EWM28820.1, cds1993 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|585111243|gb|EWM28820.1| (rab acceptor 1 [Nannochloropsis gaditana]) HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0 Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0 Query: 1 MKLAILLARNSTTNHQAHTKQEYQLASLGNVIVHFSVSMTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 256 MKLAILLARNSTTNHQAHTKQEYQLASLGNVIVHFSVSMTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD Sbjct: 1 MKLAILLARNSTTNHQAHTKQEYQLASLGNVIVHFSVSMTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 256
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|553189297|ref|XP_005854972.1| (rab acceptor 1 [Nannochloropsis gaditana CCMP526] >gi|422294083|gb|EKU21383.1| rab acceptor 1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 454.907 bits (1169), Expect = 2.046e-161 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0 Query: 39 MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 256 MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD Sbjct: 1 MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 218
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|1117566831|ref|XP_019454519.1| (PREDICTED: PRA1 family protein B3-like [Lupinus angustifolius] >gi|1102705132|gb|OIW04119.1| hypothetical protein TanjilG_00679 [Lupinus angustifolius]) HSP 1 Score: 72.0182 bits (175), Expect = 1.609e-11 Identity = 45/148 (30.41%), Postives = 78/148 (52.70%), Query Frame = 0 Query: 57 MQDFTEKLN---KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLF-VCAGVFALLLGWP--QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196 ++ F +L + G RPW E + KP++ E R++ NF ++ NY+ L+A ++ S++ PF++ VL + A F L L P QPL +FGR + +E I T F++ +T LI + +G++++ AH +FR Sbjct: 33 LRSFVSRLTTSLRHGFSQRRPWTELLDRNSMSKPESLSEAYSRIRKNFNYFRVNYVTLIAIALALSLVTHPFSLLVLIGLLASWFFLYLFRPSDQPLVLFGRTFSDRETLGILVVLTVFVIFLTTVGSLLISALMVGLAIVCAHGAFR 180
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|727447702|ref|XP_010505459.1| (PREDICTED: PRA1 family protein B4 [Camelina sativa] >gi|727470342|ref|XP_010517129.1| PREDICTED: PRA1 family protein B4 [Camelina sativa]) HSP 1 Score: 71.633 bits (174), Expect = 2.343e-11 Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0 Query: 66 KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGW---------PQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196 K GL RPW E A L KP++ + R++ N+ +K NY+ + I+ +S++ PF++ V +C LL W QPL +FGR + +E F+ F++ +T L+ + +GV+LI AH +FR Sbjct: 49 KNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSL-VFLLC-----LLASWLFLYMFRPTDQPLVVFGRTFSDRETLGCLILFSIFVVFLTDVGSVLVSAMMVGVALICAHGAFR 184
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|727454618|ref|XP_010509184.1| (PREDICTED: PRA1 family protein B4-like [Camelina sativa]) HSP 1 Score: 71.2478 bits (173), Expect = 3.013e-11 Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 0 Query: 66 KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGW---------PQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196 K G RPW E A L KP++ + R++ N+ +K NY+ + I+ +S++ PF++ V +C LL W QPL +FGR T +E F+ F++ +T L+ + +GV+LI AH +FR Sbjct: 49 KNGFSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSL-VFLLC-----LLASWLFLYMFRPTDQPLVVFGRTFTDRETLGCLILFSIFVVFLTDVGSVLVSAMMVGVALICAHGAFR 184
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|1045405615|dbj|GAU13900.1| (hypothetical protein TSUD_262270 [Trifolium subterraneum]) HSP 1 Score: 70.8626 bits (172), Expect = 3.593e-11 Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 0 Query: 57 MQDFTEKLNKWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFA----LLLGWP--QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196 + + TE L GL RPW E KP++ E R++ N+ ++ NY ++AGI+ S++ +PF+ L + G+ A L L P +PL IFGR T E I ++ T F++ +T L+ + LGV+ + H +FR Sbjct: 41 INNLTESLRN-GLAQRRPWTELVDRSAFSKPESFSEASIRVRKNYSYFRVNYYAIVAGILGVSLLTNPFS---LILLVGLLASWTFLYLFRPSDRPLVIFGRTFTDFETLGILSALTLFVVFLTSVGSVLVSALMLGVAAVCVHGAFR 184
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|357468473|ref|XP_003604521.1| (PRA1 (prenylated RAB acceptor) family protein [Medicago truncatula] >gi|922324709|ref|XP_013441747.1| PRA1 (prenylated RAB acceptor) family protein [Medicago truncatula] >gi|355505576|gb|AES86718.1| PRA1 (prenylated RAB acceptor) family protein [Medicago truncatula] >gi|657369231|gb|KEH15772.1| PRA1 (prenylated RAB acceptor) family protein [Medicago truncatula]) HSP 1 Score: 70.8626 bits (172), Expect = 3.859e-11 Identity = 44/151 (29.14%), Postives = 76/151 (50.33%), Query Frame = 0 Query: 57 MQDFTEKLNKWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWP---------QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196 + + +E L GL RPW E KP++ + R++ N+ ++ NY ++AGI++ S++ +PF++ +L LL W +PL +FGR T E MI + T F++ +T L+ + LGVS++ H +FR Sbjct: 45 INNLSESLRN-GLAQRRPWTELVDRSAFSKPESFSDATLRVRKNYSYFRVNYYAVVAGILAVSLLTNPFSLILLI------GLLASWTFLYLFRPTDRPLVLFGRTFTDFETLMILSGLTIFVVFLTSVGSVLVSALMLGVSVVCLHGAFR 188
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|565471420|ref|XP_006293512.1| (hypothetical protein CARUB_v10024028mg [Capsella rubella] >gi|482562220|gb|EOA26410.1| hypothetical protein CARUB_v10024028mg [Capsella rubella]) HSP 1 Score: 70.4774 bits (171), Expect = 4.950e-11 Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 66 KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVC--AGVFALLLGWP--QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196 K GL RPW E A L KP++ + R++ N+ +K NY+ + I+ +S++ PF++ V +C A L L P QP+ +FGR + +E F+ F++ +T L+ + +GV+LI AH +FR Sbjct: 48 KNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSL-VFLLCLLASWLFLYLFRPTDQPIVVFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMVGVALICAHGAFR 183
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|1190973410|ref|XP_020882757.1| (PRA1 family protein B4 [Arabidopsis lyrata subsp. lyrata] >gi|297327428|gb|EFH57848.1| prenylated rab acceptor family protein [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 70.4774 bits (171), Expect = 5.754e-11 Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 66 KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVC--AGVFALLLGWP--QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196 K GL RPW E A L KP++ + R++ N+ +K NY+ + I+ +S++ PF++ V +C A L L P QP+ +FGR + +E F+ F++ +T L+ + +GV+LI AH +FR Sbjct: 48 KNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSL-VFLLCLLASWLFLYLFRPTDQPIVVFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMVGVALICAHGAFR 183
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|567214093|ref|XP_006411049.1| (hypothetical protein EUTSA_v10017219mg [Eutrema salsugineum] >gi|557112218|gb|ESQ52502.1| hypothetical protein EUTSA_v10017219mg [Eutrema salsugineum]) HSP 1 Score: 70.0922 bits (170), Expect = 6.688e-11 Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 66 KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVC--AGVFALLLGWP--QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196 K GL RPW E A L KP++ + R++ N+ +K NY+ + I+ +S++ PF++ V +C A L L P QP+ + GR L+ +E F+ F++ +T L+ + +GV+LI AH +FR Sbjct: 48 KNGLSQRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSL-VFLLCLLASWLFLYLFRPSDQPIVVLGRTLSDRETLGCLILFSIFVIFLTDVGSVLVSAMMVGVALICAHGAFR 183 The following BLAST results are available for this feature:
BLAST of EWM28820.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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