EWM28820.1, cds1993 (CDS) Nannochloropsis gaditana

Overview
NameEWM28820.1
Unique Namecds1993
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:659276..659280 +
Alignment locationCM002458.1:659539..659674 +
Alignment locationCM002458.1:659870..660218 +
Alignment locationCM002458.1:660311..660382 +
Alignment locationCM002458.1:660590..660681 +
Alignment locationCM002458.1:660813..660929 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28820.1
Productrab acceptor 1
Orig transcript idgnl|cribi|Naga_100002g20.4939.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:659276..659280 +
CM002458.1supercontigCM002458.1:659539..659674 +
CM002458.1supercontigCM002458.1:659870..660218 +
CM002458.1supercontigCM002458.1:660311..660382 +
CM002458.1supercontigCM002458.1:660590..660681 +
CM002458.1supercontigCM002458.1:660813..660929 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR004895Prenylated_rab_accept_PRA1
Homology
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|585111243|gb|EWM28820.1| (rab acceptor 1 [Nannochloropsis gaditana])

HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0
Query:    1 MKLAILLARNSTTNHQAHTKQEYQLASLGNVIVHFSVSMTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 256
            MKLAILLARNSTTNHQAHTKQEYQLASLGNVIVHFSVSMTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD
Sbjct:    1 MKLAILLARNSTTNHQAHTKQEYQLASLGNVIVHFSVSMTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 256          
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|553189297|ref|XP_005854972.1| (rab acceptor 1 [Nannochloropsis gaditana CCMP526] >gi|422294083|gb|EKU21383.1| rab acceptor 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 454.907 bits (1169), Expect = 2.046e-161
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
Query:   39 MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 256
            MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD
Sbjct:    1 MTMRDVIGDFKTDMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCSGHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSMSRDGRD 218          
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|1117566831|ref|XP_019454519.1| (PREDICTED: PRA1 family protein B3-like [Lupinus angustifolius] >gi|1102705132|gb|OIW04119.1| hypothetical protein TanjilG_00679 [Lupinus angustifolius])

HSP 1 Score: 72.0182 bits (175), Expect = 1.609e-11
Identity = 45/148 (30.41%), Postives = 78/148 (52.70%), Query Frame = 0
Query:   57 MQDFTEKLN---KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLF-VCAGVFALLLGWP--QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196
            ++ F  +L    + G    RPW E      + KP++  E   R++ NF  ++ NY+ L+A  ++ S++  PF++ VL  + A  F L L  P  QPL +FGR  + +E   I    T F++ +T     LI +  +G++++ AH +FR
Sbjct:   33 LRSFVSRLTTSLRHGFSQRRPWTELLDRNSMSKPESLSEAYSRIRKNFNYFRVNYVTLIAIALALSLVTHPFSLLVLIGLLASWFFLYLFRPSDQPLVLFGRTFSDRETLGILVVLTVFVIFLTTVGSLLISALMVGLAIVCAHGAFR 180          
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|727447702|ref|XP_010505459.1| (PREDICTED: PRA1 family protein B4 [Camelina sativa] >gi|727470342|ref|XP_010517129.1| PREDICTED: PRA1 family protein B4 [Camelina sativa])

HSP 1 Score: 71.633 bits (174), Expect = 2.343e-11
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 0
Query:   66 KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGW---------PQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196
            K GL   RPW E A    L KP++  +   R++ N+  +K NY+ +   I+ +S++  PF++ V  +C     LL  W          QPL +FGR  + +E       F+ F++ +T     L+ +  +GV+LI AH +FR
Sbjct:   49 KNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSL-VFLLC-----LLASWLFLYMFRPTDQPLVVFGRTFSDRETLGCLILFSIFVVFLTDVGSVLVSAMMVGVALICAHGAFR 184          
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|727454618|ref|XP_010509184.1| (PREDICTED: PRA1 family protein B4-like [Camelina sativa])

HSP 1 Score: 71.2478 bits (173), Expect = 3.013e-11
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 0
Query:   66 KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGW---------PQPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196
            K G    RPW E A    L KP++  +   R++ N+  +K NY+ +   I+ +S++  PF++ V  +C     LL  W          QPL +FGR  T +E       F+ F++ +T     L+ +  +GV+LI AH +FR
Sbjct:   49 KNGFSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSL-VFLLC-----LLASWLFLYMFRPTDQPLVVFGRTFTDRETLGCLILFSIFVVFLTDVGSVLVSAMMVGVALICAHGAFR 184          
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|1045405615|dbj|GAU13900.1| (hypothetical protein TSUD_262270 [Trifolium subterraneum])

HSP 1 Score: 70.8626 bits (172), Expect = 3.593e-11
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 0
Query:   57 MQDFTEKLNKWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFA----LLLGWP--QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196
            + + TE L   GL   RPW E        KP++  E   R++ N+  ++ NY  ++AGI+  S++ +PF+   L +  G+ A    L L  P  +PL IFGR  T  E   I ++ T F++ +T     L+ +  LGV+ +  H +FR
Sbjct:   41 INNLTESLRN-GLAQRRPWTELVDRSAFSKPESFSEASIRVRKNYSYFRVNYYAIVAGILGVSLLTNPFS---LILLVGLLASWTFLYLFRPSDRPLVIFGRTFTDFETLGILSALTLFVVFLTSVGSVLVSALMLGVAAVCVHGAFR 184          
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|357468473|ref|XP_003604521.1| (PRA1 (prenylated RAB acceptor) family protein [Medicago truncatula] >gi|922324709|ref|XP_013441747.1| PRA1 (prenylated RAB acceptor) family protein [Medicago truncatula] >gi|355505576|gb|AES86718.1| PRA1 (prenylated RAB acceptor) family protein [Medicago truncatula] >gi|657369231|gb|KEH15772.1| PRA1 (prenylated RAB acceptor) family protein [Medicago truncatula])

HSP 1 Score: 70.8626 bits (172), Expect = 3.859e-11
Identity = 44/151 (29.14%), Postives = 76/151 (50.33%), Query Frame = 0
Query:   57 MQDFTEKLNKWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWP---------QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196
            + + +E L   GL   RPW E        KP++  +   R++ N+  ++ NY  ++AGI++ S++ +PF++ +L        LL  W          +PL +FGR  T  E  MI +  T F++ +T     L+ +  LGVS++  H +FR
Sbjct:   45 INNLSESLRN-GLAQRRPWTELVDRSAFSKPESFSDATLRVRKNYSYFRVNYYAVVAGILAVSLLTNPFSLILLI------GLLASWTFLYLFRPTDRPLVLFGRTFTDFETLMILSGLTIFVVFLTSVGSVLVSALMLGVSVVCLHGAFR 188          
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|565471420|ref|XP_006293512.1| (hypothetical protein CARUB_v10024028mg [Capsella rubella] >gi|482562220|gb|EOA26410.1| hypothetical protein CARUB_v10024028mg [Capsella rubella])

HSP 1 Score: 70.4774 bits (171), Expect = 4.950e-11
Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 0
Query:   66 KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVC--AGVFALLLGWP--QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196
            K GL   RPW E A    L KP++  +   R++ N+  +K NY+ +   I+ +S++  PF++ V  +C  A    L L  P  QP+ +FGR  + +E       F+ F++ +T     L+ +  +GV+LI AH +FR
Sbjct:   48 KNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSL-VFLLCLLASWLFLYLFRPTDQPIVVFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMVGVALICAHGAFR 183          
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|1190973410|ref|XP_020882757.1| (PRA1 family protein B4 [Arabidopsis lyrata subsp. lyrata] >gi|297327428|gb|EFH57848.1| prenylated rab acceptor family protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 70.4774 bits (171), Expect = 5.754e-11
Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 0
Query:   66 KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVC--AGVFALLLGWP--QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196
            K GL   RPW E A    L KP++  +   R++ N+  +K NY+ +   I+ +S++  PF++ V  +C  A    L L  P  QP+ +FGR  + +E       F+ F++ +T     L+ +  +GV+LI AH +FR
Sbjct:   48 KNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSL-VFLLCLLASWLFLYLFRPTDQPIVVFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMVGVALICAHGAFR 183          
BLAST of EWM28820.1 vs. NCBI_GenBank
Match: gi|567214093|ref|XP_006411049.1| (hypothetical protein EUTSA_v10017219mg [Eutrema salsugineum] >gi|557112218|gb|ESQ52502.1| hypothetical protein EUTSA_v10017219mg [Eutrema salsugineum])

HSP 1 Score: 70.0922 bits (170), Expect = 6.688e-11
Identity = 44/137 (32.12%), Postives = 73/137 (53.28%), Query Frame = 0
Query:   66 KWGLKSPRPWNEFA--GILKKPKNKQELEERLQTNFMLYKANYILLLAGIMSWSVIISPFTMGVLFVC--AGVFALLLGWP--QPLEIFGRLLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFR 196
            K GL   RPW E A    L KP++  +   R++ N+  +K NY+ +   I+ +S++  PF++ V  +C  A    L L  P  QP+ + GR L+ +E       F+ F++ +T     L+ +  +GV+LI AH +FR
Sbjct:   48 KNGLSQRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSL-VFLLCLLASWLFLYLFRPSDQPIVVLGRTLSDRETLGCLILFSIFVIFLTDVGSVLVSAMMVGVALICAHGAFR 183          
The following BLAST results are available for this feature:
BLAST of EWM28820.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111243|gb|EWM28820.1|0.000e+0100.00rab acceptor 1 [Nannochloropsis gaditana][more]
gi|553189297|ref|XP_005854972.1|2.046e-161100.00rab acceptor 1 [Nannochloropsis gaditana CCMP526] ... [more]
gi|1117566831|ref|XP_019454519.1|1.609e-1130.41PREDICTED: PRA1 family protein B3-like [Lupinus an... [more]
gi|727447702|ref|XP_010505459.1|2.343e-1130.99PREDICTED: PRA1 family protein B4 [Camelina sativa... [more]
gi|727454618|ref|XP_010509184.1|3.013e-1130.99PREDICTED: PRA1 family protein B4-like [Camelina s... [more]
gi|1045405615|dbj|GAU13900.1|3.593e-1131.76hypothetical protein TSUD_262270 [Trifolium subter... [more]
gi|357468473|ref|XP_003604521.1|3.859e-1129.14PRA1 (prenylated RAB acceptor) family protein [Med... [more]
gi|565471420|ref|XP_006293512.1|4.950e-1132.12hypothetical protein CARUB_v10024028mg [Capsella r... [more]
gi|1190973410|ref|XP_020882757.1|5.754e-1132.12PRA1 family protein B4 [Arabidopsis lyrata subsp. ... [more]
gi|567214093|ref|XP_006411049.1|6.688e-1132.12hypothetical protein EUTSA_v10017219mg [Eutrema sa... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2001rna2001Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications