EWM28697.1, cds1933 (CDS) Nannochloropsis gaditana

Overview
NameEWM28697.1
Unique Namecds1933
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:519171..519938 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28697.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g81.4816.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:519171..519938 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0000166nucleotide binding
GO:0004012phospholipid-translocating ATPase activity
GO:0005524ATP binding
GO:0000287magnesium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0015914phospholipid transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006539P-type_ATPase_IV
Homology
BLAST of EWM28697.1 vs. NCBI_GenBank
Match: gi|585111120|gb|EWM28697.1| (hypothetical protein Naga_100002g81 [Nannochloropsis gaditana])

HSP 1 Score: 516.924 bits (1330), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query:    1 MANPSMYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTIWTLPSGGGIYNQVDYYVLGLAMYGVLILSMNWRLLFEFKTILRPALLPKAASRDSSRGGCQPRANCSFCGWSLWVWLGSVLSFFLVTLVYSNLLSFAPFFYGVAIESFSMVSVWLQLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYLLVPTSQNQKRHMSQLEPVAESGILTEPPAAMPQLVELPTQDEDLEQGDTKPPGTCQELSVPAN 255
            MANPSMYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTIWTLPSGGGIYNQVDYYVLGLAMYGVLILSMNWRLLFEFKTILRPALLPKAASRDSSRGGCQPRANCSFCGWSLWVWLGSVLSFFLVTLVYSNLLSFAPFFYGVAIESFSMVSVWLQLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYLLVPTSQNQKRHMSQLEPVAESGILTEPPAAMPQLVELPTQDEDLEQGDTKPPGTCQELSVPAN
Sbjct:    1 MANPSMYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTIWTLPSGGGIYNQVDYYVLGLAMYGVLILSMNWRLLFEFKTILRPALLPKAASRDSSRGGCQPRANCSFCGWSLWVWLGSVLSFFLVTLVYSNLLSFAPFFYGVAIESFSMVSVWLQLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYLLVPTSQNQKRHMSQLEPVAESGILTEPPAAMPQLVELPTQDEDLEQGDTKPPGTCQELSVPAN 255          
BLAST of EWM28697.1 vs. NCBI_GenBank
Match: gi|585112151|gb|EWM29580.1| (putative phospholipid-transporting atpase ia isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 68.1662 bits (165), Expect = 2.148e-9
Identity = 60/214 (28.04%), Postives = 96/214 (44.86%), Query Frame = 0
Query:    6 MYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTI-------WTLPSGGGIYNQVDYYVLGLAMYGVLILSMNWRLLFEFKTILRPALLPKAASRDSSRGGCQPRANCSFCGW-SLWVWLGSVLSFFLVTLVYSNLLSFAPFFYGVAIESFSMVSVWL-QLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYLLVPTSQNQKRHMSQLEPV 210
            +Y+SGR+NLDL+  Q+  W++ A+LD  L++  +          L + GG+    D Y LGL  +  ++L M                L KAA+            N     W + + + GS L F L   VY  L      F+GV  ++ +  S WL  +LL+P +CV +   + +L   F PSPV + VE       TS+ + ++   L  +
Sbjct: 1272 VYMSGRENLDLNMGQMALWLVQAILDSVLIFGFSFGAMNTPHQVLSASGGVD---DLYTLGLITFTGMLLGM----------------LGKAAT------------NTYTWTWVNFFFFFGSALLFCLFLAVYGALPVTGGAFFGVPRQAANHPSFWLIGVLLVPTVCVIVDYTFIYLRLSFFPSPVDIAVEYDRGYFRTSRYKSQNGEHLTAI 1454          
BLAST of EWM28697.1 vs. NCBI_GenBank
Match: gi|676393511|ref|XP_009040033.1| (hypothetical protein AURANDRAFT_31126 [Aureococcus anophagefferens] >gi|323449500|gb|EGB05388.1| hypothetical protein AURANDRAFT_31126 [Aureococcus anophagefferens])

HSP 1 Score: 60.4622 bits (145), Expect = 7.574e-7
Identity = 58/206 (28.16%), Postives = 91/206 (44.17%), Query Frame = 0
Query:    1 MANPSMYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTIWTLPSGGGI--YNQVDYYVLGLAMYGVLILSMNWRLLFEFKTI--LRPALLPKAASRDSSRGGCQPRANCSFCGW--SLWVWLGSVLSFFLVTLVYSNLLSFAPF--------FYGVAIESFSMVSVWLQLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYL 192
            + +P +Y SGR NLDL   +V  W  S LL   L+Y+L   +L  G G   Y+   + V G      + ++MN ++L E +TI  LR A++             +PR   S  G+  S     G  L FF +  + + + S            ++GV  E+      WL +LL+    + +  L+  L  EF    V L VE+ +L
Sbjct:  935 LNHPRLYDSGRLNLDLRVREVVTWQFSGLLHAVLIYYLVQESLQLGSGTSPYDTSAHMVFGTVGMVCITVAMNLKVLMETRTIVHLRSAMV------------AEPRGWLSPLGFVCSHKFVFGFNLGFFYLATIMAAMPSMCETVTMVDQMPYWGVGEETLYQGPPWLTILLVLGTWLVVDWLHRALRWEFGSDAVSLLVERCHL 1128          
The following BLAST results are available for this feature:
BLAST of EWM28697.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111120|gb|EWM28697.1|0.000e+0100.00hypothetical protein Naga_100002g81 [Nannochlorops... [more]
gi|585112151|gb|EWM29580.1|2.148e-928.04putative phospholipid-transporting atpase ia isofo... [more]
gi|676393511|ref|XP_009040033.1|7.574e-728.16hypothetical protein AURANDRAFT_31126 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1938rna1938Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications