rna2009, rna2009 (mRNA) Nannochloropsis gaditana

Overview
Namerna2009
Unique Namerna2009
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1641
Alignment locationCM002458.1:686509..688046 -

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Properties
Property NameValue
Producttom1 protein
Orig transcript idgnl|cribi|Naga_100002g12.4912.mrna
Orig protein idgnl|cribi|Naga_100002g12.4912
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:686509..688046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g12gene1920Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28793.1cds2001Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2009rna2009-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2009 ID=rna2009|Name=rna2009|organism=Nannochloropsis gaditana|type=mRNA|length=1641bp
CAAGGTCTGATAAATTCGCGCTATCGCGTCTATGCCTGTCCGTACACGTT
CTGGGCGCCTGCTCCTTACGGTGCACCTTATCGGCTTGCTGCTAGCGCTT
GTTATGAACCTCTCGCATGGGGAATCCCAGGTGATCTCGGAGGAGAAGCA
GAAGGAGGCAATCGTTACATCTCATGAGGAGTCAGCGCATCGCGACCGGG
CAGGTCCGCCGGTGCAGGCGCATGTTAACAGGCGCGGACCGAAAGAAAAC
AAGGCTTTGGAGGAAGAGACAAGTGGGGGCGGCTCGATTCCCGCAGAAGA
AGATAGGAAAATGGAGGAGGAGAAGGAGCCTAAATCAATGCCCGAGACGG
CAAGCGTGCCCTCGAAGAGCCCCCCCCCCTCCGTCTCAAAAGACAATCAT
CGACATTTTTCGTATCGCGGGGAAGAGAGCATTAGGTGGCGGGATCCCAG
GGGCGCTGGCCGGCATGATGCAAGTCGTGACCCTCATGTGGTTGCGGACG
GTCGGCAACTACCAGTACCGGTACGGGACCTCCTTCACGGAGGCCGTAGC
GACGCTTTACAAACAGGGCGGCGTGGGCCGCTTTTACGAGGGACTGGGTT
TTGCGCTGATTCAAGGGCCCTTGTCCCGCTTTGGTTCGACGGCGGCAAAC
GACGGGTGCCGTGCTCTCCTGAAAAATTTCGAGGCTACCAGAGGCCTTCC
CCTCTTCGTTCCTACGGCTATGGCCGCCCTTGCGGCGGGGAGCTGGCGCA
TCTTCCTCATGCCCATCGACACAGCCAAGACGGTGCTGCAGGTGGAGGGG
AATGAAGGCTACCGGTCGCTGATGCGCAGGATCGCGCGAGGGGAGCTCTC
CGCCTTCTACCAGGGGTCTCTGGCTACTGCGGCGGCGGCCGCCCTGGGCC
ATTTTCCCTGGTTCTATGTCTACACTCTGCTCAATGAGGCGATCCGGGCC
CCTGCGGGCTGGCTGGGCAAGCTCTGTCGCAACGCTTTCATTGGCTTCGT
GGCCTCCCTGGTGGCAGACACCCTCACGAACGTGATGAGGGTGGTGAAGA
CGACCAAGCAGGCCACTGCCTCCCTCTCATCCATCTCCTACGCGCAGACC
GTGCAGATAATCCTGGCCGCGGACGGATGGCACGGGTTGTTCGGTAGGGG
GCTGTCGACAAGAATATTGACGAATGGTGAGCAGATCCGGAAGGAGGAGG
GCTCTGAAGGGAAAATGATGGGAGGAGAGCGGAATGGCTTGGATGGCTCT
GGCATGTGTGAGAGTGACAGGGCTCAGGATTGCTGTTCTCTTTTTCACTT
TTCGCCTTCACATCTTCGTGGCGCATGCATTGTCTTGTCATGTACGACAG
GATTACAGTCCATCGTCTTCACTGTTGTTTGGCGCGCTCTCTCGGAGTCT
GCTTTCTTCCAGAGCATGATCGAGTCCCAGTATGAGGACGACGATGACGG
CGCGGGTGAAGATAGTGAGGCATCCGACGGAGCTGAGCGGGCGCATGGCG
TGCAAGAATCTAGCCAAGGGAAGACCGGGAAGACGCCGAGCTGATACCAA
GGCCATCAAAAAGCATGTAGAATTAAATGTTGTACAATGAATTTCAAAAT
ATGTCGACTTTTATCTCGAGAAGACTTTGGTTACCACCTCG
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protein sequence of rna2009

>rna2009-protein ID=rna2009-protein|Name=rna2009|organism=Nannochloropsis gaditana|type=polypeptide|length=426bp
MEYFTNSKLSQSRSDLLTPVGRLIDDATSETLVTPDWSLNLAVCDAVNSD
DEFVGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHAL
VGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTY
MDLRLQGVQFPRLEASSPIFTPPAQPSPATLPASTTPTSEGVVNAETTEI
DRGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIE
SGDEALAEAVGFLEACKERLTEVIEAGMGGGEESMTLTEAVLELALEVHE
EVVEVLGAEKSHAELRGGEGKGENEGAKREGRAETGRTDDLLDFDHHPPP
APMPRPIPTHPDLTATGGENEGQGGDGARVTQSSDPLDIFEAPPAARVCA
LGDAQSLSPAALNALELDDDRDPPVK
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mRNA from alignment at CM002458.1:686509..688046-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2009 ID=rna2009|Name=rna2009|organism=Nannochloropsis gaditana|type=mRNA|length=1538bp|location=Sequence derived from alignment at CM002458.1:686509..688046- (Nannochloropsis gaditana)
ATGGAGTATTTCACAAATTCGAAGTTGTCACAGTCGCGCTCCGACCTGTT
AACGCCAGTAGGACGGCTTATCGACGACGCCACTTCGGAGACTTTAGTGA
CTCCTGATTGGTCCCTGAATTTGGCCGTTTGCGATGCAGTCAACAGCGAT
GACGAGTTTGTTGGTGAGCAAGCAATGCGGGCCTTTCGCCGCAAGCTCCG
GGAAGCCAACCCGAAGGTGCTCCAGCTAACGCTAACCTTGCTGGAGACTG
TGATCAAGAACGCGGACCAGCCAGGGCGTGAAAGTCGTTTCCATGCGCTT
GTTGGGAGCCCCGATTTCCTCGCGAAGATTTCGTCGTTGACAGACGGCAA
AAGAGGCTGGGAGGTTAAAGAACAGGCTTTAGCCCTGCTGCAGCAGTGGG
GGCTGTCATTTGAGAGCAGGCGGGATACGTTGGCGTTTTACTCAACTTAC
ATGGACCTGCGTCTACAAGGCGTCCAGTTTCCTAGGCTAGAAGCCTCGTC
GCCCATCTTCACTCCCCCGGCCCAGCCGTCTCCTGCCACGCTACCGGCTT
CGACCACTCCCACCTCGGAAGGTGTTGTAAATGCCGAGACAACGGAGATC
GACAGAGGTGTCCCCGCCTCGTTGCCATCAGCAGCACCTCGCGCAAGAAC
AGCAGACCGCGACCTGACCAAATTGCAGCAGGATCTTGGAGAAGTACGAG
AAAGGGCGCGCGCGTGTTTCGCGATGTTATCTCACAGCGAGGGCATTGAG
TCGGGGGATGAAGCTTTGGCCGAGGCCGTGGGTTTCTTGGAGGCGTGCAA
AGAGCGCTTAACAGAGGTGATAGAGGCGGGAATGGGAGGGGGGGAAGAGA
GTATGACACTCACAGAGGCGGTTCTGGAACTCGCATTGGAGGTGCACGAA
GAGGTGGTGGAGGTCCTCGGGGCTGAGAAATCCCATGCGGAGCTCCGAGG
TGGCGAAGGGAAAGGAGAGAATGAAGGTGCGAAGAGGGAGGGGAGGGCGG
AAACGGGTCGGACCGATGATTTGCTCGACTTCGATCACCATCCACCGCCC
GCCCCCATGCCGCGGCCCATTCCTACGCACCCGGACCTGACGGCAACGGG
AGGTGAGAATGAGGGCCAGGGCGGAGATGGCGCCCGAGTGACCCAATCGA
GCGACCCGTTGGACATATTTGAGGCACCTCCTGCTGCACGAGTTTGTGCA
CTCGGAGACGCCCAATCTTTAAGCCCGGCGGCTTTGAATGCCTTAGAGTT
GGACGATGACCGCGACCCGCCAGTGAAGTGACCTTACCTCGAACATTTGG
ATAAGTTACGAATACATATCAGGGATAGCAGAGAGACACGACACAAGAAA
TGTATAGATATTTTTGTAAAAGATAAGGTTGGAATCATAAATCAATTATC
AGTCAGTGAAGACACCTTTAAGGGCGTTGTATTCTGGGGGGGTATGGAGT
AAAGTATTCCACTCAAGCAAGACTATCAATTACTTGCGTGCCATTGTTTG
CCAGTAGAAATACGGGCCTTTGAGTGCAGTAATAGCCC
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Coding sequence (CDS) from alignment at CM002458.1:686509..688046-

>rna2009 ID=rna2009|Name=rna2009|organism=Nannochloropsis gaditana|type=CDS|length=1281bp|location=Sequence derived from alignment at CM002458.1:686509..688046- (Nannochloropsis gaditana)
ATGGAGTATTTCACAAATTCGAAGTTGTCACAGTCGCGCTCCGACCTGTT
AACGCCAGTAGGACGGCTTATCGACGACGCCACTTCGGAGACTTTAGTGA
CTCCTGATTGGTCCCTGAATTTGGCCGTTTGCGATGCAGTCAACAGCGAT
GACGAGTTTGTTGGTGAGCAAGCAATGCGGGCCTTTCGCCGCAAGCTCCG
GGAAGCCAACCCGAAGGTGCTCCAGCTAACGCTAACCTTGCTGGAGACTG
TGATCAAGAACGCGGACCAGCCAGGGCGTGAAAGTCGTTTCCATGCGCTT
GTTGGGAGCCCCGATTTCCTCGCGAAGATTTCGTCGTTGACAGACGGCAA
AAGAGGCTGGGAGGTTAAAGAACAGGCTTTAGCCCTGCTGCAGCAGTGGG
GGCTGTCATTTGAGAGCAGGCGGGATACGTTGGCGTTTTACTCAACTTAC
ATGGACCTGCGTCTACAAGGCGTCCAGTTTCCTAGGCTAGAAGCCTCGTC
GCCCATCTTCACTCCCCCGGCCCAGCCGTCTCCTGCCACGCTACCGGCTT
CGACCACTCCCACCTCGGAAGGTGTTGTAAATGCCGAGACAACGGAGATC
GACAGAGGTGTCCCCGCCTCGTTGCCATCAGCAGCACCTCGCGCAAGAAC
AGCAGACCGCGACCTGACCAAATTGCAGCAGGATCTTGGAGAAGTACGAG
AAAGGGCGCGCGCGTGTTTCGCGATGTTATCTCACAGCGAGGGCATTGAG
TCGGGGGATGAAGCTTTGGCCGAGGCCGTGGGTTTCTTGGAGGCGTGCAA
AGAGCGCTTAACAGAGGTGATAGAGGCGGGAATGGGAGGGGGGGAAGAGA
GTATGACACTCACAGAGGCGGTTCTGGAACTCGCATTGGAGGTGCACGAA
GAGGTGGTGGAGGTCCTCGGGGCTGAGAAATCCCATGCGGAGCTCCGAGG
TGGCGAAGGGAAAGGAGAGAATGAAGGTGCGAAGAGGGAGGGGAGGGCGG
AAACGGGTCGGACCGATGATTTGCTCGACTTCGATCACCATCCACCGCCC
GCCCCCATGCCGCGGCCCATTCCTACGCACCCGGACCTGACGGCAACGGG
AGGTGAGAATGAGGGCCAGGGCGGAGATGGCGCCCGAGTGACCCAATCGA
GCGACCCGTTGGACATATTTGAGGCACCTCCTGCTGCACGAGTTTGTGCA
CTCGGAGACGCCCAATCTTTAAGCCCGGCGGCTTTGAATGCCTTAGAGTT
GGACGATGACCGCGACCCGCCAGTGAAGTGA
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Synonyms
Publications