EWM28793.1, cds2001 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28793.1 vs. NCBI_GenBank
Match: gi|585111216|gb|EWM28793.1| (tom1 protein [Nannochloropsis gaditana]) HSP 1 Score: 859.366 bits (2219), Expect = 0.000e+0 Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 0 Query: 1 MEYFTNSKLSQSRSDLLTPVGRLIDDATSETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAVLELALEVHEEVVEVLGAEKSHAELRGGEGKGENEGAKREGRAETGRTDDLLDFDHHPPPAPMPRPIPTHPDLTATGGENEGQGGDGARVTQSSDPLDIFEAPPAARVCALGDAQSLSPAALNALELDDDRDPPVK 426 MEYFTNSKLSQSRSDLLTPVGRLIDDATSETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAVLELALEVHEEVVEVLGAEKSHAELRGGEGKGENEGAKREGRAETGRTDDLLDFDHHPPPAPMPRPIPTHPDLTATGGENEGQGGDGARVTQSSDPLDIFEAPPAARVCALGDAQSLSPAALNALELDDDRDPPVK Sbjct: 1 MEYFTNSKLSQSRSDLLTPVGRLIDDATSETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAVLELALEVHEEVVEVLGAEKSHAELRGGEGKGENEGAKREGRAETGRTDDLLDFDHHPPPAPMPRPIPTHPDLTATGGENEGQGGDGARVTQSSDPLDIFEAPPAARVCALGDAQSLSPAALNALELDDDRDPPVK 426
BLAST of EWM28793.1 vs. NCBI_GenBank
Match: gi|695414132|ref|XP_009526222.1| (hypothetical protein PHYSODRAFT_300330 [Phytophthora sojae] >gi|348677347|gb|EGZ17164.1| hypothetical protein PHYSODRAFT_300330 [Phytophthora sojae]) HSP 1 Score: 144.05 bits (362), Expect = 1.172e-36 Identity = 95/269 (35.32%), Postives = 146/269 (54.28%), Query Frame = 0 Query: 23 LIDDATSETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAV 291 L+ AT ETL P+W+LN+A+CD N+ + +R +R+L+ PKV L L L ET++KN + H+LVGS FL ++++L+DG G +V+ QAL L++QW +F + AF Y L+LQGV FP +E PIFTPP+ + A+ S+ A +AAPR RT ++ L KL DL V+E+ + + H++G ++G E L + + FL C+ R+ +IE G+ G + TL E + Sbjct: 11 LVLRATDETLAGPEWALNMALCDCANAQHA-ACDDIVRLLQRRLQSGQPKVALLALVLTETLVKNGP-----AAVHSLVGSRLFLNEVAALSDGSLGVDVQNQALLLIRQWADAFMG-GELHAFQDVYRQLKLQGVAFPEVENDVPIFTPPSSTTAASREESS--------------------AGFAAAAPR-RTREQQLEKLHADLKVVQEKIKLLREL--HTKG-QTG-EQLEDVLDFLRQCQPRMNTLIEGGVMGKIDERTLEECL 247
BLAST of EWM28793.1 vs. NCBI_GenBank
Match: gi|676394977|ref|XP_009040766.1| (hypothetical protein AURANDRAFT_38976 [Aureococcus anophagefferens] >gi|323448617|gb|EGB04513.1| hypothetical protein AURANDRAFT_38976 [Aureococcus anophagefferens]) HSP 1 Score: 145.976 bits (367), Expect = 1.512e-36 Identity = 103/291 (35.40%), Postives = 155/291 (53.26%), Query Frame = 0 Query: 23 LIDDATSET-LVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPR-LEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTE--IDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAVLELALEVHEEVVEVLGAE 309 L++ ATS+ + D+ +NL +CDA+ + A A +++L + + V L+LTLLE +KN + HA VG L++I+ L +G G EVK QALAL+QQWG++FESR AF TY L+++G +FP E ++P+FTPP Q T + V A + +DR L K++ D+ V E+ R C M+ +S GI+ D+ALAE VGFLEAC+ RL ++E+G+ G TLT L+V++++ E L E Sbjct: 4 LVESATSDVRMGLVDFGVNLEICDALERNPSDAVTMAF-AVKKRLGKNDAHVTALSLTLLEMCVKNCGE-----AVHAAVGQQQILSEIAKLCEGGSGEEVKRQALALVQQWGVAFESRDALPAFADTYTALKVKGFEFPTGNEENAPVFTPPRQ-------DGTVVQDDAVYAAALADGSLDRA----------------NALAKVRADVEIVAEKIRLCKEMVPNSPGIDH-DDALAEVVGFLEACRPRLAILVESGLSGAFGDETLTS-----CLKVNDDLHEALQGE 259
BLAST of EWM28793.1 vs. NCBI_GenBank
Match: gi|301120452|ref|XP_002907953.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102984|gb|EEY61036.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 137.887 bits (346), Expect = 1.107e-33 Identity = 93/277 (33.57%), Postives = 148/277 (53.43%), Query Frame = 0 Query: 30 ETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAVLELALEVHEEVVEVL 306 ++L P+W+LN+A+CD N+ D V + +R +R+L+ +PKV L L L ETV+KN P H+ VGS FL+++++L DG G +V+ QAL L++QW +F+ + AF Y L++QG+ FP +E +PIFTP P+ST+ E SAAP T ++ L KL DL V+E+ + + H+ G ++G E L + + FL C+ R+ +IE G+ G + E LE L V++ +++ L Sbjct: 7 DSLAGPEWALNIALCDCANASDA-VCDDIVRFLQRRLQSNSPKVALLALVLTETVVKNGP-PA----IHSQVGSRVFLSEVAALADGSLGVDVQNQALLLIRQWADAFKG-TELQAFQDVYRQLKMQGIAFPEIENDAPIFTP---------PSSTSIREEDYTT---------------SAAPGRHTREQQLQKLHADLKVVQEKIKQLRDL--HTRG-QTG-EQLEDVLDFLRQCQPRMNTLIEGGIMG-----KIDERTLEECLNVNDTLMKTL 243
BLAST of EWM28793.1 vs. NCBI_GenBank
Match: gi|953497286|emb|CEG41595.1| (tom1 protein [Plasmopara halstedii]) HSP 1 Score: 134.806 bits (338), Expect = 1.514e-32 Identity = 86/269 (31.97%), Postives = 135/269 (50.19%), Query Frame = 0 Query: 23 LIDDATSETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAV 291 L+ AT TL P+W+LN+A+CD N+ + + +R +L+ NPKV L L L ET++KN S+ H+ V S +FL ++ +TDG G +V+ QAL L+QQW +F+ AF Y L+LQGV FP +E +P+FTPP+ + V +S A P +T + L KL DL V+++ + + ++G+E L + + FL C+ R+ +IE G+ G + TL E + Sbjct: 33 LVARATDSTLEGPEWALNMALCDCANARRRYCDD-IVRFLLHRLQSGNPKVTLLALVLTETLVKNG-----PSKIHSRVASRNFLNQVVRVTDGSLGVDVQNQALLLIQQWADAFKGG----AFQHVYRQLKLQGVAFPEVEHDAPVFTPPSSIDSVR--------------------EENVLSSSAGAGPVRKTRELQLQKLHDDLKVVQQKIKVLKDLYFRG---QTGEE-LDDILDFLRQCQPRMNTLIEGGIMGKIDERTLEECL 267
BLAST of EWM28793.1 vs. NCBI_GenBank
Match: gi|298714040|emb|CBJ27272.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 134.806 bits (338), Expect = 1.004e-31 Identity = 65/161 (40.37%), Postives = 105/161 (65.22%), Query Frame = 0 Query: 1 MEYFTNSKLSQSRSDLLTPVGRLIDDATSETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFP 161 M++ N + ++ T +G LI+ ATSE+LV DW+LN+ +CD +N + A +A +R+L+ NPK+L LTLTL ET +KN +P H +G+ +FLA+++ L +G++G+EV+ +AL L+Q WG++F+S R +LA+ TY L+ QG +FP Sbjct: 1 MDFLAN--IGIPGTEFTTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGP-SHAAKALKRRLKSDNPKILGLTLTLCETTMKNCSRP-----LHRALGAREFLAEVAGLCNGQKGYEVRSRALGLIQDWGIAFQSDR-SLAYSETYGRLKAQGARFP 152
BLAST of EWM28793.1 vs. NCBI_GenBank
Match: gi|675168645|ref|XP_008893207.1| (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|675168647|ref|XP_008893208.1| hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >gi|568106778|gb|ETN21408.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|568106779|gb|ETN21409.1| hypothetical protein, variant 4 [Phytophthora parasitica INRA-310]) HSP 1 Score: 124.405 bits (311), Expect = 2.961e-29 Identity = 92/269 (34.20%), Postives = 143/269 (53.16%), Query Frame = 0 Query: 23 LIDDATSETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAV 291 L+ AT+E L P+W+LN+A+CD N+ V + +R +R+L+ NPKV LTL L ET++KN P H+ +GS FL ++++L+DG G +V+ QAL L++QW +F+ + AF Y L+++GV FP +E PIFTPP+ AS G +AP RT ++ L KL DL V+E+ + + H+ G ++G E L + + FL C+ R+ +IE G+ G + TL E + Sbjct: 14 LVSRATAEYLAGPEWALNIALCDCANAHHA-VCDDIVRFLQRRLQSDNPKVALLTLVLTETLVKNGP-PA----IHSQIGSRLFLNQVAALSDGSLGVDVQNQALLLIRQWADAFKG-SELHAFQDVYRQLKMRGVAFPEIENDVPIFTPPS-------SASKEENYSG-------------------SAPMRRTREQQLEKLHADLKVVQEKIKLLRDL--HNRG-QTG-EQLEDVLDFLRQCQPRMNTLIEGGIMGKIDERTLEECL 245
BLAST of EWM28793.1 vs. NCBI_GenBank
Match: gi|566022337|gb|ETI45248.1| (hypothetical protein, variant 3 [Phytophthora parasitica P1569] >gi|566022338|gb|ETI45249.1| hypothetical protein, variant 4 [Phytophthora parasitica P1569] >gi|567959640|gb|ETK85209.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|567959641|gb|ETK85210.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|567988346|gb|ETL38624.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|567988347|gb|ETL38625.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568017579|gb|ETL91756.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568017580|gb|ETL91757.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568047986|gb|ETM45054.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568047987|gb|ETM45055.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|570325925|gb|ETO73873.1| hypothetical protein, variant 3 [Phytophthora parasitica P1976] >gi|570325926|gb|ETO73874.1| hypothetical protein, variant 4 [Phytophthora parasitica P1976] >gi|570949809|gb|ETP15066.1| hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1] >gi|570949810|gb|ETP15067.1| hypothetical protein, variant 4 [Phytophthora parasitica CJ01A1] >gi|570983262|gb|ETP43128.1| hypothetical protein, variant 3 [Phytophthora parasitica P10297] >gi|570983263|gb|ETP43129.1| hypothetical protein, variant 4 [Phytophthora parasitica P10297]) HSP 1 Score: 124.02 bits (310), Expect = 3.315e-29 Identity = 92/269 (34.20%), Postives = 143/269 (53.16%), Query Frame = 0 Query: 23 LIDDATSETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAV 291 L+ AT+E L P+W+LN+A+CD N+ V + +R +R+L+ NPKV LTL L ET++KN P H+ +GS FL ++++L+DG G +V+ QAL L++QW +F+ + AF Y L+++GV FP +E PIFTPP+ AS G +AP RT ++ L KL DL V+E+ + + H+ G ++G E L + + FL C+ R+ +IE G+ G + TL E + Sbjct: 14 LVSRATAEYLAGPEWALNIALCDCANAHHA-VCDDIVRFLQRRLQSDNPKVALLTLVLTETLVKNGP-PA----IHSQIGSRLFLNQVAALSDGSLGVDVQNQALLLIRQWADAFKG-SELHAFQDVYRQLKMRGVAFPEIENDVPIFTPPS-------SASKEENYSG-------------------SAPMRRTREQQLEKLHADLKVVQEKIKLLRDL--HNRG-QTG-EQLEDVLDFLRQCQPRMNTLIEGGIMGKIDERTLEECL 245
BLAST of EWM28793.1 vs. NCBI_GenBank
Match: gi|566022336|gb|ETI45247.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567959639|gb|ETK85208.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567988345|gb|ETL38623.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568017578|gb|ETL91755.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568047985|gb|ETM45053.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570325924|gb|ETO73872.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570949808|gb|ETP15065.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570983261|gb|ETP43127.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 124.79 bits (312), Expect = 4.584e-29 Identity = 90/269 (33.46%), Postives = 142/269 (52.79%), Query Frame = 0 Query: 23 LIDDATSETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAV 291 L+ AT+E L P+W+LN+A+CD N+ V + +R +R+L+ NPKV LTL L ET++KN P H+ +GS FL ++++L+DG G +V+ QAL L++QW +F+ + AF Y L+++GV FP +E PIFTPP+ S + +AP RT ++ L KL DL V+E+ + + H+ G ++G E L + + FL C+ R+ +IE G+ G + TL E + Sbjct: 14 LVSRATAEYLAGPEWALNIALCDCANAH-HAVCDDIVRFLQRRLQSDNPKVALLTLVLTETLVKNGP-PA----IHSQIGSRLFLNQVAALSDGSLGVDVQNQALLLIRQWADAFKG-SELHAFQDVYRQLKMRGVAFPEIENDVPIFTPPSSASK--------------------------EENYSGSAPMRRTREQQLEKLHADLKVVQEKIKLLRDL--HNRG-QTG-EQLEDVLDFLRQCQPRMNTLIEGGIMGKIDERTLEECL 245
BLAST of EWM28793.1 vs. NCBI_GenBank
Match: gi|675168643|ref|XP_008893206.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|568106777|gb|ETN21407.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310]) HSP 1 Score: 124.79 bits (312), Expect = 4.631e-29 Identity = 90/269 (33.46%), Postives = 142/269 (52.79%), Query Frame = 0 Query: 23 LIDDATSETLVTPDWSLNLAVCDAVNSDDEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEIDRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAV 291 L+ AT+E L P+W+LN+A+CD N+ V + +R +R+L+ NPKV LTL L ET++KN P H+ +GS FL ++++L+DG G +V+ QAL L++QW +F+ + AF Y L+++GV FP +E PIFTPP+ S + +AP RT ++ L KL DL V+E+ + + H+ G ++G E L + + FL C+ R+ +IE G+ G + TL E + Sbjct: 14 LVSRATAEYLAGPEWALNIALCDCANAH-HAVCDDIVRFLQRRLQSDNPKVALLTLVLTETLVKNGP-PA----IHSQIGSRLFLNQVAALSDGSLGVDVQNQALLLIRQWADAFKG-SELHAFQDVYRQLKMRGVAFPEIENDVPIFTPPSSASK--------------------------EENYSGSAPMRRTREQQLEKLHADLKVVQEKIKLLRDL--HNRG-QTG-EQLEDVLDFLRQCQPRMNTLIEGGIMGKIDERTLEECL 245 The following BLAST results are available for this feature:
BLAST of EWM28793.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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