
GCCTTACAAAAGTACTGAAAATCATCGAAAGGTATTGCATTCGAAAGTAT
TTTCCTGTCCTCTCGTTTTTCCGCGGCGTTTTTCATGGGGTTCCCTGACC
TTCAAGTGACATGTCCGCCGACCCCTTCCTCCATTAGGCTACAACGAATG
CGAAGTTCGTTTTGCGATCGTAAATATAATTACCAAATTAATGTTATTGC
TGTGGCACAGGAAAACTGTGCGAATGGATCAGGTTTCAATTTGCCTGTAA
AATTATTAATCCGACGTGTTCTGTGACCTTTAATCGCTCACGCAGCCACG
GGTTGCCCAGTCCCCTACCTCTCGTTGCCTTGCTTTGTCAAATTGCATTC
GACTCTCTGCAATTTTCCTCTTTTTTGGGATATGAATCTAATACGACAGG
ATAAATAAGCACCTCGCGTGACGTGGGAACAATAGAATGCTGCATCCTGT
CGAAGCTGCACCGGGAAAGCTGAAGAAGAAGAAGCGTCTCCTGAAAGGGG
TAAGAGGAGGGATAGGGCATTTCCTGATTCCTTTCAATGGGAGCCGCAAA
GTTTACATTATCCACGCATGTCTACCCGCAATAAAAGGACAAATGGGGTT
CAAAGGTGTCGAAAAGGGCGGCTCCATCACCGTCTTGGCCGTCAACTTCC
GGACTGAAGAAGGAAAAAGGGGGTTTACTTGCCGGTCGCGGTCCTTTGTC
GAGTGGGAAAGTTGCGGGTCCTAGCCAGGGCAAGAGCGAGGCCTTCGATG
CAGACACCTGGGAGGCTTGTTGGCAGGGGATTGAACGACGTGAAGCAGTA
CGAGACGGAGTGGCATGGCTGCTAAAGCACGCGGCATCTAACAGTAACAG
TGAGAAGTGCGAGGGCCTGAGGACTCTTCCGGCGGTCCTGGACATGGTTC
GTCTAACCCGGGACCCCGTGAGACAGGAGGTGTTGGAAGCAGCACACCTG
CCTCTGGAAAAGTGGAAGGTGGAAAATGCACAAGAGCAGTGGGGCCCCTC
CCAAGTCCGCCAAGGCAATGGCAGCGGCGGAGCAGCCGGTAGTCTCGAGG
GAGGGCGCTGCGCCCACCAGGAGGACATTGGCAAGGCCACAACGCAGCAG
ACTTTAATTGTGGCAGTCCGTCGCATTTTTTCTTTGGAACGAACCGGGAT
GTATGCTCAGGAGGAATCCAAGCGAGCCCTGTTGAAAGCCTTCGTCAGCG
TGAGAGAGGGGAGCGAGCGAGCATCCTCGTCTCCTGTCCCGGAGGCTGCC
CACCGGTCCACATGGAGCATAGAAGACTATCTAGGCTGGAACCCGCTCCA
TGCCCCCCCCCCCGCGTCGCTCCGGGACCCCTTCGATCCGACGGGTCCCC
GGCTCTCCCAACAGCGCGTGTTGGCGCTGAGCGTGGAGTGGATGATGGTG
CTGGAGCTCTCAGGCCTGGTGGCGGACAGGAGCGAAGGGGAGGAGGGGCG
CCGGCGTGGAGGGAGAGGGAGAGGGACGGGAGGGAGAGCGGAACCCGAAG
AAAGGGAAGAAGACAACGGGGCTGTTGCCGTGGAAGACGGAGGCGCGGCC
TCTCCCAAGGCCGCTACCATGGAGGAATCCGAGCCGCAGACGGCAGCCTT
GGCCGAGGAAGGTCGACTCGTCCATGTCCTCAAGTGGCTGCCCTGTGTTC
GCCCTTACCGGGGCCCCGCCCAAGTGGAGGCTGCCGTGTACCGCGACCAA
GTCTGCCTGGCGACCAGCGTGGTGTGGGCCCTGAGTCGGGGCGGGGAGCT
CCGCATTCCGGCCCTCTTGCTCCCGCACGAGTACTTCTTCTTGCGCGAAC
ACTTGGCTGTGCAGCTTCTTCAGAGGGACGTCCTGTCCGTGGGCCGGACC
ATCGATGCCCTCCGTGTGCTCGGGAGCCACGAGGAGAACCCCATGATCCG
CGCCGGCATGACCTACTTGATGCGTAACCAGGCCCAGGCGGGAAATTGGC
CGGCGGCCACGACCGGCGCGCCCGTGACGGAGGAGGAGGACAGAAATGCC
AGGCTAGGGGGATACGGCGGTCGAGGCACAGGCCGGGATCGATTCGTGGC
CCCTACCCTGGCGGCCACGCGCGCGCTGCTCGTGCGGGAGTTCAACGGTT
TCGGACCGCTTCCTCTCGAGGTCCTGGACCTGCTGCTGGCGTGGCAGAAG
GAGGACGCAGACCCTCTCCCGGGCGACCTCCCGCCGCAGGGAGAGGACGG
GAGCAGCGTCTTCCTGCTGCCCGACGGGACGTGGGACCGCCGGGTCAAGG
ATTTGGAGCGCATCGTCACAAAAATAAAGAAGCAATTCAAGAAGAGACAG
GCTGGCGCCGCTGCCGTCCGTGCGGCGTCTGCAACTCCTTCTGCTGCCTC
TACCCCCGCTCCTATGGTCCCTGCCTCTGGAGCCCTTAGGATGGCGGACA
CAGCCCATCCACTAGCGGCCCAAGGGAGTCAGGAGGCCGCCCCCCTGGAC
GAGCGTGCGAGGATGGAAGCCGCCGTGCTCTCCGAAGCGGACCAAGCCGG
CGTGGCGCGGGTCAATGAGCTGGGTAGACAGATTGAGGGGGCGAAGGCCA
AGCAGGATTGGACGCGGGTGCGGGAGGCGCTGCTGACCCTGGAGGCTGAG
CCCATGTCTCTGACCATCTTAACCGCCACGTCGATCGGGCGAGTAGTGAA
CAAGCTGAAGAAGGCGGAGGACGCGGGCGTGGCGCTCCTAGGGAAGGGCC
TGGTGAAGAAGTGGAAGGCTTTGGTGGAGGGCTGAGGGGCCGAAGAGGGG
GGAAGGGGACAGACCAGATCCTCGGGGGCAAGAGCCATGCTCGACAAAGC
AAGTAATAACTTTGATAGGAAATCGC back to topCoding sequence (CDS) from alignment at CM002458.1:810572..813597- >rna2067 ID=rna2067|Name=rna2067|organism=Nannochloropsis gaditana|type=CDS|length=4422bp|location=Sequence derived from alignment at CM002458.1:810572..813597- (Nannochloropsis gaditana) GACAAATGGGGTTCAAAGGTGTCGAAAAGGGCGGCTCCATCACCGTCTTG GCCGTCAACTTCCGGACTGAAGAAGGAAAAAGGGGGTTTACTTGCCGGTC GCGGTCCTTTGTCGAGTGGGAAAGTTGCGGGTCCTAGCCAGGGCAAGAGC GAGGCCTTCGATGCAGACACCTGGGAGGCTTGTTGGCAGGGGATTGAACG ACGTGAAGCAGTACGAGACGGAGTGGCATGGCTGCTAAAGCACGCGGCAT CTAACAGTAACAGTGAGAAGTGCGAGGGCCTGAGGACTCTTCCGGCGGTC CTGGACATGGTTCGTCTAACCCGGGACCCCGTGAGACAGGAGGTGTTGGA AGCAGCACACCTGCCTCTGGAAAAGTGGAAGGTGGAAAATGCACAAGAGC AGTGGGGCCCCTCCCAAGTCCGCCAAGGCAATGGCAGCGGCGGAGCAGCC GGTAGTCTCGAGGGAGGGCGCTGCGCCCACCAGGAGGACATTGGCAAGGC CACAACGCAGCAGACTTTAATTGTGGCAGTCCGTCGCATTTTTTCTTTGG AACGAACCGGGATGTATGCTCAGGAGGAATCCAAGCGAGCCCTGTTGAAA GCCTTCGTCAGCGTGAGAGAGGGGAGCGAGCGAGCATCCTCGTCTCCTGT CCCGGAGGCTGCCCACCGGTCCACATGGAGCATAGAAGACTATCTAGGCT GGAACCCGCTCCATGCCCCCCCCCCCGCGTCGCTCCGGGACCCCTTCGAT CCGACGGGTCCCCGGCTCTCCCAACAGCGCGTGTTGGCGCTGAGCGTGGA GTGGATGATGGTGCTGGAGCTCTCAGGCCTGGTGGCGGACAGGAGCGAAG GGGAGGAGGGGCGCCGGCGTGGAGGGAGAGGGAGAGGGACGGGAGGGAGA GCGGAACCCGAAGAAAGGGAAGAAGACAACGGGGCTGTTGCCGTGGAAGA CGGAGGCGCGGCCTCTCCCAAGGCCGCTACCATGGAGGAATCCGAGCCGC AGACGGCAGCCTTGGCCGAGGAAGGTCGACTCGTCCATGTCCTCAAGTGG CTGCCCTGTGTTCGCCCTTACCGGGGCCCCGCCCAAGTGGAGGCTGCCGT GTACCGCGACCAAGTCTGCCTGGCGACCAGCGTGGTGTGGGCCCTGAGTC GGGGCGGGGAGCTCCGCATTCCGGCCCTCTTGCTCCCGCACGAGTACTTC TTCTTGCGCGAACACTTGGCTGTGCAGCTTCTTCAGAGGGACGTCCTGTC CGTGGGCCGGACCATCGATGCCCTCCGTGTGCTCGGGAGCCACGAGGAGA ACCCCATGATCCGCGCCGGCATGACCTACTTGATGCGTAACCAGGCCCAG GCGGGAAATTGGCCGGCGGCCACGACCGGCGCGCCCGTGACGGAGGAGGA GGACAGAAATGCCAGGCTAGGGGGATACGGCGGTCGAGGCACAGGCCGGG ATCGATTCGTGGCCCCTACCCTGGCGGCCACGCGCGCGCTGCTCGTGCGG GAGTTCAACGGTTTCGGACCGCTTCCTCTCGAGGTCCTGGACCTGCTGCT GGCGTGGCAGAAGGAGGACGCAGACCCTCTCCCGGGCGACCTCCCGCCGC AGGGAGAGGACGGGAGCAGCGTCTTCCTGCTGCCCGACGGGACGTGGGAC CGCCGGGTCAAGGATTTGGAGCGCATCGTCACAAAAATAAAGAAGCAATT CAAGAAGAGACAGGCTGGCGCCGCTGCCGTCCGTGCGGCGTCTGCAACTC CTTCTGCTGCCTCTACCCCCGCTCCTATGGTCCCTGCCTCTGGAGCCCTT AGGATGGCGGACACAGCCCATCCACTAGCGGCCCAAGGGAGTCAGGAGGC CGCCCCCCTGGACGAGCGTGCGAGGATGGAAGCCGCCGTGCTCTCCGAAG CGGACCAAGCCGGCGTGGCGCGGGTCAATGAGCTGGGTAGACAGATTGAG GGGGCGAAGGCCAAGCAGGATTGGACGCGGGTGCGGGAGGCGCTGCTGAC CCTGGAGGCTGAGCCCATGTCTCTGACCATCTTAACCGCCACGTCGATCG GGCGAGTAGTGAACAAGCTGAAGAAGGCGGAGGACGCGGGCGTGGCGCTC CTAGGGAAGGGCCTGGTGAAGAAGTGGAAGGCTTTGGTGGAGGGCTGAAT GCTGCATCCTGTCGAAGCTGCACCGGGAAAGCTGAAGAAGAAGAAGCGTC TCCTGAAAGGGGACAAATGGGGTTCAAAGGTGTCGAAAAGGGCGGCTCCA TCACCGTCTTGGCCGTCAACTTCCGGACTGAAGAAGGAAAAAGGGGGTTT ACTTGCCGGTCGCGGTCCTTTGTCGAGTGGGAAAGTTGCGGGTCCTAGCC AGGGCAAGAGCGAGGCCTTCGATGCAGACACCTGGGAGGCTTGTTGGCAG GGGATTGAACGACGTGAAGCAGTACGAGACGGAGTGGCATGGCTGCTAAA GCACGCGGCATCTAACAGTAACAGTGAGAAGTGCGAGGGCCTGAGGACTC TTCCGGCGGTCCTGGACATGGTTCGTCTAACCCGGGACCCCGTGAGACAG GAGGTGTTGGAAGCAGCACACCTGCCTCTGGAAAAGTGGAAGGTGGAAAA TGCACAAGAGCAGTGGGGCCCCTCCCAAGTCCGCCAAGGCAATGGCAGCG GCGGAGCAGCCGGTAGTCTCGAGGGAGGGCGCTGCGCCCACCAGGAGGAC ATTGGCAAGGCCACAACGCAGCAGACTTTAATTGTGGCAGTCCGTCGCAT TTTTTCTTTGGAACGAACCGGGATGTATGCTCAGGAGGAATCCAAGCGAG CCCTGTTGAAAGCCTTCGTCAGCGTGAGAGAGGGGAGCGAGCGAGCATCC TCGTCTCCTGTCCCGGAGGCTGCCCACCGGTCCACATGGAGCATAGAAGA CTATCTAGGCTGGAACCCGCTCCATGCCCCCCCCCCCGCGTCGCTCCGGG ACCCCTTCGATCCGACGGGTCCCCGGCTCTCCCAACAGCGCGTGTTGGCG CTGAGCGTGGAGTGGATGATGGTGCTGGAGCTCTCAGGCCTGGTGGCGGA CAGGAGCGAAGGGGAGGAGGGGCGCCGGCGTGGAGGGAGAGGGAGAGGGA CGGGAGGGAGAGCGGAACCCGAAGAAAGGGAAGAAGACAACGGGGCTGTT GCCGTGGAAGACGGAGGCGCGGCCTCTCCCAAGGCCGCTACCATGGAGGA ATCCGAGCCGCAGACGGCAGCCTTGGCCGAGGAAGGTCGACTCGTCCATG TCCTCAAGTGGCTGCCCTGTGTTCGCCCTTACCGGGGCCCCGCCCAAGTG GAGGCTGCCGTGTACCGCGACCAAGTCTGCCTGGCGACCAGCGTGGTGTG GGCCCTGAGTCGGGGCGGGGAGCTCCGCATTCCGGCCCTCTTGCTCCCGC ACGAGTACTTCTTCTTGCGCGAACACTTGGCTGTGCAGCTTCTTCAGAGG GACGTCCTGTCCGTGGGCCGGACCATCGATGCCCTCCGTGTGCTCGGGAG CCACGAGGAGAACCCCATGATCCGCGCCGGCATGACCTACTTGATGCGTA ACCAGGCCCAGGCGGGAAATTGGCCGGCGGCCACGACCGGCGCGCCCGTG ACGGAGGAGGAGGACAGAAATGCCAGGCTAGGGGGATACGGCGGTCGAGG CACAGGCCGGGATCGATTCGTGGCCCCTACCCTGGCGGCCACGCGCGCGC TGCTCGTGCGGGAGTTCAACGGTTTCGGACCGCTTCCTCTCGAGGTCCTG GACCTGCTGCTGGCGTGGCAGAAGGAGGACGCAGACCCTCTCCCGGGCGA CCTCCCGCCGCAGGGAGAGGACGGGAGCAGCGTCTTCCTGCTGCCCGACG GGACGTGGGACCGCCGGGTCAAGGATTTGGAGCGCATCGTCACAAAAATA AAGAAGCAATTCAAGAAGAGACAGGCTGGCGCCGCTGCCGTCCGTGCGGC GTCTGCAACTCCTTCTGCTGCCTCTACCCCCGCTCCTATGGTCCCTGCCT CTGGAGCCCTTAGGATGGCGGACACAGCCCATCCACTAGCGGCCCAAGGG AGTCAGGAGGCCGCCCCCCTGGACGAGCGTGCGAGGATGGAAGCCGCCGT GCTCTCCGAAGCGGACCAAGCCGGCGTGGCGCGGGTCAATGAGCTGGGTA GACAGATTGAGGGGGCGAAGGCCAAGCAGGATTGGACGCGGGTGCGGGAG GCGCTGCTGACCCTGGAGGCTGAGCCCATGTCTCTGACCATCTTAACCGC CACGTCGATCGGGCGAGTAGTGAACAAGCTGAAGAAGGCGGAGGACGCGG GCGTGGCGCTCCTAGGGAAGGGCCTGGTGAAGAAGTGGAAGGCTTTGGTG GAGGGCTGAATGCTGCATCCTGTCGAAGCTGCACCGGGAAAGCTGAAGAA GAAGAAGCGTCTCCTGAAAGGG back to top
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