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Properties
| Property Name | Value |
|---|
| Product | unidentified vitellogenin-linked transcript family member (uvt-5) |
| Orig transcript id | gnl|cribi|Naga_100177g11.1012.mrna |
| Orig protein id | gnl|cribi|Naga_100177g11.1012 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:729680..731438 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2030 ID=rna2030|Name=rna2030|organism=Nannochloropsis gaditana|type=mRNA|length=1275bp
ATGCTCAAATGGAGTCTTTGGATCGTATGGCTACCTTTTCTAGTCTTGAG
CCGCCCAACCTTTTTGCATTCCTTTTCTAAAGCGAATTACATGTGGTCAA
GCCTGTTACCATTCTCAAAATCAAGAGCCATGCCCCTGCTTTGTGCCTCA
ACTCAACAAAACTCGAGGGACCTGACAGACCTGACAGACCTTAGATCGCT
CTTAACCGAGGCGGTAGAGCTTATGAGCGACGATCCAAAGAGCGCGCTGT
CGGAAGGACGATGGGTGAAGCTTATCTGTGGGGCTTCGTATCAGGACCTA
CCGCGGGTGAAAGCCCTCTGCTTTGCTTACACCCTAGCGGGCGTGGACTG
CATCGACATGTCGGCAAGCCAAGCGGTTGTGACGGCAGCAGAAGAAGGCG
TCGGGGCTGCCATGCTCTTGGCTGAACAAGTGCTGGAGGCGGTGCCCTAC
CAGGTGGAGGCGGCGGATGTTCTCACCTCTCTAGCGGGCCGCATCGATGC
CCTGGAGATTCACACGAACGCCTCGGCATCCTCCGCGGGGCGCGACCCCT
TCGAAGACCTTTGTCGGCGCATTCGACCACAGGCCTCAGGCCTAAGGGCT
GTCTCTGTGAGCTTTCCCTTCATGGGAACCGCGGGAACCGCCGCTTTCCT
CAAGTCCCGCAACGCCGTCTTTGGCCGATGCTTTGGGCCGGACGATGAGC
GTCCTTTCACCGGGGTCTTGGCCGGTGTCGGAGACTCCCCACCCCCGCGG
CCCCTTCACATCTGGCAGACGGACGGCAGGCCCATGAGCGGGGACATCGG
GCGCGGAACCACCTTGAGTGCCGTTAAATTCGCTCAAGTCGTGCTCCGAT
CCCAAGCCCTGCCATGGGCCAGCTCCATGGTGTCAGAAGATGAGCACTTT
CTTCAGTTAGCGGGAGGAACGAACGCCTACACGGCAGAAAAGCTCGCTGA
CGAGGGCCTGCTCTCTCCGGCATCGGTGGTGAGAGGTCAGAGTGACGCGA
CTCAAGAGAAGGATCGCTCCGCGTGGGTGCATGGTTTGGCTTTCGGGGGC
TTTGCGCGTATGGAAGTAGACCGCATCATGAGCCAGTGGGGCCTGGGACC
CGAGGCCTCTCTGATTGAAGCACCTCCCGACGCCTTGCTCGCTGTGCTTA
GGGCCGCTTTTGGAGTGGTGCGGCCGATCAAGAAGAGGTAGCGTTGGGCC
TTTTCTGTGCAAAGCAAGATATTAAATTCAAGTGTAGATATTGTACAAAG
AATCAGTTCAAGTCATGAGAGATTA back to topprotein sequence of rna2030 >rna2030-protein ID=rna2030-protein|Name=rna2030|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MSRPVARKGIANGEIIGPSSRAEHAFVTLLTTDSFGPGAQVLLHSLRTSI
SAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAENS
HVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAA
PDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFF
PKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTH
AVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMHM
AKNVT back to topmRNA from alignment at CM002458.1:729680..731438+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2030 ID=rna2030|Name=rna2030|organism=Nannochloropsis gaditana|type=mRNA|length=1759bp|location=Sequence derived from alignment at CM002458.1:729680..731438+ (Nannochloropsis gaditana)
GCTTGGCTTGCCGACATGTCGATGCAGTCCACGCCCGCTAGGGTGTAAGC
AAAGCAGAGGGCTTTCACCCGCGGTAGGTCCTGATACGAAGCCCCACAGA
TAAGCTTCACCCATCGTCCTTCCGACAGCGCGCTCTTTGGATCGTCGCTC
ATAAGCTCTACCGCCTCGGTTAAGAGCGATCTAAGGTCTGTCAGGTCTGT
CAGGTCCCTCGAGTTTTGTTGAGTTGAGGCACAAAGCAGGGGCATGGCTC
TTGATTTTGAGAATGGTAACAGGCTTGACCACATGTAATTCGCTTTAGAA
AAGGAATGCAAAAAGGTTGGGCGGCTCAAGACTAGAAAAGGTAGCCATAC
GATCCAAAGACTCCATTTGAGCATCCTCTGTGTGGTAAGAGCGTGATTGA
GTGTGAGAGGAGCAAggccggggggcggggagctcGGCGTTGAAGAACAA
AGAGCCGCTTCGTCTCGCTGTAAGCGACGCCGAGTAGTTTAGTTTAGGAT
GTTAGCTGCCCGGCACCTCCCAAACACTTGAAAATGGCATGATGCTTGTA
CTTGGGTAAGAGTGTGGACAACCCTATAGCAAGGACCGAGCATAGTTTGA
CGTTACTCCTGGACGTGATAAAGCCGGGTAAAACCTCCTAaccgcagcct
cctccctcaactTGGTGGTAGTAGCAATTTTTTGGAAATGACTTGTAATT
CCGGACTCTGACCATGACAGTCCCTCCACTCATGTTTTGGAAAATTTCTC
ACTCTTTATCAGATGTCCCGTCCCGTTGCAAGGAAGGGCATTGCGAACGG
CGAAATCATTGGCCCATCTTCCCGGGCGGAGCATGCCTTCGTCACCCTCC
TTACGACGGATTCTTTCGGCCCGGGAGCCCAGGTCTTACTTCACTCACTG
AGAACTAGCATATCAGCCAAAGATAAAGATGTTGCAATCAGACCTGTCGT
CGTAGTTCTCGTTACACCCGAAATATCAGAGCGAACGCGGAAGGGCTTGG
AGGGTTTCTGCGATGAACTGCTAACAGTGGAGCCCATTGCCAACCCGTAC
GCCGAAAATTCCCACGTATCCGGGTGGGTTGATTCTGGTTTTACGAAACT
TCAAATATGGGGCCTGACTCAATTTGAGCGGGTTGTATACCTCGATGCGG
ACTGCCTAGTGGTAGAAGATATACAGGAGCTCTTTTCTGCCGATGTGGAT
TTCGCTGCAGCACCAGACATTTTCCCTCCGGATCGCTTCAATGCTGGTGT
GATGCTAGTACGGCCAAATCTTGATGTGTATGAAGACATGCTAAGGGCAG
TAAAGGCTGGAGCGTTGCCCTCGTATGACGGCGGAGACACGGGGTTTTTG
aatgcctttttccccaagTGGTACTCCTCTCCGCTTGTTCGAACGGGCTC
GACATCGTCCTCTTTTTCGACCTGTGGGGGCAACACAATGCCGCAAAAAG
TTTCCATGGCCCGTCTTCCTTTTATTTGGAACGCGCAACGCACGCTGCAC
TGGATGACGCATGCCGTAGCTCCCGGATACTGGGGGGCCGTGGCCACGCG
CGTGAAAATCCTCCATTTCTCGTCCAGCCCCAAGCCCTGGGAGCCGGAGG
GCGTacgaaagaaaggagagttAGAAGTGAAATGGTGGACTACGTTCGTT
GAAATGCACATGGCAAAAAATGTCACCTAAAATGACGGTTACGTGGGATG
CTTTATATTTGTTTCTTTTCAGACGATGGTCGATTCGACACAGACAGATG
AATACACGA back to topCoding sequence (CDS) from alignment at CM002458.1:729680..731438+ >rna2030 ID=rna2030|Name=rna2030|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at CM002458.1:729680..731438+ (Nannochloropsis gaditana)
ATGTCCCGTCCCGTTGCAAGGAAGGGCATTGCGAACGGCGAAATCATTGG
CCCATCTTCCCGGGCGGAGCATGCCTTCGTCACCCTCCTTACGACGGATT
CTTTCGGCCCGGGAGCCCAGGTCTTACTTCACTCACTGAGAACTAGCATA
TCAGCCAAAGATAAAGATGTTGCAATCAGACCTGTCGTCGTAGTTCTCGT
TACACCCGAAATATCAGAGCGAACGCGGAAGGGCTTGGAGGGTTTCTGCG
ATGAACTGCTAACAGTGGAGCCCATTGCCAACCCGTACGCCGAAAATTCC
CACGTATCCGGGTGGGTTGATTCTGGTTTTACGAAACTTCAAATATGGGG
CCTGACTCAATTTGAGCGGGTTGTATACCTCGATGCGGACTGCCTAGTGG
TAGAAGATATACAGGAGCTCTTTTCTGCCGATGTGGATTTCGCTGCAGCA
CCAGACATTTTCCCTCCGGATCGCTTCAATGCTGGTGTGATGCTAGTACG
GCCAAATCTTGATGTGTATGAAGACATGCTAAGGGCAGTAAAGGCTGGAG
CGTTGCCCTCGTATGACGGCGGAGACACGGGGTTTTTGaatgcctttttc
cccaagTGGTACTCCTCTCCGCTTGTTCGAACGGGCTCGACATCGTCCTC
TTTTTCGACCTGTGGGGGCAACACAATGCCGCAAAAAGTTTCCATGGCCC
GTCTTCCTTTTATTTGGAACGCGCAACGCACGCTGCACTGGATGACGCAT
GCCGTAGCTCCCGGATACTGGGGGGCCGTGGCCACGCGCGTGAAAATCCT
CCATTTCTCGTCCAGCCCCAAGCCCTGGGAGCCGGAGGGCGTacgaaaga
aaggagagttAGAAGTGAAATGGTGGACTACGTTCGTTGAAATGCACATG
GCAAAAAATGTCACCTAA back to top
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