EWM28642.1, cds2041 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28642.1 vs. NCBI_GenBank
Match: gi|585111061|gb|EWM28642.1| (tRNA-splicing endonuclease [Nannochloropsis gaditana]) HSP 1 Score: 704.516 bits (1817), Expect = 0.000e+0 Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0
Query: 1 MEVDESVGHLLAVGQLSEREGEEGDAHEEELSKERHRNEEFEEEDEEEGLPLVAADDVLGNLQVWARTLERPPKGNLKTYCEGLWRPDKQLCRIIKTRGNDLRSMGFPYEGDTHLFPEETLYLVERCKLEVGNLTTPELYEAVDLQHYLTYAYFRQTSLIVFRAEPSCPVGVAFEAYAPSSQFRKTAREHPIFYIMYGGTRDPVPSEEELMAVFKWAKGVPVKYAMVSGDGGVFAVNIAHWPLENKTQTDTRGKAAAATVVSCEQERGKEGDEDTEGRRHKLCRKDRREMERQRHQEALRSKEQECHDLQSGNDEKEGLQENAGESTSETHCNLPNLAKW 340
MEVDESVGHLLAVGQLSEREGEEGDAHEEELSKERHRNEEFEEEDEEEGLPLVAADDVLGNLQVWARTLERPPKGNLKTYCEGLWRPDKQLCRIIKTRGNDLRSMGFPYEGDTHLFPEETLYLVERCKLEVGNLTTPELYEAVDLQHYLTYAYFRQTSLIVFRAEPSCPVGVAFEAYAPSSQFRKTAREHPIFYIMYGGTRDPVPSEEELMAVFKWAKGVPVKYAMVSGDGGVFAVNIAHWPLENKTQTDTRGKAAAATVVSCEQERGKEGDEDTEGRRHKLCRKDRREMERQRHQEALRSKEQECHDLQSGNDEKEGLQENAGESTSETHCNLPNLAKW
Sbjct: 1 MEVDESVGHLLAVGQLSEREGEEGDAHEEELSKERHRNEEFEEEDEEEGLPLVAADDVLGNLQVWARTLERPPKGNLKTYCEGLWRPDKQLCRIIKTRGNDLRSMGFPYEGDTHLFPEETLYLVERCKLEVGNLTTPELYEAVDLQHYLTYAYFRQTSLIVFRAEPSCPVGVAFEAYAPSSQFRKTAREHPIFYIMYGGTRDPVPSEEELMAVFKWAKGVPVKYAMVSGDGGVFAVNIAHWPLENKTQTDTRGKAAAATVVSCEQERGKEGDEDTEGRRHKLCRKDRREMERQRHQEALRSKEQECHDLQSGNDEKEGLQENAGESTSETHCNLPNLAKW 340
BLAST of EWM28642.1 vs. NCBI_GenBank
Match: gi|546307618|ref|XP_005713389.1| (unnamed protein product [Chondrus crispus] >gi|507109777|emb|CDF33586.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 68.1662 bits (165), Expect = 2.434e-9 Identity = 47/182 (25.82%), Postives = 82/182 (45.05%), Query Frame = 0
Query: 72 PPKGNLKTYCEGLWRPDKQLCRIIKTRGNDLRSMGFPYEGDTHLFPEETLYLVERCKLE--VGNL---------TTPELYEAVDLQHYLTYAYFRQTSLIVFRA-----EPSCPVGVAFEAYAPSSQFRKTAREHPIFYIMYGGTRDPVPSEEELMAVFKWAKGVPVKYAMVSGDGGVFAVN 237
P KT W P+ + R+ RGN ++SMG +G L+PEE L+LV+R L+ VG L ++ + YL +AY R+ ++ R + + V+F A+ + F++ P+FY+ D +PS +++ A +K+A++ D GV +
Sbjct: 69 PRVARTKTLATADWDPEICMARVTAARGNAMQSMGVYKDGKQMLYPEEALFLVDRGGLDLCVGGLPCSVQRAWGIAMGAINSLSFEEYLAFAYLRRAGYVIRRVGLDEEQQLNSLKVSFAAWRVGA-FKRRDPMRPMFYVSVFKYEDSLPSFDDVAKFLDGAGKSRLKFALI--DRGVLVLK 247 The following BLAST results are available for this feature:
BLAST of EWM28642.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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