Naga_100002g62, gene1868 (gene) Nannochloropsis gaditana

Overview
NameNaga_100002g62
Unique Namegene1868
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:567457..572187 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100002g62
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:567457..572187 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005515protein binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL106ngnoL106Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03280NO04G03280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna1955rna1955-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide
rna1956rna1956-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna1955rna1955Nannochloropsis gaditana (N. gaditana B-31)mRNA
rna1956rna1956Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna1955

>rna1955-protein ID=rna1955-protein|Name=rna1955|organism=Nannochloropsis gaditana|type=polypeptide|length=1057bp
MEGKRVEDAESTCDQNAQSHKGAAEIPLIKDDAPLLPLALKELLVEGSCM
SFAKPREGMEKFSWACSPDGEIQIIDLCTGTVAVDPTTQGPVKLTAVDGT
PICLALTREQTALAIGMESGKVEFNRVSWENGFPEFHFEDFLVRCTSAVR
DIALSPTSKWAAVGSGDLELRLIEVQSRKATPLRKHDGGVHSLCFDPKEE
YLVSLGTDGCVLIWELATKHCIFSKKVFEGDSTYNLQPGIPKSAWSPDGS
VLALPGSRHPQLLERGTWRVVDSSASRLAHTAEISVLAWAPDGHLLASAG
EDRRLVIWAVPQCGGPALLPAQIYMDKESVNEGIVGASRSRALRQLQWIE
MRQLAVLDCMGFFGIKNVPEDAISTLLSSSVQVISELKGSKRDAATKDAA
PGESRRRTQTPELERHEEKERASSNKNVETPEKRSFSLHRDKHIESTHEG
GEGFEEEESAPDDEPGVLDYDHIKEERETIPPYSHLQGPFLPSSSPVDAL
KRFLVWNLVGNIVSQNLGDHNVIEIEFADASRRPIRFTDHYRFNMGSMAE
EGAIFASATLDEINPDKGDKQVENKDEERSTVFFRPFANYSAKNQWLYTL
PKKEGALCVAVGARWTAVATTRQWVRLFTFSGLQEGVLAMPGPVVTMVGQ
GELLAVFYHGGIPLINHSTGSASQSLHYQLLDIRRTVVVSQGPVCLSPDS
LLIWAGFDNSDMLHIMDSEGLLSSLVRGFSWHWTPILESSRLHRNKMDSF
WPVGVFNGSLMCSLLRGGEEHPPTNPKPLVSSLPFKPPFVMSNNDHALLK
LEEVRFLSKTFLCQKLYQQEVLAFESLEDHDLEADILRNQASYDAHLVKM
IQQAGAAENGERMLELAETLTLPKSLTLAVRIADHYSLPQVAARISDLVA
TRFPPIADIHLSNEETENQDPRGFKDSPMSSRTSMLTNEHDLNNDDINLP
ERAERTDMSADHRDPLFSPARPRASQVSRIGNSSTSFVGRCDAESGISRN
PFAMKDAEGKKPAEKRSCSIAESLAPLMSPSPKKPVLSKSSTFVSEIRSK
KKHDRRA
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protein sequence of rna1956

>rna1956-protein ID=rna1956-protein|Name=rna1956|organism=Nannochloropsis gaditana|type=polypeptide|length=941bp
MESGKVEFNRVSWENGFPEFHFEDFLVRCTSAVRDIALSPTSKWAAVGSG
DLELRLIEVQSRKATPLRKHDGGVHSLCFDPKEEYLVSLGTDGCVLIWEL
ATKHCIFSKKVFEGDSTYNLQPGIPKSAWSPDGSVLALPGSRHPQLLERG
TWRVVDSSASRLAHTAEISVLAWAPDGHLLASAGEDRRLVIWAVPQCGGP
ALLPAQIYMDKESVNEGIVGASRSRALRQLQWIEMRQLAVLDCMGFFGIK
NVPEDAISTLLSSSVQVISELKGSKRDAATKDAAPGESRRRTQTPELERH
EEKERASSNKNVETPEKRSFSLHRDKHIESTHEGGEGFEEEESAPDDEPG
VLDYDHIKEERETIPPYSHLQGPFLPSSSPVDALKRFLVWNLVGNIVSQN
LGDHNVIEIEFADASRRPIRFTDHYRFNMGSMAEEGAIFASATLDEINPD
KGDKQVENKDEERSTVFFRPFANYSAKNQWLYTLPKKEGALCVAVGARWT
AVATTRQWVRLFTFSGLQEGVLAMPGPVVTMVGQGELLAVFYHGGIPLIN
HSTGSASQSLHYQLLDIRRTVVVSQGPVCLSPDSLLIWAGFDNSDMLHIM
DSEGLLSSLVRGFSWHWTPILESSRLHRNKMDSFWPVGVFNGSLMCSLLR
GGEEHPPTNPKPLVSSLPFKPPFVMSNNDHALLKLEEVRFLSKTFLCQKL
YQQEVLAFESLEDHDLEADILRNQASYDAHLVKMIQQAGAAENGERMLEL
AETLTLPKSLTLAVRIADHYSLPQVAARISDLVATRFPPIADIHLSNEET
ENQDPRGFKDSPMSSRTSMLTNEHDLNNDDINLPERAERTDMSADHRDPL
FSPARPRASQVSRIGNSSTSFVGRCDAESGISRNPFAMKDAEGKKPAEKR
SCSIAESLAPLMSPSPKKPVLSKSSTFVSEIRSKKKHDRRA
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Synonyms
Publications