rna1938, rna1938 (mRNA) Nannochloropsis gaditana

Overview
Namerna1938
Unique Namerna1938
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length678
Alignment locationCM002458.1:519171..519938 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g81.4816.mrna
Orig protein idgnl|cribi|Naga_100002g81.4816
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:519171..519938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g81gene1851Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1938rna1938-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28697.1cds1933Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1938 ID=rna1938|Name=rna1938|organism=Nannochloropsis gaditana|type=mRNA|length=678bp
ATGGGCAGGCCCAAGAAGAAGTTGTATGCCGATAGGACGAAATCTTCAAA
GATGGAAGTCCCACTAAAGCCAGACTTGAATAGGAAAAAAAACAAGCACA
TGACGAGGACTATATTTTTCTTTAAAATTGGTCACAGTATAAAACGATGT
AAGATTATTCGAGCCTTTCCGGGACTTACCCTGCTGGCCTTCATTACCGC
TGATGCCTATGCCCACATCTGCTTCCTGGATCATGTTGACATCGTTTGCC
CCGTCACCGATGGCAAGAGTGACGGGCGTGGGGGAGACTTCCTCTTTGAC
CAGACGGACCAATTGTGCCTTCTGCTTTGGAGAGACACGACAAGCGATAA
CAGCAGAAGATGCTTTCATAATCTCAAAGAGGATGACCTTGAGGCCTGGG
TGACTGAAGACATACACCAAGGCGGGACCCTCCATAACAAAAGCGAAATC
GGTGACGTACGAGTATGCCCGCGACAGCCGTCGGTGGGTGTGTCGCGTCG
CCTGTTGAAGTATATCATCTGGCTGTGGCCCTTGCACAGCTTGGGTTTTG
CTCACCATTGCCTTTCTCGCCGCCTTGGTGAAGCGAACATGAATAGGGTA
GGACTTGACAGCGTGGGAAAGTGTTTAAGCATCACATCCCATGCCGATGC
CACATCTTGGGCTCGACGTGTGGCCTGA
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protein sequence of rna1938

>rna1938-protein ID=rna1938-protein|Name=rna1938|organism=Nannochloropsis gaditana|type=polypeptide|length=255bp
MANPSMYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTIWTLPSGGGIY
NQVDYYVLGLAMYGVLILSMNWRLLFEFKTILRPALLPKAASRDSSRGGC
QPRANCSFCGWSLWVWLGSVLSFFLVTLVYSNLLSFAPFFYGVAIESFSM
VSVWLQLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYLLVPTSQNQ
KRHMSQLEPVAESGILTEPPAAMPQLVELPTQDEDLEQGDTKPPGTCQEL
SVPAN
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mRNA from alignment at CM002458.1:519171..519938+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1938 ID=rna1938|Name=rna1938|organism=Nannochloropsis gaditana|type=mRNA|length=768bp|location=Sequence derived from alignment at CM002458.1:519171..519938+ (Nannochloropsis gaditana)
ATGGCAAACCCATCTATGTACATATCAGGGCGCAAAAATCTGGATCTGAG
TGCTTTCCAAGTTGGAAAATGGATTCTTTCTGCACTTTTAGATGGCTTCT
TGGTGTATTTTTTAACGATTTGGACACTACCGTCCGGCGGTGGTATATAT
AATCAAGTTGATTACTACGTGCTTGGCCTGGCAATGTACGGCGTCCTCAT
CTTAAGCATGAATTGGAGACTGCTCTTCGAGTTCAAGACCATCCTTAGAC
CTGCTCTGTTGCCAAAAGCTGCGTCGAGGGATTCGTCTCGCGGCGGATGT
CAACCTCGTGCCAACTGTTCCTTTTGCGGGTGGTCGCTCTGGGTATGGCT
TGGAAGCGTGCTGTCGTTTTTCCTTGTGACGCTTGTCTACAGTAATCTGC
TTTCCTTCGCGCCGTTTTTTTATGGGGTAGCTATTGAATCCTTCAGCATG
GTCAGCGTTTGGTTACAATTACTCCTCATCCCCGTCATCTGTGTTGCGAT
TGTCGCTTTGTACACTTTTCTTGCTGATGAGTTTGCACCTTCCCCTGTCC
AGCTTGGGGTTGAAAAAGCGTATCTCTTGGTGCCTACAAGCCAAAACCAA
AAAAGACACATGTCTCAATTAGAGCCGGTAGCCGAGTCAGGCATTTTAAC
AGAACCTCCAGCAGCCATGCCACAATTAGTGGAACTCCCTACGCAGGATG
AAGACCTGGAGCAAGGAGACACAAAGCCACCTGGGACATGTCAGGAGCTA
AGTGTCCCTGCCAATTAA
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Coding sequence (CDS) from alignment at CM002458.1:519171..519938+

>rna1938 ID=rna1938|Name=rna1938|organism=Nannochloropsis gaditana|type=CDS|length=768bp|location=Sequence derived from alignment at CM002458.1:519171..519938+ (Nannochloropsis gaditana)
ATGGCAAACCCATCTATGTACATATCAGGGCGCAAAAATCTGGATCTGAG
TGCTTTCCAAGTTGGAAAATGGATTCTTTCTGCACTTTTAGATGGCTTCT
TGGTGTATTTTTTAACGATTTGGACACTACCGTCCGGCGGTGGTATATAT
AATCAAGTTGATTACTACGTGCTTGGCCTGGCAATGTACGGCGTCCTCAT
CTTAAGCATGAATTGGAGACTGCTCTTCGAGTTCAAGACCATCCTTAGAC
CTGCTCTGTTGCCAAAAGCTGCGTCGAGGGATTCGTCTCGCGGCGGATGT
CAACCTCGTGCCAACTGTTCCTTTTGCGGGTGGTCGCTCTGGGTATGGCT
TGGAAGCGTGCTGTCGTTTTTCCTTGTGACGCTTGTCTACAGTAATCTGC
TTTCCTTCGCGCCGTTTTTTTATGGGGTAGCTATTGAATCCTTCAGCATG
GTCAGCGTTTGGTTACAATTACTCCTCATCCCCGTCATCTGTGTTGCGAT
TGTCGCTTTGTACACTTTTCTTGCTGATGAGTTTGCACCTTCCCCTGTCC
AGCTTGGGGTTGAAAAAGCGTATCTCTTGGTGCCTACAAGCCAAAACCAA
AAAAGACACATGTCTCAATTAGAGCCGGTAGCCGAGTCAGGCATTTTAAC
AGAACCTCCAGCAGCCATGCCACAATTAGTGGAACTCCCTACGCAGGATG
AAGACCTGGAGCAAGGAGACACAAAGCCACCTGGGACATGTCAGGAGCTA
AGTGTCCCTGCCAATTAA
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Synonyms
Publications