rna2054, rna2054 (mRNA) Nannochloropsis gaditana

Overview
Namerna2054
Unique Namerna2054
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2721
Alignment locationCM002458.1:784726..786756 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g110.636.mrna
Orig protein idgnl|cribi|Naga_100009g110.636
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:784726..786756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100009g110gene1965Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28593.1cds2046Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2054rna2054-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2054 ID=rna2054|Name=rna2054|organism=Nannochloropsis gaditana|type=mRNA|length=2721bp
CATCTCATGCCAATGCTTTCGATTTCAATCTACGCACCCTTTAACCACAG
GTCTGAATTTCCAGGTGCATCAAATCTGTCGAGGGCCATCCCGACAGTGA
AAGAGCTGGTCGGACTTGCCCCGGGAAGAGATCTTCAGAACGTGTGGGGT
CTCTGCCCATGGGGCGCAACCTTATGGCTGGTGCAGCGACCCTCGAGCAG
TCTTTCTCTAGACAAGCAGGTGAAAAGGCCCCTCACACGTCGCGGGACGG
AAGAGGCGTTGCAGACCATGGCACTTCAAATTCCTCTTCCCGGCCGCGGC
CTCCCACTCCCTCGGGCCGGACCAACACGTCTGTCGGCAAATTGATGGGC
GACTTCAACCCTACCGAGAACTTTGCGTCATTTTCAACCATTCCGTCGTT
CCTTGTGACCTCGACAGTGGCGCAGGAGGAAGGTTTGTCGGACGACAGCT
TTTCCATGGGATCCACGTGCTCCTCCTCCTCCTCCCCTTCCTCCCTACCC
CGCTCCCCCTCTCCCGCCGTGTCGGCGCCTTCTTCCTCGCCTTCCTCGCG
TCCATTGAAATACCCCTGGTCCGTTGCTGGTGCTGCCGTGGCGGCCGCTA
CAGGCGCCGCAAACGCAGTGGCAGCGTCGTGGAGGCAGGGTACGCCACCC
GTCTCCACCTCTGCGGGCCATCGCCCAGCCGCTTTTCCCGGTCGGAGCCC
GCACGGCCCCAGCAGCTACGACTCGTGCATCAACGTCCAAAGCGACTCAT
CGGCCCTCGCGGACCCTACCGCCCAGGCAGTACCCGGCCAAGACGCAGCC
TTCTCCCCACGCCTCCCCCCACGGCCCCCCAAGCCGAGCGGACGAAGGGA
GGCAGCCGCCCGCCTTGCCGCCACCTACGACGTGGGAGGGGCTGACTACG
CGCCATCCGCCTCCCTCGATTTCCCCTCGCGCGTGGAGGCCGGCCAAGGC
CAGGCAGGGCTGGGCTCCGCGTATGACAGTCAGGCGCCGGGATGGGCGGG
CAAGGAATTGCACAGGGGCAGGAGGCGCGGCCAGCCCCCCCCCCGGAAGC
ACTGGACGGATGCCTTGCCCGCCGTCCTCGACCCCCGCAAGTACACGCGT
CGACAGGCGGCGGTGTGCCTGATCATGACGACCCTGGCGCTGATCGTGAT
GATCGTGGTTCTCAGCATGGCGGCCCGGAGGACGATCGAGGTGGAGGGGC
TCCTCCCGGGGGGAGACCAAGGCGCGGCCGTGACGGGCGTGTATCGGAAT
CTCTTCACAGAGCTCATGGCCAAGACGCCAGCGGAGTCGGACGTCAAGGT
CCAAGAGGCCTACGCCCACCTCTTCCACGGCGACCCAGAGACAGAGGCCC
TCTATGTGGAGGTGGAGCCCAACATGGCGCAGATCATCAACACAGAGAGC
GACATGGTGACGAGCGAGGGCATCTCGTACGGGATGATTACCTGCGTGCA
CATGGACGAGCAGGAGCCTTTCAACAGGCTCTGGAACTGGGCACGCTTTC
ACATGCAGCACACGGCAGGGACATTTGCCAGCTTCTTCGCCTGGCGCGTG
ACGAAGGGCGGCCTCCTGGTGGACGCCAAGGACGTAATTCCAGCGCCAGA
CGCCGAGGCCTACATCGCCATGGCCCTGATCACTGCCCATCGAAAGTGGG
GCTCCACGCCCGCTTACCCGTACAAGGCAGAGGCCCTGCGTCTCCTCCGC
GTCATGGGCCAGTGGCAGCGCGGATTCTTCTCCCGGGACGGGAAGGCGAC
CTTCAATCCGACGGACTGGGGCTCCACGCACTCCAACCCTTCCTACCACC
TGCCCCACTTCTACGAGGCCTTCGCTCGCTTCATGGCCAATGAAGGAGAG
TCCCGCGCGTCGGGGTTTTGGTCGGGCGCGGCCCGCAAAAGCCGCTTTTA
TTTCCACGTGGCGTCGAACAAGAAGACAGGGCTGATGCCCGACTACACGA
CCCTGGACGGAAAGCCTGCCCCGGACCCGAATCTCGGGGGACACACCAAC
TTCCAGTGGGACGCCTGGCGTGCCCCCGCCAATGTGGCAGTGGACTGGGC
CTGGTGGAACGCGGACGGGTGGCAGCCCAAGTTTGCGGATCGGATCTTGG
CTTTCTTTGCCTCCCAGGGGCCGGAGTACGCGAGTCAGTACACGACGGAC
GGGCAGGTGGCGGATAATAACACGGGGCACGACCCCGGTCTGGTGGCGAT
GAACGCCGTGGTGGTGCTGGCGGCGAGGGATCAGGCCCTGAAACCCTCCT
TTGTGCGCGAGCTGTGGGACCTGCCCATACCCTCGGGCAAGGGCCGGTAC
TATCCTGCCATGCTGTACATGATGTCCCTGCTGCACTGCTCGGGGAAATT
CAAGGCGTACTTCTGAGGTAATCTATGCCAGAGAGGACGACGGGTGCAGG
CGAGGAAGGTAGTATCGCTCGACAGCGTGGCCCTGTGCAAGGGTCCTTTG
TCAATATTGTTGTTCCATATAGATGTTTGTACGGGAAGATACATGTAGTT
AGGGTTAGGGTTAGGGTTAGGACAGGGGTGTCAGGGGACGGGGTGACGGG
GGCTGTGCCGGGAGGACTGATGGGGACGGGCGTTCTGTACTTGGACGCCG
CCAGGTCTTGTGAAGACTTTACTGCCACACACACACACACATGCATTAAG
AGCATGGAGGGGTGACGGCTTGAGTGTGCACATGGTGATTGTCCATTACA
AAGCCCTATATATATATATAT
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protein sequence of rna2054

>rna2054-protein ID=rna2054-protein|Name=rna2054|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MFAACRDGKPRESETMKSIRRHLVPFSFTGRGRRGRGVLRRQRGSSPAGS
LRPAARTPTAVRCPRAGRPGSLRPRRTELSGLPAGEPRQRGRLHFLVREP
PAVPAPGSVSVTLGGGRCPRVVDRSVMGVKKVAALSPSGTRWERLDGGMG
SDHLEEF
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mRNA from alignment at CM002458.1:784726..786756-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2054 ID=rna2054|Name=rna2054|organism=Nannochloropsis gaditana|type=mRNA|length=2031bp|location=Sequence derived from alignment at CM002458.1:784726..786756- (Nannochloropsis gaditana)
CAAGAGCGCTCGGACGCAAGTCCTTGCCACTGTAGCAACACCACCAAGGC
GTGGCTTGTCCGTGAGATAGATTGTGTGCATGTGTGGTACATTGTGAACC
CTTTGCAGGTGTAGGCTTCGTGTCCTATGCCCTGTGGCTCCATACAGGGC
AAGTTATCTTGGGTCTGCGCCCGTGGCCGGCACCTACCGTAGTAACCAAC
AAGGCGCCGCCACCTCACCCGTTCACTTCGAAAATACAACTTCCCCACCC
GCGCTTCCACAGCCAGTCCTTTCACTTTTTGACAGCAACCTTCACTTTAC
TCCATCGATATGGCTCGGTAAGTCCTCGTTTTGAACACAACTGGTTGAAA
TGTGGGGGGGGATGCAGGGCGGGCGGCATCTGGAAGGATTCGGGGAGCTT
GGAACGGAGTGCGCTATCTTTTCACAACGCGGACGGGCATGAAGCTGAGT
TACAGCAAAGATAACGATAATCTTTGAAAGGAAATGCGTAGCGTAGTCTG
AGCTTAGAGTACTTCCTGTAGGGACGGGTAACATTGAAGGGGGGGACGGG
AGTCCTCCGCTCGCCTGCCTTTCCCTCCGAATCTGCCCGACTTGTCCTGG
GATGCCAAAGGGGCAAGGCTTTTGGCTTTCAGACACAGTACGCGCACGTG
AACGTGCTGGTTCCTCCGGACCCTCACATCTCCCTTCCATGATCTCATTT
CTTAGTTCCCGAAGCAGCCGCCCCGCCCCTGCTCGCGCCCCTGCCCGGGC
TCCCCCCCGCCCGTCCTCCGTGCCTGCGGCACCGCAACGGTAAGCGCTTA
AAGGGAAAGAGAACAGGTATGCATCACATGCAGAAGCCTAATCATGTCCT
ATTCTTGTCTCGTTCTTGTTCGTCAGTTCCGCGCCTCCGGCTCCGCACCA
GCCCCAGCAAGGTACGGACAGATAAAGCTCCTCTTGGATGTGCTGACCCG
TTTCACACCCTCGCTGTGTGTCGCTGGGAGAACCTGGGGGTTTTGGCTTA
CCTTGTCGCCTTTTTTTTTTTCATACCGTGTCCTCACGTAGGCGGAGGAA
TGATGAGCGGATTCGCCTCAACTATTGCCCAGGGATTTGCCTTCGGGACA
GGGAGTGCTGTCGCGCACAGGGTAAGTCGCTGTTTCAGGACCATTCTTGA
CGCACCCCAGTGTGGTTGCACTCGTTGTAGCGGTCTCTTACGTAGAAAGC
TTGTTCGCAGTGGCGACCGTGTGCGTGGGAACGTTGCGGCATAGCGGTTT
GAAGGGGGCTCAGATGTTTGCTGCTTGTCGGGACGGAAAGCCTAGAGAAT
CCGAAACCATGAAATCAATCCGACGACACCTTGTTCCTTTCTCCTTCACA
GGCCGTGGGCGCCGCGGCCGGGGCGTTCTCCGGCGACAGCGAGGCTCCTC
ACCAGCAGGAAGCCTACGCCCAGCAGCCCGCACACCAACAGCAGTACGGT
GCCCCCGCGCAGGGAGGCCAGGGTCCTTGCGCCCTCGACGGACAGAACTT
TCAGGCCTGCCTGCAGGCGAACCCCGGCAACGTGGACGCTTGCACTTTCT
TGTACGAGAGCCTCCAGCAGTGCCAGCGCCAGGCTCAGTTTCAGTAACTC
TGGGAGGAGGCAGGTGTCCTAGAGTGGTGGATAGGTCGGTAATGGGAGTG
AAAAAGGTAGCAGCTCTTAGCCCGAGTGGTACACGATGGGAGCGGTTGGA
TGGGGGAATGGGATCAGATCATCTAGAGGAATTTTAGGGTTAAATCTTGT
GATGTGGTGATGGTCCAGGAGGCGAGAGAAAAGGATAGGGATGAGATGGA
CGGATCGTGGTAACTCGGGTCACCTTGCCGCAGCTTTCCTGGTGCTGCGA
AGAGAGGGAAAGTCCGTTTAATTATACGCGGTGGATGTGGGCCAAAAACA
TACTATCGTACACGATCTTGGAAGATCTTTTGAAATGCTTGCCCTTTGCT
TTTTCTTCTGGCTAGTCTCATACCCGCTCTTCGCGAATACACTTTTCACA
TGACAACTCGTGCGGATCCCAATGCGACTTG
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Coding sequence (CDS) from alignment at CM002458.1:784726..786756-

>rna2054 ID=rna2054|Name=rna2054|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at CM002458.1:784726..786756- (Nannochloropsis gaditana)
ATGTTTGCTGCTTGTCGGGACGGAAAGCCTAGAGAATCCGAAACCATGAA
ATCAATCCGACGACACCTTGTTCCTTTCTCCTTCACAGGCCGTGGGCGCC
GCGGCCGGGGCGTTCTCCGGCGACAGCGAGGCTCCTCACCAGCAGGAAGC
CTACGCCCAGCAGCCCGCACACCAACAGCAGTACGGTGCCCCCGCGCAGG
GAGGCCAGGGTCCTTGCGCCCTCGACGGACAGAACTTTCAGGCCTGCCTG
CAGGCGAACCCCGGCAACGTGGACGCTTGCACTTTCTTGTACGAGAGCCT
CCAGCAGTGCCAGCGCCAGGCTCAGTTTCAGTAACTCTGGGAGGAGGCAG
GTGTCCTAGAGTGGTGGATAGGTCGGTAATGGGAGTGAAAAAGGTAGCAG
CTCTTAGCCCGAGTGGTACACGATGGGAGCGGTTGGATGGGGGAATGGGA
TCAGATCATCTAGAGGAATTTTAG
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Synonyms
Publications