|
Properties
Property Name | Value |
Product | tRNA-splicing endonuclease |
Orig transcript id | gnl|cribi|Naga_100182g12.952.mrna |
Orig protein id | gnl|cribi|Naga_100182g12.952 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002458.1 | supercontig | CM002458.1:771442..773371 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2049 ID=rna2049|Name=rna2049|organism=Nannochloropsis gaditana|type=mRNA|length=2049bp ACACACACTGCACAACAGTTCTTCATGTCTTGTCCTTTCCTTGTTCGACG CCAGCCGTCGTCTTGTTGTCGCCAGGCCTGCTGCCGTGATATTGAAACAG TGACGGTCGACATCGAGGCAGGAGGTGGCTGGCTGGTGGGAATCGGTATG AGTGTTCTTACATTCGGCGCATCTAACGCGTCAACCTCATCGGCGCGCAT TTCTTCATATTTACAGGCATGGTCAACTGCAATGCGAGAAATCGTGATGT GATTTCCCTCTCAAAACATGTCGCGGCCACGGCTTCACCCAAAACTTCTA CCTCCACCTCCTCCTCCTCCCCGTCTTCTTCTACTTCTTCTTTCCCCTCC TCCTCCTCCTCCAATCTCTCTCCACCTCCAAGCGCCGTGCAAGCATCTCC TTCCTTTGTGAGCCTTCCAAGAATGGTACCTCCCAATGCCACGATCACTC TAGGGCACAAAGGGGTGCCCGTGCATGAGTTGCCGGAAGAGGCTCGGGTC CGTGTACCACTCTGCAGTGCGCGCGGGAAGGTATGCGTCGCAGGCATAAA GCGAAAGCTTTCTGATGGCGGTGCGAAGCTATGGCAAGAAGAGAATGCTG AAAAGACGAATGTGGGGATACTGCGCCCAAGTCACGACGCCTGGGGCATT AAAAAAATTGTGTTCATTTACTGCGATGACTTCTTGCGGCGATGCTTCGA GATGCCATGGTTCCATGATCCGGAATGGCAAGCCCTGCTTCTGCCAGTAT TTCAAGCCCTTAATGTAGCTCCACGCATGGTCGTACGCTGCCTCCTCGCT TCCATGCCTCCGGGCATTGCAATCCCCCCCCACCACGACACCGGCTACTG GGTGCACTATTCACACCGCATTCATCTCCCCATCGAGACTGATCCTGCTC GTATCGTGTTCCGAGTGGGGCCTAGCAAGGATCGCCTTCAGAGGTACGAC CTCCCGGAAGGCTGCTTGGTGGAGCTGAACAACCAAGCGAAGCACAGCGT GGACAATCTATGGGACCGGTCTCGCGTGCATTTAATTTTGGATTATTTGG AAAAGGACAGCATCGAGAGGAGTATCCTGCCCCCTGGCGCCAAACTACAT CAGACTCGACGATCCATAGATCTAGAAAGCGAGCATGGATCCCGGCCATG CCCGAGCTTTCTGATCCTGGGTGCCCAGAAAAGTGGGACCACCTCTTTGT ACGAATACCTGTGCCAGCATCCCTTGGTCCTGAGAGCAAGGCGCAGGGAG ACGCATTACCTGGACTGGCGGTGGCGGCGAGAGGAACATTTGACGTGGGA AGATCACCGAGAAACCTACTTGCGTTTTTTCCACGCGGCTTTGCTGAACG AGAACCCATCTTGTATGACAGGCGAGTCCACGCCCAGTTACCTCCTGCAC AGCGACATTGTCTTGCCCCGTGTTCGCAAGTTGGCACCCACTGCCAAGTT GTTGGTGATCCTGCGCTGTCCCGTCGCCAGGGCATATTCCCAGTACCAGA TGGTGACCGACCCGGAGGGCAGCGTGGAGCAGAAGAAGGCTCGGGGCAGT CACTGGTTGGGAAAGTCCTTCGAGGAGGTTGTTGAGGCCGAGATGCAAGA CCTGGAGAGGCACAGAGTTCATCCGACCATGAACTATCAGGAGTTTAAGG ACGGGTATTTGTCTTCGCGGCCCCTGGGCCATGGGAGCCACTCGCTCTTA GGTCGAGGATTGTATGCCCTGCAGCTGCAGCCGTGGCTCGAAGCATTCGG CCGAGATCAGTTGATGGTTATGTTCATGGAAGACATGGCAAGTCATAACG CTGTGCAGGCACAATTAGGAAAGGTGTTTGATTTTCTGGGTTTACCACCG CATTCCATCATTGATACGCATGCTAAGAATACACGGGCATATACGCCAAT GGACGAGAGAACAAAGGCTAGACTGAGTGCTTTTTATGCACCTTTTAACC AGCAGCTTTTCCAAATTTTAAATGTTCACGAGCGAAGGTGGGAGGCGCGA GAGTAGTTTAAAATATGTAAAGCAAGGAATAAAGCAATCCTAGTAATCA back to topprotein sequence of rna2049 >rna2049-protein ID=rna2049-protein|Name=rna2049|organism=Nannochloropsis gaditana|type=polypeptide|length=340bp MEVDESVGHLLAVGQLSEREGEEGDAHEEELSKERHRNEEFEEEDEEEGL PLVAADDVLGNLQVWARTLERPPKGNLKTYCEGLWRPDKQLCRIIKTRGN DLRSMGFPYEGDTHLFPEETLYLVERCKLEVGNLTTPELYEAVDLQHYLT YAYFRQTSLIVFRAEPSCPVGVAFEAYAPSSQFRKTAREHPIFYIMYGGT RDPVPSEEELMAVFKWAKGVPVKYAMVSGDGGVFAVNIAHWPLENKTQTD TRGKAAAATVVSCEQERGKEGDEDTEGRRHKLCRKDRREMERQRHQEALR SKEQECHDLQSGNDEKEGLQENAGESTSETHCNLPNLAKW back to topmRNA from alignment at CM002458.1:771442..773371- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2049 ID=rna2049|Name=rna2049|organism=Nannochloropsis gaditana|type=mRNA|length=1930bp|location=Sequence derived from alignment at CM002458.1:771442..773371- (Nannochloropsis gaditana) CCTATTATTTTTAAGGGATGGGGGATGGGTTGACCTGTGTCTTCCCTGAG
GACGATGATATGAATCGGCGGCTGGGAGCTACGGGCTCATTGGTGAACCG
GAGGGGGGAGGTTAAGCTAACTTGTCTATGTCGTGGCCAAGCCCGCCCGG
ACAAATTGTGTGCTAGAATTTATCGCCCTGCAAGCCTGGCTGGAAATGAT
CAAAGTTAAATAATACATGTCAATTGCTTGTTGAGTTAAAAGCTTGTCAC
AATGGCGCGACCGGGAACGTTTAGACTTCTCGAGGGGGGACATCTTTCGT
GACGTCCATTAAGCGACTTTCTAGAGTACATCAATCGAACTCAACTGAAG
GCCAACTTCTCGCAAATAAAATAGTCTAAATAGTTGCTATGGAGGTGGAT
GAATCTGTCGGACACCTCTTGGCCGTGGGGCAGCTGTCCGAAAGGGAAGG
CGAGGAAGGGGATGCGCATGAAGAGGAACTGTCCAAGGAGCGGCATCGAA
ATGAGGAGTTCGAGGAAGAGGATGAAGAGGAAGGGCTACCGCTAGTGGCT
GCGGATGATGTACTTGGCAATTTACAAGTGTGGGCACGCACATTGGAACG
TCCACCGAAGGGAAATTTGAAGGTAGGAGTCTTTGGTGGATTTGTTTACC
TAGCCTCGGTAAAGCAAAGACAGACTGAAACATTATTGCGGAGCCTGATG
ATAATCTCTATTCGTATTTTTTTGTTTTTGGTCTTCTGCTAATATGCGGT
GACTCAAAGACCTACTGTGAAGGGCTTTGGCGTCCCGACAAACAACTTTG
CCGCATCATAAAAACACGTGGGAACGACCTTCGCTCGATGGGTTTTCCTT
ACGAAGGAGATACGCACTTATTCCCGGAAGAAACCCTGTATCTTGTCGAA
CGGTGCAAACTCGAAGTTGGGAATCTGACAACGCCGGAGCTGTACGAAGC
GGTGGACCTGCAGCATTACCTAACTTACGCCTACTTCCGTCAGACAAGTT
TAATCGTTTTTCGGGCAGAGCCAAGCTGTCCGGTCGGAGTGGCTTTCGAG
GCGTACGCTCCTTCCTCCCAGTTTCGAAAAACAGCACGCGAACATCCCAT
ATTTTACATCATGTATGGGGGCACGCGCGATCCTGTGCCCAGCGAGGAGG
AGCTGATGGCTGTATTCAAGTGGGCGAAAGGTGTGCCTGTGAAGTACGCC
ATGGTGTCCGGGGATGGAGGAGTCTTCGCCGTTAACATTGCCCATTGGCC
ATTGGAAAACAAAACGCAGACAGACACACGTGGGAAAGCTGCTGCTGCGA
CGGTCGTATCTTGTGAGCAGGAGAGAGGAAAGGAGGGCGACGAAGATACA
GAAGGTAGGAGACACAAGCTCTGTCGAAAGGACCGTCGAGAGATGGAAAG
ACAGAGGCATCAGGAAGCGTTACGTTCCAAGGAGCAGGAATGTCATGACC
TCCAGTCTGGTAACGATGAGAAAGAAGGGCTTCAAGAAAACGCGGGCGAG
TCGACCAGCGAGACACATTGCAATCTGCCCAACCTTGCAAAATGGTGAAT
TGTACAGAGTTGAATTGGTCATCTCCCACACACCTAAAACTTTTCATTGT
ATTCATAGAGCTGATGGTGAGGCTGATGACGGGTCAGAAATGGGAAATAA
TTCCTCTGACGGGCGGACATTGCAAAGCACACTAGGGAAAGCTGACAGTT
TAAGTTAAAGTACGAGACTGGGAAATACGCTATTGACATAAAAAGCAGCT
TTGGCTGTGAAATCCTTCCTGCCTCTTGTTGGTGGTACGCTAGTAAGCTG
TCCATCACTGTAAAATGTTTGGCTCCCTTGAGCACTGCATTTAAAAACAT
TTGTAAAAGGAAGAAATAATATTTTGGCACTCATATGGGCAAGCCATGAT
AATAATTTTGAAGAATCATTGCGAAATTCC back to topCoding sequence (CDS) from alignment at CM002458.1:771442..773371- >rna2049 ID=rna2049|Name=rna2049|organism=Nannochloropsis gaditana|type=CDS|length=2046bp|location=Sequence derived from alignment at CM002458.1:771442..773371- (Nannochloropsis gaditana) ACCTACTGTGAAGGGCTTTGGCGTCCCGACAAACAACTTTGCCGCATCAT AAAAACACGTGGGAACGACCTTCGCTCGATGGGTTTTCCTTACGAAGGAG ATACGCACTTATTCCCGGAAGAAACCCTGTATCTTGTCGAACGGTGCAAA CTCGAAGTTGGGAATCTGACAACGCCGGAGCTGTACGAAGCGGTGGACCT GCAGCATTACCTAACTTACGCCTACTTCCGTCAGACAAGTTTAATCGTTT TTCGGGCAGAGCCAAGCTGTCCGGTCGGAGTGGCTTTCGAGGCGTACGCT CCTTCCTCCCAGTTTCGAAAAACAGCACGCGAACATCCCATATTTTACAT CATGTATGGGGGCACGCGCGATCCTGTGCCCAGCGAGGAGGAGCTGATGG CTGTATTCAAGTGGGCGAAAGGTGTGCCTGTGAAGTACGCCATGGTGTCC GGGGATGGAGGAGTCTTCGCCGTTAACATTGCCCATTGGCCATTGGAAAA CAAAACGCAGACAGACACACGTGGGAAAGCTGCTGCTGCGACGGTCGTAT CTTGTGAGCAGGAGAGAGGAAAGGAGGGCGACGAAGATACAGAAGGTAGG AGACACAAGCTCTGTCGAAAGGACCGTCGAGAGATGGAAAGACAGAGGCA TCAGGAAGCGTTACGTTCCAAGGAGCAGGAATGTCATGACCTCCAGTCTG GTAACGATGAGAAAGAAGGGCTTCAAGAAAACGCGGGCGAGTCGACCAGC GAGACACATTGCAATCTGCCCAACCTTGCAAAATGGTGAATGGAGGTGGA TGAATCTGTCGGACACCTCTTGGCCGTGGGGCAGCTGTCCGAAAGGGAAG GCGAGGAAGGGGATGCGCATGAAGAGGAACTGTCCAAGGAGCGGCATCGA AATGAGGAGTTCGAGGAAGAGGATGAAGAGGAAGGGCTACCGCTAGTGGC TGCGGATGATGTACTTGGCAATTTACAAGTGTGGGCACGCACATTGGAAC GTCCACCGAAGGGAAATTTGAAGACCTACTGTGAAGGGCTTTGGCGTCCC GACAAACAACTTTGCCGCATCATAAAAACACGTGGGAACGACCTTCGCTC GATGGGTTTTCCTTACGAAGGAGATACGCACTTATTCCCGGAAGAAACCC TGTATCTTGTCGAACGGTGCAAACTCGAAGTTGGGAATCTGACAACGCCG GAGCTGTACGAAGCGGTGGACCTGCAGCATTACCTAACTTACGCCTACTT CCGTCAGACAAGTTTAATCGTTTTTCGGGCAGAGCCAAGCTGTCCGGTCG GAGTGGCTTTCGAGGCGTACGCTCCTTCCTCCCAGTTTCGAAAAACAGCA CGCGAACATCCCATATTTTACATCATGTATGGGGGCACGCGCGATCCTGT GCCCAGCGAGGAGGAGCTGATGGCTGTATTCAAGTGGGCGAAAGGTGTGC CTGTGAAGTACGCCATGGTGTCCGGGGATGGAGGAGTCTTCGCCGTTAAC ATTGCCCATTGGCCATTGGAAAACAAAACGCAGACAGACACACGTGGGAA AGCTGCTGCTGCGACGGTCGTATCTTGTGAGCAGGAGAGAGGAAAGGAGG GCGACGAAGATACAGAAGGTAGGAGACACAAGCTCTGTCGAAAGGACCGT CGAGAGATGGAAAGACAGAGGCATCAGGAAGCGTTACGTTCCAAGGAGCA GGAATGTCATGACCTCCAGTCTGGTAACGATGAGAAAGAAGGGCTTCAAG AAAACGCGGGCGAGTCGACCAGCGAGACACATTGCAATCTGCCCAACCTT GCAAAATGGTGAATGGAGGTGGATGAATCTGTCGGACACCTCTTGGCCGT GGGGCAGCTGTCCGAAAGGGAAGGCGAGGAAGGGGATGCGCATGAAGAGG AACTGTCCAAGGAGCGGCATCGAAATGAGGAGTTCGAGGAAGAGGATGAA GAGGAAGGGCTACCGCTAGTGGCTGCGGATGATGTACTTGGCAATTTACA AGTGTGGGCACGCACATTGGAACGTCCACCGAAGGGAAATTTGAAG back to top
|