rna2001, rna2001 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2001
Unique Name	rna2001
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	582
Alignment location	CM002458.1:659276..660929 +

Link to JBrowse

Properties


Property Name	Value
Product	rab acceptor 1
Orig transcript id	gnl\|cribi\|Naga_100002g20.4939.mrna
Orig protein id	gnl\|cribi\|Naga_100002g20.4939
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:659276..660929 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g20	gene1912	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2001	rna2001-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28820.1	cds1993	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:659276..660929+
coding sequence from alignment at CM002458.1:659276..660929+

mRNA sequence

>rna2001 ID=rna2001|Name=rna2001|organism=Nannochloropsis gaditana|type=mRNA|length=582bp
ATGGCGGACCCACCATGGGAGATCCACATGGACCTTCCCTATGGCACCAT
GTCGGACGATGAGGTGTGTAAGCTCGACTTTCCCAAAGTACAGGAAGAAG
AGGGTGGCTTGCTTTTTTTGTGGGTGACAGGACGCGCGATGGAGCGTGCG
CGGGAAATCTTTCAGTACTGGGGATACAAGCAGCTGGAGGAAATCATATG
GATCAAGACCAATCAGCTGCAAAAAGTCATTCGCACCGGCCGAACAGGCC
ACTGGCTAAATCACTCGAAGGAACATTGCTTGGTAGGTGTCAAAGGGGAC
TTCGTCACGGCAGGACTAGAAGGAGGCGGCGGACGTACTCGTGTGAACCA
TTATGTTGACTGCGACGTGATCGTTGCTGAGGCCCGTGAAACAAGTCGCA
AACCCGATGAAATCTACGATATTATCGAACGGCTATGCCCTGATGGTCGT
AAAATAGAGGTTTTTGGTCGCAAACATAATATACGTGAAGGCTGGATTAC
GGTGGGAAACCAGTTGCCTCCCACTCATCTGGTCGGCGACACCCTCGTTC
GATATCGTGAATGGGAAGCAACCGAGCGATAA

protein sequence of rna2001

>rna2001-protein ID=rna2001-protein|Name=rna2001|organism=Nannochloropsis gaditana|type=polypeptide|length=256bp
MKLAILLARNSTTNHQAHTKQEYQLASLGNVIVHFSVSMTMRDVIGDFKT
DMLMSEMQDFTEKLNKWGLKSPRPWNEFAGILKKPKNKQELEERLQTNFM
LYKANYILLLAGIMSWSVIISPFTMGVLFVCAGVFALLLGWPQPLEIFGR
LLTPKEKTMIAASFTFFLLLITGAMVKLIWSFSLGVSLIVAHMSFRPRCS
GHRKGIIDDANLSQSPTKIVEDIESPNNEDSGLNSYHSEIAQLRATAHSM
SRDGRD

mRNA from alignment at CM002458.1:659276..660929+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2001 ID=rna2001|Name=rna2001|organism=Nannochloropsis gaditana|type=mRNA|length=1654bp|location=Sequence derived from alignment at CM002458.1:659276..660929+ (Nannochloropsis gaditana)
ATGAAGTAAAATTTGTCTTCGATCGTTTGAGACTTTGATACTTCACGACG
TAAACACTTCCGGTCTACAATCGCGCATTCTATGTCCAGCTACTAGCTGA
TAATGCCATGTTCCCATATTTCCAGGCCGAACGGAGACCGTGACCGTGat
aaagagaagaaagaacgttcatcgcctccaacctcctggcGCCCGGCTTG
GCCCAGCCGTTACAAAACCGTTACGAAGCGTTCCTCGGccgtcccgcccc
cgcgtGAAACCAGGCTTGCGATTCTCTTGGCGCGCAACTCAACAACAAAC
CATCAAGCACATACAAAACAGGAATATCAGCTTGCGAGTTTGGGGAACGT
CATCGTGCATTTTTCAGTATCTATGACCATGCGTGATGTCATTGGAGATG
TAAGTTCATTGGATGTGTGTACGTGGGTACCTTGAGATATGGATGTTCAG
GGCCATCAATGTGTCTTTTGCGTAAATCAGTGTCAGAGCTGACCTCTGGA
CGTCCATTTTCCGCTTCTGTGCGCTTATCCTGTGCACCCAAAGCAATGAT
GCTTATTGGTATGCGACATACCACCATAATCTTGTTTGAAACAGTTCAAG
ACCGACATGCTCATGTCTGAAATGCAAGACTTCACTGAAAAGCTTAACAA
ATGGGGCCTCAAAAGCCCACGGCCTTGGAACGAGTTTGCAGGCATCCTCA
AGAAACCCAAGAACAAACAAGAATTAGAGGAGCGCCTCCAGACGAACTTC
ATGTTGTACAAGGCAAATTACATTCTATTGCTGGCAGGTATCATGAGTTG
GTCAGTCATCATATCGCCTTTCACAATGGGTGTCCTTTTTGTCTGCGCCG
GTGTTTTTGCCTTGTTGCTTGGATGGCCACAGCCTTTGGAGATCTTTGGA
CGGCTCCTCACGCCAAAGGAGAAAACGATGATTGCTGCTAGCTGTAAGTT
GTCTGTGAGAGTGGCCACATCCGTCTACTCTCCTCACTTTTCTGGCCATG
ACCCCTTATCCATCTGTTTCTCGTCCATCCTATAGtcactttctttctcc
tcctgatCACGGGAGCCATGGTCAAGCTCATATGGAGTTTCTCACTGGGC
GTTTCTCGTACGTATTTGGGGGGCCACCCTGTTAACGCTTCGCTTGCCTG
ACACACCAGTCAGCCCATCCATTTTAAGCTAGCGGCTCAGCTGCTTAAAT
TAGAGCATACTTATACTTAAGAGCCCAACGACTGAGTCCTATTCTTACCT
CGATGAACGAGCACACTGAAAAGTGACAAAGCAGTCTCGCCCAccgtctc
ttttcctctcacAGTTATAGTCGCACACATGTCATTCCGACCGCGATGCT
CGGGACACCGCAAAGGTATCATTGACGACGCCAACTTGTCTCAAAGCCCT
ACAAAGGTATCGGGAACCGCCTGCTGCCCGCAACAATCTCGTTATTTCCA
CTGCAATTTCTCCTCTCATCCTTCTCGAATGTCATTAATTAGACGTCCTG
ATGTTTTCCCCAATCATTCAATGCGCATTATCCGTAGATTGTGGAGGACA
TCGAGTCGCCCAACAACGAGGACAGCGGCCTGAATTCTTATCACTCCGAG
ATAGCCCAGCTCAGAGCGACTGCTCACTCTATGTCACGAGACGGTCGCGA
Ttag

Coding sequence (CDS) from alignment at CM002458.1:659276..660929+

>rna2001 ID=rna2001|Name=rna2001|organism=Nannochloropsis gaditana|type=CDS|length=4626bp|location=Sequence derived from alignment at CM002458.1:659276..660929+ (Nannochloropsis gaditana)
ATGAAGCTTGCGATTCTCTTGGCGCGCAACTCAACAACAAACCATCAAGC
ACATACAAAACAGGAATATCAGCTTGCGAGTTTGGGGAACGTCATCGTGC
ATTTTTCAGTATCTATGACCATGCGTGATGTCATTGGAGATTTCAAGACC
GACATGCTCATGTCTGAAATGCAAGACTTCACTGAAAAGCTTAACAAATG
GGGCCTCAAAAGCCCACGGCCTTGGAACGAGTTTGCAGGCATCCTCAAGA
AACCCAAGAACAAACAAGAATTAGAGGAGCGCCTCCAGACGAACTTCATG
TTGTACAAGGCAAATTACATTCTATTGCTGGCAGGTATCATGAGTTGGTC
AGTCATCATATCGCCTTTCACAATGGGTGTCCTTTTTGTCTGCGCCGGTG
TTTTTGCCTTGTTGCTTGGATGGCCACAGCCTTTGGAGATCTTTGGACGG
CTCCTCACGCCAAAGGAGAAAACGATGATTGCTGCTAGCTtcactttctt
tctcctcctgatCACGGGAGCCATGGTCAAGCTCATATGGAGTTTCTCAC
TGGGCGTTTCTCTTATAGTCGCACACATGTCATTCCGACCGCGATGCTCG
GGACACCGCAAAGGTATCATTGACGACGCCAACTTGTCTCAAAGCCCTAC
AAAGATTGTGGAGGACATCGAGTCGCCCAACAACGAGGACAGCGGCCTGA
ATTCTTATCACTCCGAGATAGCCCAGCTCAGAGCGACTGCTCACTCTATG
TCACGAGACGGTCGCGATtagATGAAGCTTGCGATTCTCTTGGCGCGCAA
CTCAACAACAAACCATCAAGCACATACAAAACAGGAATATCAGCTTGCGA
GTTTGGGGAACGTCATCGTGCATTTTTCAGTATCTATGACCATGCGTGAT
GTCATTGGAGATTTCAAGACCGACATGCTCATGTCTGAAATGCAAGACTT
CACTGAAAAGCTTAACAAATGGGGCCTCAAAAGCCCACGGCCTTGGAACG
AGTTTGCAGGCATCCTCAAGAAACCCAAGAACAAACAAGAATTAGAGGAG
CGCCTCCAGACGAACTTCATGTTGTACAAGGCAAATTACATTCTATTGCT
GGCAGGTATCATGAGTTGGTCAGTCATCATATCGCCTTTCACAATGGGTG
TCCTTTTTGTCTGCGCCGGTGTTTTTGCCTTGTTGCTTGGATGGCCACAG
CCTTTGGAGATCTTTGGACGGCTCCTCACGCCAAAGGAGAAAACGATGAT
TGCTGCTAGCTtcactttctttctcctcctgatCACGGGAGCCATGGTCA
AGCTCATATGGAGTTTCTCACTGGGCGTTTCTCTTATAGTCGCACACATG
TCATTCCGACCGCGATGCTCGGGACACCGCAAAGGTATCATTGACGACGC
CAACTTGTCTCAAAGCCCTACAAAGATTGTGGAGGACATCGAGTCGCCCA
ACAACGAGGACAGCGGCCTGAATTCTTATCACTCCGAGATAGCCCAGCTC
AGAGCGACTGCTCACTCTATGTCACGAGACGGTCGCGATtagATGAAGCT
TGCGATTCTCTTGGCGCGCAACTCAACAACAAACCATCAAGCACATACAA
AACAGGAATATCAGCTTGCGAGTTTGGGGAACGTCATCGTGCATTTTTCA
GTATCTATGACCATGCGTGATGTCATTGGAGATTTCAAGACCGACATGCT
CATGTCTGAAATGCAAGACTTCACTGAAAAGCTTAACAAATGGGGCCTCA
AAAGCCCACGGCCTTGGAACGAGTTTGCAGGCATCCTCAAGAAACCCAAG
AACAAACAAGAATTAGAGGAGCGCCTCCAGACGAACTTCATGTTGTACAA
GGCAAATTACATTCTATTGCTGGCAGGTATCATGAGTTGGTCAGTCATCA
TATCGCCTTTCACAATGGGTGTCCTTTTTGTCTGCGCCGGTGTTTTTGCC
TTGTTGCTTGGATGGCCACAGCCTTTGGAGATCTTTGGACGGCTCCTCAC
GCCAAAGGAGAAAACGATGATTGCTGCTAGCTtcactttctttctcctcc
tgatCACGGGAGCCATGGTCAAGCTCATATGGAGTTTCTCACTGGGCGTT
TCTCTTATAGTCGCACACATGTCATTCCGACCGCGATGCTCGGGACACCG
CAAAGGTATCATTGACGACGCCAACTTGTCTCAAAGCCCTACAAAGATTG
TGGAGGACATCGAGTCGCCCAACAACGAGGACAGCGGCCTGAATTCTTAT
CACTCCGAGATAGCCCAGCTCAGAGCGACTGCTCACTCTATGTCACGAGA
CGGTCGCGATtagATGAAGCTTGCGATTCTCTTGGCGCGCAACTCAACAA
CAAACCATCAAGCACATACAAAACAGGAATATCAGCTTGCGAGTTTGGGG
AACGTCATCGTGCATTTTTCAGTATCTATGACCATGCGTGATGTCATTGG
AGATTTCAAGACCGACATGCTCATGTCTGAAATGCAAGACTTCACTGAAA
AGCTTAACAAATGGGGCCTCAAAAGCCCACGGCCTTGGAACGAGTTTGCA
GGCATCCTCAAGAAACCCAAGAACAAACAAGAATTAGAGGAGCGCCTCCA
GACGAACTTCATGTTGTACAAGGCAAATTACATTCTATTGCTGGCAGGTA
TCATGAGTTGGTCAGTCATCATATCGCCTTTCACAATGGGTGTCCTTTTT
GTCTGCGCCGGTGTTTTTGCCTTGTTGCTTGGATGGCCACAGCCTTTGGA
GATCTTTGGACGGCTCCTCACGCCAAAGGAGAAAACGATGATTGCTGCTA
GCTtcactttctttctcctcctgatCACGGGAGCCATGGTCAAGCTCATA
TGGAGTTTCTCACTGGGCGTTTCTCTTATAGTCGCACACATGTCATTCCG
ACCGCGATGCTCGGGACACCGCAAAGGTATCATTGACGACGCCAACTTGT
CTCAAAGCCCTACAAAGATTGTGGAGGACATCGAGTCGCCCAACAACGAG
GACAGCGGCCTGAATTCTTATCACTCCGAGATAGCCCAGCTCAGAGCGAC
TGCTCACTCTATGTCACGAGACGGTCGCGATtagATGAAGCTTGCGATTC
TCTTGGCGCGCAACTCAACAACAAACCATCAAGCACATACAAAACAGGAA
TATCAGCTTGCGAGTTTGGGGAACGTCATCGTGCATTTTTCAGTATCTAT
GACCATGCGTGATGTCATTGGAGATTTCAAGACCGACATGCTCATGTCTG
AAATGCAAGACTTCACTGAAAAGCTTAACAAATGGGGCCTCAAAAGCCCA
CGGCCTTGGAACGAGTTTGCAGGCATCCTCAAGAAACCCAAGAACAAACA
AGAATTAGAGGAGCGCCTCCAGACGAACTTCATGTTGTACAAGGCAAATT
ACATTCTATTGCTGGCAGGTATCATGAGTTGGTCAGTCATCATATCGCCT
TTCACAATGGGTGTCCTTTTTGTCTGCGCCGGTGTTTTTGCCTTGTTGCT
TGGATGGCCACAGCCTTTGGAGATCTTTGGACGGCTCCTCACGCCAAAGG
AGAAAACGATGATTGCTGCTAGCTtcactttctttctcctcctgatCACG
GGAGCCATGGTCAAGCTCATATGGAGTTTCTCACTGGGCGTTTCTCTTAT
AGTCGCACACATGTCATTCCGACCGCGATGCTCGGGACACCGCAAAGGTA
TCATTGACGACGCCAACTTGTCTCAAAGCCCTACAAAGATTGTGGAGGAC
ATCGAGTCGCCCAACAACGAGGACAGCGGCCTGAATTCTTATCACTCCGA
GATAGCCCAGCTCAGAGCGACTGCTCACTCTATGTCACGAGACGGTCGCG
ATtagATGAAGCTTGCGATTCTCTTGGCGCGCAACTCAACAACAAACCAT
CAAGCACATACAAAACAGGAATATCAGCTTGCGAGTTTGGGGAACGTCAT
CGTGCATTTTTCAGTATCTATGACCATGCGTGATGTCATTGGAGATTTCA
AGACCGACATGCTCATGTCTGAAATGCAAGACTTCACTGAAAAGCTTAAC
AAATGGGGCCTCAAAAGCCCACGGCCTTGGAACGAGTTTGCAGGCATCCT
CAAGAAACCCAAGAACAAACAAGAATTAGAGGAGCGCCTCCAGACGAACT
TCATGTTGTACAAGGCAAATTACATTCTATTGCTGGCAGGTATCATGAGT
TGGTCAGTCATCATATCGCCTTTCACAATGGGTGTCCTTTTTGTCTGCGC
CGGTGTTTTTGCCTTGTTGCTTGGATGGCCACAGCCTTTGGAGATCTTTG
GACGGCTCCTCACGCCAAAGGAGAAAACGATGATTGCTGCTAGCTtcact
ttctttctcctcctgatCACGGGAGCCATGGTCAAGCTCATATGGAGTTT
CTCACTGGGCGTTTCTCTTATAGTCGCACACATGTCATTCCGACCGCGAT
GCTCGGGACACCGCAAAGGTATCATTGACGACGCCAACTTGTCTCAAAGC
CCTACAAAGATTGTGGAGGACATCGAGTCGCCCAACAACGAGGACAGCGG
CCTGAATTCTTATCACTCCGAGATAGCCCAGCTCAGAGCGACTGCTCACT
CTATGTCACGAGACGGTCGCGATtag

Synonyms

Publications