rna2049, rna2049 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2049
Unique Name	rna2049
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2049
Alignment location	CM002458.1:771442..773371 -

Link to JBrowse

Properties


Property Name	Value
Product	tRNA-splicing endonuclease
Orig transcript id	gnl\|cribi\|Naga_100182g12.952.mrna
Orig protein id	gnl\|cribi\|Naga_100182g12.952
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:771442..773371 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100182g12	gene1960	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2049	rna2049-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28642.1	cds2041	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:771442..773371-
coding sequence from alignment at CM002458.1:771442..773371-

mRNA sequence

>rna2049 ID=rna2049|Name=rna2049|organism=Nannochloropsis gaditana|type=mRNA|length=2049bp
ACACACACTGCACAACAGTTCTTCATGTCTTGTCCTTTCCTTGTTCGACG
CCAGCCGTCGTCTTGTTGTCGCCAGGCCTGCTGCCGTGATATTGAAACAG
TGACGGTCGACATCGAGGCAGGAGGTGGCTGGCTGGTGGGAATCGGTATG
AGTGTTCTTACATTCGGCGCATCTAACGCGTCAACCTCATCGGCGCGCAT
TTCTTCATATTTACAGGCATGGTCAACTGCAATGCGAGAAATCGTGATGT
GATTTCCCTCTCAAAACATGTCGCGGCCACGGCTTCACCCAAAACTTCTA
CCTCCACCTCCTCCTCCTCCCCGTCTTCTTCTACTTCTTCTTTCCCCTCC
TCCTCCTCCTCCAATCTCTCTCCACCTCCAAGCGCCGTGCAAGCATCTCC
TTCCTTTGTGAGCCTTCCAAGAATGGTACCTCCCAATGCCACGATCACTC
TAGGGCACAAAGGGGTGCCCGTGCATGAGTTGCCGGAAGAGGCTCGGGTC
CGTGTACCACTCTGCAGTGCGCGCGGGAAGGTATGCGTCGCAGGCATAAA
GCGAAAGCTTTCTGATGGCGGTGCGAAGCTATGGCAAGAAGAGAATGCTG
AAAAGACGAATGTGGGGATACTGCGCCCAAGTCACGACGCCTGGGGCATT
AAAAAAATTGTGTTCATTTACTGCGATGACTTCTTGCGGCGATGCTTCGA
GATGCCATGGTTCCATGATCCGGAATGGCAAGCCCTGCTTCTGCCAGTAT
TTCAAGCCCTTAATGTAGCTCCACGCATGGTCGTACGCTGCCTCCTCGCT
TCCATGCCTCCGGGCATTGCAATCCCCCCCCACCACGACACCGGCTACTG
GGTGCACTATTCACACCGCATTCATCTCCCCATCGAGACTGATCCTGCTC
GTATCGTGTTCCGAGTGGGGCCTAGCAAGGATCGCCTTCAGAGGTACGAC
CTCCCGGAAGGCTGCTTGGTGGAGCTGAACAACCAAGCGAAGCACAGCGT
GGACAATCTATGGGACCGGTCTCGCGTGCATTTAATTTTGGATTATTTGG
AAAAGGACAGCATCGAGAGGAGTATCCTGCCCCCTGGCGCCAAACTACAT
CAGACTCGACGATCCATAGATCTAGAAAGCGAGCATGGATCCCGGCCATG
CCCGAGCTTTCTGATCCTGGGTGCCCAGAAAAGTGGGACCACCTCTTTGT
ACGAATACCTGTGCCAGCATCCCTTGGTCCTGAGAGCAAGGCGCAGGGAG
ACGCATTACCTGGACTGGCGGTGGCGGCGAGAGGAACATTTGACGTGGGA
AGATCACCGAGAAACCTACTTGCGTTTTTTCCACGCGGCTTTGCTGAACG
AGAACCCATCTTGTATGACAGGCGAGTCCACGCCCAGTTACCTCCTGCAC
AGCGACATTGTCTTGCCCCGTGTTCGCAAGTTGGCACCCACTGCCAAGTT
GTTGGTGATCCTGCGCTGTCCCGTCGCCAGGGCATATTCCCAGTACCAGA
TGGTGACCGACCCGGAGGGCAGCGTGGAGCAGAAGAAGGCTCGGGGCAGT
CACTGGTTGGGAAAGTCCTTCGAGGAGGTTGTTGAGGCCGAGATGCAAGA
CCTGGAGAGGCACAGAGTTCATCCGACCATGAACTATCAGGAGTTTAAGG
ACGGGTATTTGTCTTCGCGGCCCCTGGGCCATGGGAGCCACTCGCTCTTA
GGTCGAGGATTGTATGCCCTGCAGCTGCAGCCGTGGCTCGAAGCATTCGG
CCGAGATCAGTTGATGGTTATGTTCATGGAAGACATGGCAAGTCATAACG
CTGTGCAGGCACAATTAGGAAAGGTGTTTGATTTTCTGGGTTTACCACCG
CATTCCATCATTGATACGCATGCTAAGAATACACGGGCATATACGCCAAT
GGACGAGAGAACAAAGGCTAGACTGAGTGCTTTTTATGCACCTTTTAACC
AGCAGCTTTTCCAAATTTTAAATGTTCACGAGCGAAGGTGGGAGGCGCGA
GAGTAGTTTAAAATATGTAAAGCAAGGAATAAAGCAATCCTAGTAATCA

protein sequence of rna2049

>rna2049-protein ID=rna2049-protein|Name=rna2049|organism=Nannochloropsis gaditana|type=polypeptide|length=340bp
MEVDESVGHLLAVGQLSEREGEEGDAHEEELSKERHRNEEFEEEDEEEGL
PLVAADDVLGNLQVWARTLERPPKGNLKTYCEGLWRPDKQLCRIIKTRGN
DLRSMGFPYEGDTHLFPEETLYLVERCKLEVGNLTTPELYEAVDLQHYLT
YAYFRQTSLIVFRAEPSCPVGVAFEAYAPSSQFRKTAREHPIFYIMYGGT
RDPVPSEEELMAVFKWAKGVPVKYAMVSGDGGVFAVNIAHWPLENKTQTD
TRGKAAAATVVSCEQERGKEGDEDTEGRRHKLCRKDRREMERQRHQEALR
SKEQECHDLQSGNDEKEGLQENAGESTSETHCNLPNLAKW

mRNA from alignment at CM002458.1:771442..773371-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2049 ID=rna2049|Name=rna2049|organism=Nannochloropsis gaditana|type=mRNA|length=1930bp|location=Sequence derived from alignment at CM002458.1:771442..773371- (Nannochloropsis gaditana)
CCTATTATTTTTAAGGGATGGGGGATGGGTTGACCTGTGTCTTCCCTGAG
GACGATGATATGAATCGGCGGCTGGGAGCTACGGGCTCATTGGTGAACCG
GAGGGGGGAGGTTAAGCTAACTTGTCTATGTCGTGGCCAAGCCCGCCCGG
ACAAATTGTGTGCTAGAATTTATCGCCCTGCAAGCCTGGCTGGAAATGAT
CAAAGTTAAATAATACATGTCAATTGCTTGTTGAGTTAAAAGCTTGTCAC
AATGGCGCGACCGGGAACGTTTAGACTTCTCGAGGGGGGACATCTTTCGT
GACGTCCATTAAGCGACTTTCTAGAGTACATCAATCGAACTCAACTGAAG
GCCAACTTCTCGCAAATAAAATAGTCTAAATAGTTGCTATGGAGGTGGAT
GAATCTGTCGGACACCTCTTGGCCGTGGGGCAGCTGTCCGAAAGGGAAGG
CGAGGAAGGGGATGCGCATGAAGAGGAACTGTCCAAGGAGCGGCATCGAA
ATGAGGAGTTCGAGGAAGAGGATGAAGAGGAAGGGCTACCGCTAGTGGCT
GCGGATGATGTACTTGGCAATTTACAAGTGTGGGCACGCACATTGGAACG
TCCACCGAAGGGAAATTTGAAGGTAGGAGTCTTTGGTGGATTTGTTTACC
TAGCCTCGGTAAAGCAAAGACAGACTGAAACATTATTGCGGAGCCTGATG
ATAATCTCTATTCGTATTTTTTTGTTTTTGGTCTTCTGCTAATATGCGGT
GACTCAAAGACCTACTGTGAAGGGCTTTGGCGTCCCGACAAACAACTTTG
CCGCATCATAAAAACACGTGGGAACGACCTTCGCTCGATGGGTTTTCCTT
ACGAAGGAGATACGCACTTATTCCCGGAAGAAACCCTGTATCTTGTCGAA
CGGTGCAAACTCGAAGTTGGGAATCTGACAACGCCGGAGCTGTACGAAGC
GGTGGACCTGCAGCATTACCTAACTTACGCCTACTTCCGTCAGACAAGTT
TAATCGTTTTTCGGGCAGAGCCAAGCTGTCCGGTCGGAGTGGCTTTCGAG
GCGTACGCTCCTTCCTCCCAGTTTCGAAAAACAGCACGCGAACATCCCAT
ATTTTACATCATGTATGGGGGCACGCGCGATCCTGTGCCCAGCGAGGAGG
AGCTGATGGCTGTATTCAAGTGGGCGAAAGGTGTGCCTGTGAAGTACGCC
ATGGTGTCCGGGGATGGAGGAGTCTTCGCCGTTAACATTGCCCATTGGCC
ATTGGAAAACAAAACGCAGACAGACACACGTGGGAAAGCTGCTGCTGCGA
CGGTCGTATCTTGTGAGCAGGAGAGAGGAAAGGAGGGCGACGAAGATACA
GAAGGTAGGAGACACAAGCTCTGTCGAAAGGACCGTCGAGAGATGGAAAG
ACAGAGGCATCAGGAAGCGTTACGTTCCAAGGAGCAGGAATGTCATGACC
TCCAGTCTGGTAACGATGAGAAAGAAGGGCTTCAAGAAAACGCGGGCGAG
TCGACCAGCGAGACACATTGCAATCTGCCCAACCTTGCAAAATGGTGAAT
TGTACAGAGTTGAATTGGTCATCTCCCACACACCTAAAACTTTTCATTGT
ATTCATAGAGCTGATGGTGAGGCTGATGACGGGTCAGAAATGGGAAATAA
TTCCTCTGACGGGCGGACATTGCAAAGCACACTAGGGAAAGCTGACAGTT
TAAGTTAAAGTACGAGACTGGGAAATACGCTATTGACATAAAAAGCAGCT
TTGGCTGTGAAATCCTTCCTGCCTCTTGTTGGTGGTACGCTAGTAAGCTG
TCCATCACTGTAAAATGTTTGGCTCCCTTGAGCACTGCATTTAAAAACAT
TTGTAAAAGGAAGAAATAATATTTTGGCACTCATATGGGCAAGCCATGAT
AATAATTTTGAAGAATCATTGCGAAATTCC

Coding sequence (CDS) from alignment at CM002458.1:771442..773371-

>rna2049 ID=rna2049|Name=rna2049|organism=Nannochloropsis gaditana|type=CDS|length=2046bp|location=Sequence derived from alignment at CM002458.1:771442..773371- (Nannochloropsis gaditana)
ACCTACTGTGAAGGGCTTTGGCGTCCCGACAAACAACTTTGCCGCATCAT
AAAAACACGTGGGAACGACCTTCGCTCGATGGGTTTTCCTTACGAAGGAG
ATACGCACTTATTCCCGGAAGAAACCCTGTATCTTGTCGAACGGTGCAAA
CTCGAAGTTGGGAATCTGACAACGCCGGAGCTGTACGAAGCGGTGGACCT
GCAGCATTACCTAACTTACGCCTACTTCCGTCAGACAAGTTTAATCGTTT
TTCGGGCAGAGCCAAGCTGTCCGGTCGGAGTGGCTTTCGAGGCGTACGCT
CCTTCCTCCCAGTTTCGAAAAACAGCACGCGAACATCCCATATTTTACAT
CATGTATGGGGGCACGCGCGATCCTGTGCCCAGCGAGGAGGAGCTGATGG
CTGTATTCAAGTGGGCGAAAGGTGTGCCTGTGAAGTACGCCATGGTGTCC
GGGGATGGAGGAGTCTTCGCCGTTAACATTGCCCATTGGCCATTGGAAAA
CAAAACGCAGACAGACACACGTGGGAAAGCTGCTGCTGCGACGGTCGTAT
CTTGTGAGCAGGAGAGAGGAAAGGAGGGCGACGAAGATACAGAAGGTAGG
AGACACAAGCTCTGTCGAAAGGACCGTCGAGAGATGGAAAGACAGAGGCA
TCAGGAAGCGTTACGTTCCAAGGAGCAGGAATGTCATGACCTCCAGTCTG
GTAACGATGAGAAAGAAGGGCTTCAAGAAAACGCGGGCGAGTCGACCAGC
GAGACACATTGCAATCTGCCCAACCTTGCAAAATGGTGAATGGAGGTGGA
TGAATCTGTCGGACACCTCTTGGCCGTGGGGCAGCTGTCCGAAAGGGAAG
GCGAGGAAGGGGATGCGCATGAAGAGGAACTGTCCAAGGAGCGGCATCGA
AATGAGGAGTTCGAGGAAGAGGATGAAGAGGAAGGGCTACCGCTAGTGGC
TGCGGATGATGTACTTGGCAATTTACAAGTGTGGGCACGCACATTGGAAC
GTCCACCGAAGGGAAATTTGAAGACCTACTGTGAAGGGCTTTGGCGTCCC
GACAAACAACTTTGCCGCATCATAAAAACACGTGGGAACGACCTTCGCTC
GATGGGTTTTCCTTACGAAGGAGATACGCACTTATTCCCGGAAGAAACCC
TGTATCTTGTCGAACGGTGCAAACTCGAAGTTGGGAATCTGACAACGCCG
GAGCTGTACGAAGCGGTGGACCTGCAGCATTACCTAACTTACGCCTACTT
CCGTCAGACAAGTTTAATCGTTTTTCGGGCAGAGCCAAGCTGTCCGGTCG
GAGTGGCTTTCGAGGCGTACGCTCCTTCCTCCCAGTTTCGAAAAACAGCA
CGCGAACATCCCATATTTTACATCATGTATGGGGGCACGCGCGATCCTGT
GCCCAGCGAGGAGGAGCTGATGGCTGTATTCAAGTGGGCGAAAGGTGTGC
CTGTGAAGTACGCCATGGTGTCCGGGGATGGAGGAGTCTTCGCCGTTAAC
ATTGCCCATTGGCCATTGGAAAACAAAACGCAGACAGACACACGTGGGAA
AGCTGCTGCTGCGACGGTCGTATCTTGTGAGCAGGAGAGAGGAAAGGAGG
GCGACGAAGATACAGAAGGTAGGAGACACAAGCTCTGTCGAAAGGACCGT
CGAGAGATGGAAAGACAGAGGCATCAGGAAGCGTTACGTTCCAAGGAGCA
GGAATGTCATGACCTCCAGTCTGGTAACGATGAGAAAGAAGGGCTTCAAG
AAAACGCGGGCGAGTCGACCAGCGAGACACATTGCAATCTGCCCAACCTT
GCAAAATGGTGAATGGAGGTGGATGAATCTGTCGGACACCTCTTGGCCGT
GGGGCAGCTGTCCGAAAGGGAAGGCGAGGAAGGGGATGCGCATGAAGAGG
AACTGTCCAAGGAGCGGCATCGAAATGAGGAGTTCGAGGAAGAGGATGAA
GAGGAAGGGCTACCGCTAGTGGCTGCGGATGATGTACTTGGCAATTTACA
AGTGTGGGCACGCACATTGGAACGTCCACCGAAGGGAAATTTGAAG

Synonyms

Publications