rna1993, rna1993 (mRNA) Nannochloropsis gaditana

Overview
Namerna1993
Unique Namerna1993
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1467
Alignment locationCM002458.1:639792..640415 -

Link to JBrowse

Properties
Property NameValue
Productgpn-loop gtpase 3
Orig transcript idgnl|cribi|Naga_100002g25.4839.mrna
Orig protein idgnl|cribi|Naga_100002g25.4839
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:639792..640415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g25gene1904Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28720.1cds1988Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1993rna1993-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1993 ID=rna1993|Name=rna1993|organism=Nannochloropsis gaditana|type=mRNA|length=1467bp
ATGTACTCCTCCCTAACGAGGGCAACAAGGCCACCCGTTGCGTTGGCAGC
TGCGGCGCAATTGCCTAGGCAATGGCTACCACGCGCTTTTTTGGCAACAT
CGACTCGCATGTCCGCACCATCCACCGCACCAGAGACGAATTGCAATATA
GATCAGGCCACGCTGGGGGCCTTCTGGATGCCTTTTACGGCTAATAAAGC
CTTCAAGCGATCCCCTCGTATCTTGGCCAAGGCCAAAGGCATGCATTATT
GGACCGAAGACGGTCACAAAGTGCTAGATGGTACGGCTGGTCTATGGTGT
GTCAATGCAGGCCACTGTAATGAACGCATTGTGAGTGCCATTCAAAAGCA
GGCTGCAGCACTTGACTTTGCGCCGACCTTCAACATGGGCCATCCCCTGG
CGTTCGAGTACGCACACCGCCTGTGTCAGGAGCTCATGCCAGGCAAAGGT
TTGGATCAAGTATTCTTCACCATGTGTGGCTCTACAGCGGTAGACACAGC
TTTGAAGGTCGCCCTTGCTTACCATAAAGCTCGAGGAGAGGGGTCTCGTT
TTCGGCTTATCGGTCGCGAGCGCGCCTACCATGGCGTGGGCTTTGGAGGC
ATTTCAGTGGGTGGCATGTTGCCTAATCGTCGAGCGTTCGGACCAATGTT
GCCTGGTGTTGATCACCTTCGAACAACCTACGACCGGGAGCACCAAGCGT
TTTCGAAGGGGCAGCCGGAGTGGGGTGCTCATCTGGCGGAGGACCTGGAG
CGACTTGTGGGCCTGCATGACGCGTCCACCATTGCTGCGGTGATCGTTGA
ACCTGTTTCAGGGTCAGCAGGCGTGTTAGTCCCGCCTTACGGGTATTTGA
AGCGGTTGCGTGAGATCTGCGATGCGCACGGTATCCTGCTCATTTTCGAT
GAGGTGATTACCGCTTTCGGACGTCTGGGCAAGGGTATGGGTGCGGAATA
CTTCGGCGTTATTCCCGATATGGTAACTTGTGCCAAGGGTTTGACAAATG
CAGCGGTGCCGGCCGGTGCTACATTCGTCCAGAAGCACGTGTACGACACC
TTCATGGGGGCAACCCCGGGAGACGGGATTGAGCTTTTCCACGGTTACAC
GTATTCCGGCCATCCACTCGCTATGGCTGCCGGCTTGGCCACACTCGATG
TCTATCAGGATGAGGGCTTGTTTGAGAGGGCGGCAGCTCTTGCGCCCTAC
TGGGAGGAGACGCTCCACGCGCTGAAGGGTCATCCCCACGTTGTGGACAT
TCGTAACCTGGGGCTTATGGGGGCGGTGGAACTGGTGCCGAGGGCCGGTA
AGCCTGGTCAACGAGCATTTCAGGTTTTTACCACTGCCCTGCACAAGGGT
GTCATGGTTCGAGTTACTGGCGAGACGATCGCTCTCTCTCCGCCTCTGAT
TGTTGAAAAAGGCCAGATCGACCAGATCGTCACTACTCTAAGCCAGGCGT
TGCATGAGGTAGCCTAG
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protein sequence of rna1993

>rna1993-protein ID=rna1993-protein|Name=rna1993|organism=Nannochloropsis gaditana|type=polypeptide|length=207bp
MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVK
GPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKAD
LVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGF
LPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGDGRTEDEDAMED
NDIQQSL
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mRNA from alignment at CM002458.1:639792..640415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1993 ID=rna1993|Name=rna1993|organism=Nannochloropsis gaditana|type=mRNA|length=624bp|location=Sequence derived from alignment at CM002458.1:639792..640415- (Nannochloropsis gaditana)
ATGGAATATTTATTAGAAAATCTAGAATGGTTGGAGGAGCGTTTGGAGGT
CTTTGCAGAGGGGGATTATCTGGTCTTCGACTGCCCGGGTCAAGTAGAGC
TTTACTCACATATACCTGTCATGAAGCACCTTGTTGATTTCCTTGTCAAG
GGTCCATTGAGCCTCTCAGTTTGTGGCGTTTATTTAATAGACGCACATTT
CATGGTGGATCCAAGCAAATTTGTGGCTGGCGCGTTACTGTGCCTTTCTA
CGATGATCGCTCTGGAGGTGCCCCAAGTCAATATTATCTCAAAGGCGGAT
CTAGTCGATAAGGAGGAGATAGAACGGGTCCTCGACATGGATTCTGCGGC
CATGGTAGCACGCATGGGCCACCTTGCTGCACACGGACGCCTGCAACCGC
TAACGCACACGATTGCCGCGGTGGTGGATGACTACACGTTGGTGGGTTTC
CTCCCGTTGGACCCCAACGATGAGAATAGCTGGGACGCCATTCTAGCACA
GGCAGACATGGCTTTACAGTTCGGGGAGGATTTGGAACCGCGGGAACCGC
GCGATGATGTCGGAGATGGAAGGACGGAAGATGAAGATGCCATGGAAGAT
AATGACATCCAGCAAAGCTTGTAG
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Coding sequence (CDS) from alignment at CM002458.1:639792..640415-

>rna1993 ID=rna1993|Name=rna1993|organism=Nannochloropsis gaditana|type=CDS|length=624bp|location=Sequence derived from alignment at CM002458.1:639792..640415- (Nannochloropsis gaditana)
ATGGAATATTTATTAGAAAATCTAGAATGGTTGGAGGAGCGTTTGGAGGT
CTTTGCAGAGGGGGATTATCTGGTCTTCGACTGCCCGGGTCAAGTAGAGC
TTTACTCACATATACCTGTCATGAAGCACCTTGTTGATTTCCTTGTCAAG
GGTCCATTGAGCCTCTCAGTTTGTGGCGTTTATTTAATAGACGCACATTT
CATGGTGGATCCAAGCAAATTTGTGGCTGGCGCGTTACTGTGCCTTTCTA
CGATGATCGCTCTGGAGGTGCCCCAAGTCAATATTATCTCAAAGGCGGAT
CTAGTCGATAAGGAGGAGATAGAACGGGTCCTCGACATGGATTCTGCGGC
CATGGTAGCACGCATGGGCCACCTTGCTGCACACGGACGCCTGCAACCGC
TAACGCACACGATTGCCGCGGTGGTGGATGACTACACGTTGGTGGGTTTC
CTCCCGTTGGACCCCAACGATGAGAATAGCTGGGACGCCATTCTAGCACA
GGCAGACATGGCTTTACAGTTCGGGGAGGATTTGGAACCGCGGGAACCGC
GCGATGATGTCGGAGATGGAAGGACGGAAGATGAAGATGCCATGGAAGAT
AATGACATCCAGCAAAGCTTGTAG
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Synonyms
Publications