EWM28720.1, cds1988 (CDS) Nannochloropsis gaditana

Overview
NameEWM28720.1
Unique Namecds1988
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:639792..640415 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28720.1
Productgpn-loop gtpase 3
Orig transcript idgnl|cribi|Naga_100002g25.4839.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:639792..640415 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR030228Gpn3
IPR027417P-loop_NTPase
IPR004130Gpn
Homology
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|585111143|gb|EWM28720.1| (gpn-loop gtpase 3 [Nannochloropsis gaditana])

HSP 1 Score: 419.853 bits (1078), Expect = 1.417e-148
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGDGRTEDEDAMEDNDIQQSL 207
            MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGDGRTEDEDAMEDNDIQQSL
Sbjct:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGDGRTEDEDAMEDNDIQQSL 207          
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|673031800|ref|XP_008869861.1| (hypothetical protein H310_06531 [Aphanomyces invadans] >gi|574475012|gb|ETW02013.1| hypothetical protein H310_06531 [Aphanomyces invadans])

HSP 1 Score: 199.519 bits (506), Expect = 9.457e-61
Identity = 90/189 (47.62%), Postives = 138/189 (73.02%), Query Frame = 0
Query:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGD 189
            MEYL++NL+WL++ L  +++ DY +FDCPGQ+ELYSH+PVMKHL   L +   S S+CGVYLID+ F+ DPSKF++G L  LS M+ LE+P VN+++K DLVD++E+E+ LD  S  ++  + + A   + QPL+  +  V++DY++V F+P++  DE S + +L   D A+ +GED+EP+EP+DD+ D
Sbjct:   78 MEYLIQNLDWLQDLLLEYSDDDYFIFDCPGQIELYSHLPVMKHLCTALQE--WSFSICGVYLIDSLFISDPSKFISGILCSLSAMVQLELPHVNVLTKCDLVDEQELEKYLDPSSGYLLETLTN-ATTNKWQPLSRAVCNVINDYSMVAFVPMNITDEESIEMVLHHIDHAINYGEDVEPKEPKDDMAD 263          
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|669154520|ref|XP_008612822.1| (GPN-loop GTPase [Saprolegnia diclina VS20] >gi|530735357|gb|EQC33599.1| GPN-loop GTPase [Saprolegnia diclina VS20])

HSP 1 Score: 198.749 bits (504), Expect = 2.109e-60
Identity = 90/189 (47.62%), Postives = 134/189 (70.90%), Query Frame = 0
Query:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGD 189
            MEYL++NL+WL++ L  +++ DY +FDCPGQ+ELYSH+PVMK L   L  G    S+CGVYLID+ F+ DPSKF++G L  LS M+ LE+P VN+++K DL D+ E+E+ LD  S  ++  +   A + + QPL+  +  V++DY++V F+P++  DE S D +L   D A+ +GED+EP+EP+DD GD
Sbjct:   78 MEYLIQNLDWLQDLLVEYSDDDYFIFDCPGQIELYSHLPVMKSLCAAL--GDWGFSICGVYLIDSLFISDPSKFISGVLCSLSAMVQLELPHVNVLTKCDLADELEVEKYLDPSSGYLLESLTQ-ATNDKWQPLSRAVCNVINDYSMVAFVPMNITDEGSMDVVLQHIDHAINYGEDMEPKEPKDDFGD 263          
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|698807574|ref|XP_009836816.1| (hypothetical protein H257_11537 [Aphanomyces astaci] >gi|574108371|gb|ETV73879.1| hypothetical protein H257_11537 [Aphanomyces astaci])

HSP 1 Score: 192.586 bits (488), Expect = 5.113e-58
Identity = 87/189 (46.03%), Postives = 135/189 (71.43%), Query Frame = 0
Query:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGD 189
            MEYL++NL+WL++ L  +++ DY +FDCPGQ+ELYSH+PVMKHL   L +     S+CGVYLID+ F+ DP+KF++G L  LS M+ LE+P VN+++K DLVD++E+E+ LD  S  ++  +   A   + QPL+  +  V++DY++V F+P++  DE S + +L   D A+ +GED+EP+EP+D+  D
Sbjct:   78 MEYLIQNLDWLQDLLLEYSDDDYFIFDCPGQIELYSHLPVMKHLCTALQE--WGFSICGVYLIDSLFISDPAKFISGILCSLSAMVQLELPHVNVLTKCDLVDEQELEKYLDPSSGYLLETLSS-ATTDKWQPLSRAVCNVINDYSMVAFVPMNIQDEESIEMVLHHIDHAINYGEDIEPKEPKDENSD 263          
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|330799657|ref|XP_003287859.1| (hypothetical protein DICPUDRAFT_33147 [Dictyostelium purpureum] >gi|325082129|gb|EGC35622.1| hypothetical protein DICPUDRAFT_33147 [Dictyostelium purpureum])

HSP 1 Score: 187.578 bits (475), Expect = 6.871e-56
Identity = 93/204 (45.59%), Postives = 140/204 (68.63%), Query Frame = 0
Query:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDK----EEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGDGRTEDEDAMED 200
            MEYL+EN++WL E L  + E DYL+ DCPGQ+ELYSHIPVM+ LVD L +  L   VC V+L+D+ F++D  KF++GAL+CLS M+ LE+P +N+++K D++       EIE+ LD++   +V  + +L  H R   +   I ++++D++LVGFLPLD  D+ S + +L   D ++Q+GEDLEP++ + D  D   EDED +ED
Sbjct:   79 MEYLIENMDWLSEELGDY-EDDYLIIDCPGQIELYSHIPVMRSLVDHLQQ--LGYRVCAVFLVDSQFILDNCKFISGALMCLSAMVRLEIPHINVLTKVDVLKSSDQYREIEKFLDLEVHNLVEEL-NLETHNRYHKMNKPIGSLLEDFSLVGFLPLDITDQESLNVLLQHIDNSIQYGEDLEPQDLKSDFPD---EDEDGIED 275          
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|698807572|ref|XP_009836815.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574108372|gb|ETV73880.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 184.882 bits (468), Expect = 4.440e-55
Identity = 87/189 (46.03%), Postives = 133/189 (70.37%), Query Frame = 0
Query:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGD 189
            MEYL++NL+WL++ L  +++ DY +FDCPGQ+ELYSH+PVMKHL   L +     S+CGVYLID+ F+ DP+KF++G L  LS M+ LE+P VN+++K DLVD++E+E+ LD  S  ++  +   A   + QPL+  I    +DY++V F+P++  DE S + +L   D A+ +GED+EP+EP+D+  D
Sbjct:   78 MEYLIQNLDWLQDLLLEYSDDDYFIFDCPGQIELYSHLPVMKHLCTALQE--WGFSICGVYLIDSLFISDPAKFISGILCSLSAMVQLELPHVNVLTKCDLVDEQELEKYLDPSSGYLLETLSS-ATTDKWQPLSRAI----NDYSMVAFVPMNIQDEESIEMVLHHIDHAINYGEDIEPKEPKDENSD 259          
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|678118030|gb|KFU93299.1| (GPN-loop GTPase 3, partial [Chaetura pelagica])

HSP 1 Score: 183.341 bits (464), Expect = 8.520e-55
Identity = 90/187 (48.13%), Postives = 126/187 (67.38%), Query Frame = 0
Query:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKE---EIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPR 184
            MEYL  N  WLEE L    E DY++FDCPGQ+ELY+H+PVMK LV+ L +      VCGV+L+D+ FMV+  KF++G L  LS MI+LE+PQ+NI++K DL+ K+   EIE+ LD D  +M+    ++    R Q LT +I  ++DDY +V FLP D +DE S + +L   D  +Q+GEDLE +EP+
Sbjct:   45 MEYLANNFSWLEESLG-HVEDDYVLFDCPGQIELYTHLPVMKQLVEQLQQ--WEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQINIMTKMDLLSKKAKKEIEKYLDPDMYSMIEDSTNILKSKRFQKLTKSICGLIDDYGMVRFLPFDRSDEESINIVLQHIDFTIQYGEDLEFKEPK 228          
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|701421741|ref|XP_010000842.1| (PREDICTED: GPN-loop GTPase 3, partial [Chaetura pelagica])

HSP 1 Score: 183.341 bits (464), Expect = 9.142e-55
Identity = 90/187 (48.13%), Postives = 126/187 (67.38%), Query Frame = 0
Query:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKE---EIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPR 184
            MEYL  N  WLEE L    E DY++FDCPGQ+ELY+H+PVMK LV+ L +      VCGV+L+D+ FMV+  KF++G L  LS MI+LE+PQ+NI++K DL+ K+   EIE+ LD D  +M+    ++    R Q LT +I  ++DDY +V FLP D +DE S + +L   D  +Q+GEDLE +EP+
Sbjct:   31 MEYLANNFSWLEESLG-HVEDDYVLFDCPGQIELYTHLPVMKQLVEQLQQW--EFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQINIMTKMDLLSKKAKKEIEKYLDPDMYSMIEDSTNILKSKRFQKLTKSICGLIDDYGMVRFLPFDRSDEESINIVLQHIDFTIQYGEDLEFKEPK 214          
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|953496691|emb|CEG42291.1| (gpn-loop gtpase 3 [Plasmopara halstedii])

HSP 1 Score: 183.726 bits (465), Expect = 1.191e-54
Identity = 83/185 (44.86%), Postives = 131/185 (70.81%), Query Frame = 0
Query:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRD 185
            MEYL++NL+WL++ L  +++ DY +FDCPGQ+ELYSH+PVMK L D L       ++C VYLID+ F+ DP+KF++G L  LS M+ LE+P +N+ISK DLVD++E+ + LD   + ++  + + A   + +PL+  I  V+DD+++V F+P++ N E S + +L   D A+ +GEDLEP+EP++
Sbjct:   71 MEYLVQNLDWLQDLLGEYSDEDYFIFDCPGQIELYSHLPVMKQLCDTLKD--WGFNICCVYLIDSLFIADPTKFISGVLCSLSAMVQLELPHINVISKCDLVDEKEMSKYLDPSGSYLLENLAN-ATDPKWRPLSAAICNVIDDFSMVAFVPMNINREESIETVLMHVDHAINYGEDLEPQEPKN 252          
BLAST of EWM28720.1 vs. NCBI_GenBank
Match: gi|675202219|ref|XP_008909994.1| (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|675202221|ref|XP_008909995.1| hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >gi|566017256|gb|ETI40167.1| hypothetical protein, variant 3 [Phytophthora parasitica P1569] >gi|566017257|gb|ETI40168.1| hypothetical protein, variant 4 [Phytophthora parasitica P1569] >gi|567954646|gb|ETK80279.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|567954647|gb|ETK80280.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|567983300|gb|ETL33696.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|567983301|gb|ETL33697.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568012807|gb|ETL86984.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568012808|gb|ETL86985.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568042829|gb|ETM40144.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568042830|gb|ETM40145.1| hypothetical protein, variant 4 [Phytophthora parasitica] >gi|568089760|gb|ETN04600.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|568089761|gb|ETN04601.1| hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >gi|570320948|gb|ETO68896.1| hypothetical protein, variant 3 [Phytophthora parasitica P1976] >gi|570320949|gb|ETO68897.1| hypothetical protein, variant 4 [Phytophthora parasitica P1976] >gi|570944751|gb|ETP10008.1| hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1] >gi|570944752|gb|ETP10009.1| hypothetical protein, variant 4 [Phytophthora parasitica CJ01A1] >gi|570976286|gb|ETP38129.1| hypothetical protein, variant 3 [Phytophthora parasitica P10297] >gi|570976287|gb|ETP38130.1| hypothetical protein, variant 4 [Phytophthora parasitica P10297])

HSP 1 Score: 181.415 bits (459), Expect = 2.005e-54
Identity = 82/189 (43.39%), Postives = 131/189 (69.31%), Query Frame = 0
Query:    1 MEYLLENLEWLEERLEVFAEGDYLVFDCPGQVELYSHIPVMKHLVDFLVKGPLSLSVCGVYLIDAHFMVDPSKFVAGALLCLSTMIALEVPQVNIISKADLVDKEEIERVLDMDSAAMVARMGHLAAHGRLQPLTHTIAAVVDDYTLVGFLPLDPNDENSWDAILAQADMALQFGEDLEPREPRDDVGD 189
            MEYL++NL+WL++ L  +++ DY +FDCPGQ+ELYSH+PVMK L D L       ++C VYLID+ F+VDP+KF++G L  LS M+ LE+P +N+++K DLVD++E+ + LD     ++  + + A   + +PL+  I  V++D+++V F+P++ N E S + +L   D A+ +GEDLEP+EP+    D
Sbjct:   16 MEYLVQNLDWLQDLLGEYSDEDYFIFDCPGQIELYSHLPVMKQLCDSLKD--WGFNICCVYLIDSLFIVDPTKFISGVLCSLSAMVQLELPHINVLTKCDLVDEKELSKYLDPSEGYLLENLAN-ATDPKWRPLSAAICNVINDFSMVAFVPMNINREESIETVLMHVDHAINYGEDLEPQEPKSHEAD 201          
The following BLAST results are available for this feature:
BLAST of EWM28720.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111143|gb|EWM28720.1|1.417e-148100.00gpn-loop gtpase 3 [Nannochloropsis gaditana][more]
gi|673031800|ref|XP_008869861.1|9.457e-6147.62hypothetical protein H310_06531 [Aphanomyces invad... [more]
gi|669154520|ref|XP_008612822.1|2.109e-6047.62GPN-loop GTPase [Saprolegnia diclina VS20] >gi|530... [more]
gi|698807574|ref|XP_009836816.1|5.113e-5846.03hypothetical protein H257_11537 [Aphanomyces astac... [more]
gi|330799657|ref|XP_003287859.1|6.871e-5645.59hypothetical protein DICPUDRAFT_33147 [Dictyosteli... [more]
gi|698807572|ref|XP_009836815.1|4.440e-5546.03hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|678118030|gb|KFU93299.1|8.520e-5548.13GPN-loop GTPase 3, partial [Chaetura pelagica][more]
gi|701421741|ref|XP_010000842.1|9.142e-5548.13PREDICTED: GPN-loop GTPase 3, partial [Chaetura pe... [more]
gi|953496691|emb|CEG42291.1|1.191e-5444.86gpn-loop gtpase 3 [Plasmopara halstedii][more]
gi|675202219|ref|XP_008909994.1|2.005e-5443.39hypothetical protein, variant 3 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1993rna1993Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications