EWM28720.1, cds1988 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|585111143|gb|EWM28720.1| (gpn-loop gtpase 3 [Nannochloropsis gaditana]) HSP 1 Score: 419.853 bits (1078), Expect = 1.417e-148 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 Query: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGDGRTEDEDAMEDNDIQQSL 207 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGDGRTEDEDAMEDNDIQQSL Sbjct: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGDGRTEDEDAMEDNDIQQSL 207
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|673031800|ref|XP_008869861.1| (hypothetical protein H310_06531 [Aphanomyces invadans] >gi|574475012|gb|ETW02013.1| hypothetical protein H310_06531 [Aphanomyces invadans]) HSP 1 Score: 199.519 bits (506), Expect = 9.457e-61 Identity = 90/189 (47.62%), Postives = 138/189 (73.02%), Query Frame = 0 Query: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGD 189 MEYL++NL+WL++ L +++ DY +FDCPGQ+ELYSH+PVMKHL L + S S+CGVYLID+ F+ DPSKF++G L LS M+ LE+P VN+++K DLVD++E+E+ LD S ++ + + A + QPL+ + V++DY++V F+P++ DE S + +L D A+ +GED+EP+EP+DD+ D Sbjct: 78 MEYLIQNLDWLQDLLLEYSDDDYFIFDCPGQIELYSHLPVMKHLCTALQE--WSFSICGVYLIDSLFISDPSKFISGILCSLSAMVQLELPHVNVLTKCDLVDEQELEKYLDPSSGYLLETLTN-ATTNKWQPLSRAVCNVINDYSMVAFVPMNITDEESIEMVLHHIDHAINYGEDVEPKEPKDDMAD 263
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|669154520|ref|XP_008612822.1| (GPN-loop GTPase [Saprolegnia diclina VS20] >gi|530735357|gb|EQC33599.1| GPN-loop GTPase [Saprolegnia diclina VS20]) HSP 1 Score: 198.749 bits (504), Expect = 2.109e-60 Identity = 90/189 (47.62%), Postives = 134/189 (70.90%), Query Frame = 0 Query: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGD 189 MEYL++NL+WL++ L +++ DY +FDCPGQ+ELYSH+PVMK L L G S+CGVYLID+ F+ DPSKF++G L LS M+ LE+P VN+++K DL D+ E+E+ LD S ++ + A + + QPL+ + V++DY++V F+P++ DE S D +L D A+ +GED+EP+EP+DD GD Sbjct: 78 MEYLIQNLDWLQDLLVEYSDDDYFIFDCPGQIELYSHLPVMKSLCAAL--GDWGFSICGVYLIDSLFISDPSKFISGVLCSLSAMVQLELPHVNVLTKCDLADELEVEKYLDPSSGYLLESLTQ-ATNDKWQPLSRAVCNVINDYSMVAFVPMNITDEGSMDVVLQHIDHAINYGEDMEPKEPKDDFGD 263
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|698807574|ref|XP_009836816.1| (hypothetical protein H257_11537 [Aphanomyces astaci] >gi|574108371|gb|ETV73879.1| hypothetical protein H257_11537 [Aphanomyces astaci]) HSP 1 Score: 192.586 bits (488), Expect = 5.113e-58 Identity = 87/189 (46.03%), Postives = 135/189 (71.43%), Query Frame = 0 Query: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGD 189 MEYL++NL+WL++ L +++ DY +FDCPGQ+ELYSH+PVMKHL L + S+CGVYLID+ F+ DP+KF++G L LS M+ LE+P VN+++K DLVD++E+E+ LD S ++ + A + QPL+ + V++DY++V F+P++ DE S + +L D A+ +GED+EP+EP+D+ D Sbjct: 78 MEYLIQNLDWLQDLLLEYSDDDYFIFDCPGQIELYSHLPVMKHLCTALQE--WGFSICGVYLIDSLFISDPAKFISGILCSLSAMVQLELPHVNVLTKCDLVDEQELEKYLDPSSGYLLETLSS-ATTDKWQPLSRAVCNVINDYSMVAFVPMNIQDEESIEMVLHHIDHAINYGEDIEPKEPKDENSD 263
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|330799657|ref|XP_003287859.1| (hypothetical protein DICPUDRAFT_33147 [Dictyostelium purpureum] >gi|325082129|gb|EGC35622.1| hypothetical protein DICPUDRAFT_33147 [Dictyostelium purpureum]) HSP 1 Score: 187.578 bits (475), Expect = 6.871e-56 Identity = 93/204 (45.59%), Postives = 140/204 (68.63%), Query Frame = 0 Query: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDK----EEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGDGRTEDEDAMED 200 MEYL+EN++WL E L + E DYL+ DCPGQ+ELYSHIPVM+ LVD L + L VC V+L+D+ F++D KF++GAL+CLS M+ LE+P +N+++K D++ EIE+ LD++ +V + +L H R + I ++++D++LVGFLPLD D+ S + +L D ++Q+GEDLEP++ + D D EDED +ED Sbjct: 79 MEYLIENMDWLSEELGDY-EDDYLIIDCPGQIELYSHIPVMRSLVDHLQQ--LGYRVCAVFLVDSQFILDNCKFISGALMCLSAMVRLEIPHINVLTKVDVLKSSDQYREIEKFLDLEVHNLVEEL-NLETHNRYHKMNKPIGSLLEDFSLVGFLPLDITDQESLNVLLQHIDNSIQYGEDLEPQDLKSDFPD---EDEDGIED 275
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|698807572|ref|XP_009836815.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574108372|gb|ETV73880.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 184.882 bits (468), Expect = 4.440e-55 Identity = 87/189 (46.03%), Postives = 133/189 (70.37%), Query Frame = 0 Query: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGD 189 MEYL++NL+WL++ L +++ DY +FDCPGQ+ELYSH+PVMKHL L + S+CGVYLID+ F+ DP+KF++G L LS M+ LE+P VN+++K DLVD++E+E+ LD S ++ + A + QPL+ I +DY++V F+P++ DE S + +L D A+ +GED+EP+EP+D+ D Sbjct: 78 MEYLIQNLDWLQDLLLEYSDDDYFIFDCPGQIELYSHLPVMKHLCTALQE--WGFSICGVYLIDSLFISDPAKFISGILCSLSAMVQLELPHVNVLTKCDLVDEQELEKYLDPSSGYLLETLSS-ATTDKWQPLSRAI----NDYSMVAFVPMNIQDEESIEMVLHHIDHAINYGEDIEPKEPKDENSD 259
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|678118030|gb|KFU93299.1| (GPN-loop GTPase 3, partial [Chaetura pelagica]) HSP 1 Score: 183.341 bits (464), Expect = 8.520e-55 Identity = 90/187 (48.13%), Postives = 126/187 (67.38%), Query Frame = 0 Query: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKE---EIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPR 184 MEYL N WLEE L E DY++FDCPGQ+ELY+H+PVMK LV+ L + VCGV+L+D+ FMV+ KF++G L LS MI+LE+PQ+NI++K DL+ K+ EIE+ LD D +M+ ++ R Q LT +I ++DDY +V FLP D +DE S + +L D +Q+GEDLE +EP+ Sbjct: 45 MEYLANNFSWLEESLG-HVEDDYVLFDCPGQIELYTHLPVMKQLVEQLQQ--WEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQINIMTKMDLLSKKAKKEIEKYLDPDMYSMIEDSTNILKSKRFQKLTKSICGLIDDYGMVRFLPFDRSDEESINIVLQHIDFTIQYGEDLEFKEPK 228
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|701421741|ref|XP_010000842.1| (PREDICTED: GPN-loop GTPase 3, partial [Chaetura pelagica]) HSP 1 Score: 183.341 bits (464), Expect = 9.142e-55 Identity = 90/187 (48.13%), Postives = 126/187 (67.38%), Query Frame = 0 Query: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKE---EIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPR 184 MEYL N WLEE L E DY++FDCPGQ+ELY+H+PVMK LV+ L + VCGV+L+D+ FMV+ KF++G L LS MI+LE+PQ+NI++K DL+ K+ EIE+ LD D +M+ ++ R Q LT +I ++DDY +V FLP D +DE S + +L D +Q+GEDLE +EP+ Sbjct: 31 MEYLANNFSWLEESLG-HVEDDYVLFDCPGQIELYTHLPVMKQLVEQLQQW--EFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQINIMTKMDLLSKKAKKEIEKYLDPDMYSMIEDSTNILKSKRFQKLTKSICGLIDDYGMVRFLPFDRSDEESINIVLQHIDFTIQYGEDLEFKEPK 214
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|953496691|emb|CEG42291.1| (gpn-loop gtpase 3 [Plasmopara halstedii]) HSP 1 Score: 183.726 bits (465), Expect = 1.191e-54 Identity = 83/185 (44.86%), Postives = 131/185 (70.81%), Query Frame = 0 Query: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRD 185 MEYL++NL+WL++ L +++ DY +FDCPGQ+ELYSH+PVMK L D L ++C VYLID+ F+ DP+KF++G L LS M+ LE+P +N+ISK DLVD++E+ + LD + ++ + + A + +PL+ I V+DD+++V F+P++ N E S + +L D A+ +GEDLEP+EP++ Sbjct: 71 MEYLVQNLDWLQDLLGEYSDEDYFIFDCPGQIELYSHLPVMKQLCDTLKD--WGFNICCVYLIDSLFIADPTKFISGVLCSLSAMVQLELPHINVISKCDLVDEKEMSKYLDPSGSYLLENLAN-ATDPKWRPLSAAICNVIDDFSMVAFVPMNINREESIETVLMHVDHAINYGEDLEPQEPKN 252
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|675202219|ref|XP_008909994.1| (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|675202221|ref|XP_008909995.1| hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >gi|566017256|gb|ETI40167.1| hypothetical protein, variant 3 [Phytophthora parasitica P1569] >gi|566017257|gb|ETI40168.1| hypothetical protein, variant 4 [Phytophthora parasitica P1569] >gi|567954646|gb|ETK80279.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|567954647|gb|ETK80280.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|567983300|gb|ETL33696.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|567983301|gb|ETL33697.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568012807|gb|ETL86984.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568012808|gb|ETL86985.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568042829|gb|ETM40144.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568042830|gb|ETM40145.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568089760|gb|ETN04600.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|568089761|gb|ETN04601.1| hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >gi|570320948|gb|ETO68896.1| hypothetical protein, variant 3 [Phytophthora parasitica P1976] >gi|570320949|gb|ETO68897.1| hypothetical protein, variant 4 [Phytophthora parasitica P1976] >gi|570944751|gb|ETP10008.1| hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1] >gi|570944752|gb|ETP10009.1| hypothetical protein, variant 4 [Phytophthora parasitica CJ01A1] >gi|570976286|gb|ETP38129.1| hypothetical protein, variant 3 [Phytophthora parasitica P10297] >gi|570976287|gb|ETP38130.1| hypothetical protein, variant 4 [Phytophthora parasitica P10297]) HSP 1 Score: 181.415 bits (459), Expect = 2.005e-54 Identity = 82/189 (43.39%), Postives = 131/189 (69.31%), Query Frame = 0 Query: 1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGD 189 MEYL++NL+WL++ L +++ DY +FDCPGQ+ELYSH+PVMK L D L ++C VYLID+ F+VDP+KF++G L LS M+ LE+P +N+++K DLVD++E+ + LD ++ + + A + +PL+ I V++D+++V F+P++ N E S + +L D A+ +GEDLEP+EP+ D Sbjct: 16 MEYLVQNLDWLQDLLGEYSDEDYFIFDCPGQIELYSHLPVMKQLCDSLKD--WGFNICCVYLIDSLFIVDPTKFISGVLCSLSAMVQLELPHINVLTKCDLVDEKELSKYLDPSEGYLLENLAN-ATDPKWRPLSAAICNVINDFSMVAFVPMNINREESIETVLMHVDHAINYGEDLEPQEPKSHEAD 201 The following BLAST results are available for this feature:
BLAST of EWM28720.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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