EWM28655.1, cds2022 (CDS) Nannochloropsis gaditana

Overview
NameEWM28655.1
Unique Namecds2022
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:730442..731359 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28655.1
Productunidentified vitellogenin-linked transcript family member (uvt-5)
Orig transcript idgnl|cribi|Naga_100177g11.1012.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:730442..731359 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0016757transferase activity, transferring glycosyl groups
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR002495Glyco_trans_8
Homology
BLAST of EWM28655.1 vs. NCBI_GenBank
Match: gi|585111076|gb|EWM28655.1| (unidentified vitellogenin-linked transcript family member (uvt-5) [Nannochloropsis gaditana])

HSP 1 Score: 630.558 bits (1625), Expect = 0.000e+0
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0
Query:    1 MSRPVARKGIANGEIIGPSSRAEHAFVTLLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHMAKNVT 305
            MSRPVARKGIANGEIIGPSSRAEHAFVTLLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHMAKNVT
Sbjct:    1 MSRPVARKGIANGEIIGPSSRAEHAFVTLLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHMAKNVT 305          
BLAST of EWM28655.1 vs. NCBI_GenBank
Match: gi|553195517|ref|XP_005856162.1| (unidentified vitellogenin-linked transcript family member (uvt-5), partial [Nannochloropsis gaditana CCMP526] >gi|422292900|gb|EKU20201.1| unidentified vitellogenin-linked transcript family member (uvt-5), partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 378.637 bits (971), Expect = 6.454e-131
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0
Query:   98 ENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEP 278
            ENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVAT VKILHFSSSPKPWEP
Sbjct:    1 ENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATHVKILHFSSSPKPWEP 181          
BLAST of EWM28655.1 vs. NCBI_GenBank
Match: gi|298710190|emb|CBJ26265.1| (Glycosyltransferase, family GT8 [Ectocarpus siliculosus])

HSP 1 Score: 265.003 bits (676), Expect = 3.782e-85
Identity = 137/274 (50.00%), Postives = 178/274 (64.96%), Query Frame = 0
Query:   29 LLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAENS-HVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHMA 301
            ++T+D F  GA+V+LHSLR       +    RP +VV+VT  +S+  R+ L+   DE++ VEPIA P    + HV  WVD G+TKL++WGL QF  VVY+DAD LV+ED+ ELF  +VDFAAAPD+FPPD+FNAGVM+V P+L V EDM+  V+   LPSYDGGDTGFLNA+F  W+S P                       + ARLPF +NA RT++W TH   PGYW A+   VKI+HF SSPKPWE     +KG+LE+ WW  +V+M M 
Sbjct:    1 MVTSDDFVIGAEVMLHSLREHCGGSTR----RPALVVMVTSGVSQLKRQALKAVSDEVIEVEPIAMPMKRAAGHVPAWVDVGYTKLRVWGLIQFRCVVYIDADALVMEDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVE--ELPSYDGGDTGFLNAYFADWFSRP-----------------------AAARLPFAYNALRTVYWTTHEKNPGYWEAIGP-VKIIHFCSSPKPWEE--TNRKGDLEMTWWQRYVQMKMG 242          
BLAST of EWM28655.1 vs. NCBI_GenBank
Match: gi|873221008|emb|CEM34465.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 222.246 bits (565), Expect = 4.613e-68
Identity = 132/286 (46.15%), Postives = 170/286 (59.44%), Query Frame = 0
Query:   25 AFVTLLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERT------RKGLEGFCDELLTVEPIANPYAEN-SHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFS-ADVDFAA-APDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWG-AVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHM 300
            A++TLLT+DSF  G + L  SLR + +            +VLV P++SERT      RKG+E    ++  V+ IANP+AE   H  GWV+SGFTKL +W LT+F+RVVY+DADC+V+  I  LF  A V   A APD+FPPDRFNAGVM++ P+L VYED+L   K   L SYD GDTGFLNA+F  WY                          +  RL F +NAQRT+HWMTH+  PGYW   V   + +LH SSSPKPWE     +KG  E  WW   ++M++
Sbjct:   15 AYITLLTSDSFAIGVETLAFSLRKTGTPHP--------FIVLVGPQVSERTFKRLSERKGVE----DVRRVDGIANPHAEEGCHEPGWVNSGFTKLHVWSLTEFQRVVYIDADCIVMRKIDCLFDPAAVSCPAFAPDVFPPDRFNAGVMVIEPSLAVYEDLL--AKRTVLRSYDRGDTGFLNAYFSGWYGWD-----------------------AKHRLAFHYNAQRTMHWMTHSKQPGYWDECVLPCLSVLHLSSSPKPWESPD--RKGPTEWLWWNMHIQMNI 261          
BLAST of EWM28655.1 vs. NCBI_GenBank
Match: gi|325185151|emb|CCA19642.1| (Glycosyltransferase putative [Albugo laibachii Nc14] >gi|325188541|emb|CCA23074.1| Glycosyltransferase putative [Albugo laibachii Nc14])

HSP 1 Score: 212.231 bits (539), Expect = 2.313e-64
Identity = 114/289 (39.45%), Postives = 168/289 (58.13%), Query Frame = 0
Query:   24 HAFVTLLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAEN------------SHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHM 300
             A+ T++T+D F  G + LL+S   + S+ +         ++L T ++S+R    L  F + L   E I     ++            SHV  W++S +TKL I+GL +++++VY+DAD L++ +I ELF  D  FAAAPDIFPPDRFNAGV++++P  DV+E++L   KA  + SYDGGDTGFLN  F  W+                       Q+ + +RLPF +NAQRT++WM ++  PGYW AV   +KILHFSSSPKPWE     + G+LE+ WW  + +  +
Sbjct:    2 QAYATMITSDDFQMGVEALLYSWSCTHSSIN--------FLILYTSQVSKRVLDKLHRFLETLRMSERIKWMRVDSIPIPASSSDPPSSHVESWLNSAYTKLNIFGLEEYQKIVYIDADALILTNIDELFEMDTSFAAAPDIFPPDRFNAGVLVIKPGKDVFENLL--AKAKTIKSYDGGDTGFLNLVFSDWF-----------------------QRDAASRLPFRYNAQRTMYWMVNSKNPGYWKAVEP-LKILHFSSSPKPWEEPN--RIGDLEMIWWMYYTKAQI 254          
BLAST of EWM28655.1 vs. NCBI_GenBank
Match: gi|403336458|gb|EJY67427.1| (Glycosyltransferase, family GT8 (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 207.608 bits (527), Expect = 1.325e-62
Identity = 109/276 (39.49%), Postives = 164/276 (59.42%), Query Frame = 0
Query:   29 LLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLT-VEPIANPY--AENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATR---VKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEM 298
            ++T D + PG QVL ++LR   S          ++V+++   + + T   ++   + ++  V+PI NP+  ++  + S WV SG+TKL IW L QF++V Y+DADCL+  + +  F  + DFAAAPD+FPPDRFNAGV+L++P++ V+ DM+   K    P+YDGGDTGFLNA++P WY                        K S +RLP+ +NAQRTL+W T     GYW  +      + I+H+SSSPKPW  +    KG+LE+ W+ T++EM
Sbjct:    1 MITDDGYLPGLQVLHYTLRKFTSR---------LLVIILAENVKKITEMQIKKLSNVMIKRVKPILNPHEKSQTDNASSWVGSGYTKLYIWTLIQFQKVFYIDADCLISSNPENAFDRNSDFAAAPDVFPPDRFNAGVLLIKPSMTVFRDMIS--KILTFPAYDGGDTGFLNAYYPDWY-----------------------LKDSDSRLPYGYNAQRTLYWFTIKRTDGYWKEIINSKEGLVIIHYSSSPKPWVGQ---PKGDLELLWFQTYMEM 239          
BLAST of EWM28655.1 vs. NCBI_GenBank
Match: gi|635372360|emb|CCI39581.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 198.749 bits (504), Expect = 8.052e-60
Identity = 95/207 (45.89%), Postives = 140/207 (67.63%), Query Frame = 0
Query:   91 PIANPYAENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVE 297
            P  N     +HV+ W++S +TKL I+GL +++++VY+DAD L++ +I ELF  D +FAAAPDIFPPDRFNAGV++V+P+ +V++++L   KA A+ SYDGGDTGFLN  FP W+                       ++ +++RL F +NAQRT+HW+ ++  PGYW A+   +KILHFSS+PKPW  E  ++ GELE+ WWT + +
Sbjct:   16 PAYNADPPEAHVTSWLNSAYTKLHIFGLKEYQKIVYIDADALILTNIDELFDLDTNFAAAPDIFPPDRFNAGVLVVKPDYNVFQELL--AKARAVKSYDGGDTGFLNLVFPDWF-----------------------ERDAISRLHFRYNAQRTMHWLVNSKNPGYWEALKP-LKILHFSSNPKPW--EETKRIGELEMTWWTYYTK 194          
BLAST of EWM28655.1 vs. NCBI_GenBank
Match: gi|1129190228|gb|OLP95499.1| (putative glucuronosyltransferase PGSIP6 [Symbiodinium microadriaticum])

HSP 1 Score: 211.46 bits (537), Expect = 4.319e-58
Identity = 125/273 (45.79%), Postives = 165/273 (60.44%), Query Frame = 0
Query:   26 FVTLLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCD-ELLTVEPIANPYAENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVE 297
            F TLLT+D F    Q L  SLR         +   P++V L T ++S   +  L      +L  V+ I NP+   + VSGWV+SGFTKL++W    FE++VY+DADC+V+E+I ELF A    A  PD+FPPD+FNAGV+++ PNL V++DM+   K   LPS+DGGDTGFLNAFFP WY  P                   P +    RLPF +NA RT++W THA  PGYW +V   VK+LHF SSPKPW+ E   KKG+LE  WW  +++
Sbjct: 1187 FATLLTSDDFLMAVQALAASLRACT------LQTLPLLV-LHTSQVSRGAQSRLATDPSVQLRLVDAIPNPH--KTDVSGWVNSGFTKLRLWEQVDFEKIVYVDADCIVLENIDELF-AHACPAFCPDVFPPDKFNAGVIVLEPNLSVFQDMMD--KMLVLPSHDGGDTGFLNAFFPDWYLWP-------------------PDQ----RLPFRYNALRTMYWFTHA-NPGYWESVQP-VKVLHFCSSPKPWDKEA--KKGDLEALWWEHYLK 1420          
BLAST of EWM28655.1 vs. NCBI_GenBank
Match: gi|551671212|ref|XP_005838363.1| (hypothetical protein GUITHDRAFT_65972, partial [Guillardia theta CCMP2712] >gi|428182523|gb|EKX51383.1| hypothetical protein GUITHDRAFT_65972, partial [Guillardia theta CCMP2712])

HSP 1 Score: 187.963 bits (476), Expect = 1.198e-55
Identity = 98/205 (47.80%), Postives = 126/205 (61.46%), Query Frame = 0
Query:  102 VSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPG------YWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHM 300
            +  W  SG+TKL IW LT+F ++VY+DADCLV+E I +LFS +  FAAAPD FPPDRFNAGV++V P+L+V+EDM+  +  G + SYDGGDTGFLN++F  W++      G  S                  RLPF +NA RT++W+T    PG      YW AV   V+ LHF S PKPW+      KGELE KWW  F E  +
Sbjct:    1 IDAWDQSGYTKLNIWKLTEFSKLVYVDADCLVMESIDDLFSRETRFAAAPDTFPPDRFNAGVLVVEPSLEVFEDMISRI--GVMHSYDGGDTGFLNSYFHDWFT-----MGEAS------------------RLPFRYNALRTMYWLTQK-KPGQPAGYSYWNAVGA-VRCLHFCSFPKPWDQRLQAPKGELEQKWWVAFAECQL 178          
BLAST of EWM28655.1 vs. NCBI_GenBank
Match: gi|676382965|ref|XP_009034761.1| (hypothetical protein AURANDRAFT_6116, partial [Aureococcus anophagefferens] >gi|323454433|gb|EGB10303.1| hypothetical protein AURANDRAFT_6116, partial [Aureococcus anophagefferens])

HSP 1 Score: 187.578 bits (475), Expect = 3.707e-55
Identity = 106/251 (42.23%), Postives = 148/251 (58.96%), Query Frame = 0
Query:   25 AFVTLLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAENSHVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKP 275
            A+ T++T D + PGA  LL SLR S SAK +        +VLVT ++SER+R+ L      ++ VEPI NP+        W   G+TKL +WGLT++ ++VY+DAD +V+E++ ELF+ DV FAAAPDIFPPD+FN+GVM++ P+ + ++ ML+        S+DGGD GFLN FF  W+  P+                         RL F +N QRTLH   HA   G+W  V   +K+LHF+S PKP
Sbjct:    2 AYATVITNDGYAPGALALLQSLRASRSAKPR--------LVLVTSDVSERSRRLLRRLA-TVVDVEPIPNPHTPLDGKECWARCGYTKLALWGLTEYTKLVYVDADAVVLENVDELFALDVAFAAAPDIFPPDKFNSGVMVLAPSKETFDAMLKVAPDAR--SHDGGDGGFLNEFFDDWFEGPVA-----------------------GRLAFRYNCQRTLHRFMHAHNAGFWD-VCKPIKVLHFASVPKP 217          
The following BLAST results are available for this feature:
BLAST of EWM28655.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111076|gb|EWM28655.1|0.000e+0100.00unidentified vitellogenin-linked transcript family... [more]
gi|553195517|ref|XP_005856162.1|6.454e-13199.45unidentified vitellogenin-linked transcript family... [more]
gi|298710190|emb|CBJ26265.1|3.782e-8550.00Glycosyltransferase, family GT8 [Ectocarpus silicu... [more]
gi|873221008|emb|CEM34465.1|4.613e-6846.15unnamed protein product [Vitrella brassicaformis C... [more]
gi|325185151|emb|CCA19642.1|2.313e-6439.45Glycosyltransferase putative [Albugo laibachii Nc1... [more]
gi|403336458|gb|EJY67427.1|1.325e-6239.49Glycosyltransferase, family GT8 (macronuclear) [Ox... [more]
gi|635372360|emb|CCI39581.1|8.052e-6045.89unnamed protein product [Albugo candida][more]
gi|1129190228|gb|OLP95499.1|4.319e-5845.79putative glucuronosyltransferase PGSIP6 [Symbiodin... [more]
gi|551671212|ref|XP_005838363.1|1.198e-5547.80hypothetical protein GUITHDRAFT_65972, partial [Gu... [more]
gi|676382965|ref|XP_009034761.1|3.707e-5542.23hypothetical protein AURANDRAFT_6116, partial [Aur... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2030rna2030Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications