EWM28697.1, cds1933 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28697.1 vs. NCBI_GenBank
Match: gi|585111120|gb|EWM28697.1| (hypothetical protein Naga_100002g81 [Nannochloropsis gaditana]) HSP 1 Score: 516.924 bits (1330), Expect = 0.000e+0 Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query: 1 MANPSMYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTIWTLPSGGGIYNQVDYYVLGLAMYGVLILSMNWRLLFEFKTILRPALLPKAASRDSSRGGCQPRANCSFCGWSLWVWLGSVLSFFLVTLVYSNLLSFAPFFYGVAIESFSMVSVWLQLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYLLVPTSQNQKRHMSQLEPVAESGILTEPPAAMPQLVELPTQDEDLEQGDTKPPGTCQELSVPAN 255
MANPSMYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTIWTLPSGGGIYNQVDYYVLGLAMYGVLILSMNWRLLFEFKTILRPALLPKAASRDSSRGGCQPRANCSFCGWSLWVWLGSVLSFFLVTLVYSNLLSFAPFFYGVAIESFSMVSVWLQLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYLLVPTSQNQKRHMSQLEPVAESGILTEPPAAMPQLVELPTQDEDLEQGDTKPPGTCQELSVPAN
Sbjct: 1 MANPSMYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTIWTLPSGGGIYNQVDYYVLGLAMYGVLILSMNWRLLFEFKTILRPALLPKAASRDSSRGGCQPRANCSFCGWSLWVWLGSVLSFFLVTLVYSNLLSFAPFFYGVAIESFSMVSVWLQLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYLLVPTSQNQKRHMSQLEPVAESGILTEPPAAMPQLVELPTQDEDLEQGDTKPPGTCQELSVPAN 255
BLAST of EWM28697.1 vs. NCBI_GenBank
Match: gi|585112151|gb|EWM29580.1| (putative phospholipid-transporting atpase ia isoform 1 [Nannochloropsis gaditana]) HSP 1 Score: 68.1662 bits (165), Expect = 2.148e-9 Identity = 60/214 (28.04%), Postives = 96/214 (44.86%), Query Frame = 0
Query: 6 MYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTI-------WTLPSGGGIYNQVDYYVLGLAMYGVLILSMNWRLLFEFKTILRPALLPKAASRDSSRGGCQPRANCSFCGW-SLWVWLGSVLSFFLVTLVYSNLLSFAPFFYGVAIESFSMVSVWL-QLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYLLVPTSQNQKRHMSQLEPV 210
+Y+SGR+NLDL+ Q+ W++ A+LD L++ + L + GG+ D Y LGL + ++L M L KAA+ N W + + + GS L F L VY L F+GV ++ + S WL +LL+P +CV + + +L F PSPV + VE TS+ + ++ L +
Sbjct: 1272 VYMSGRENLDLNMGQMALWLVQAILDSVLIFGFSFGAMNTPHQVLSASGGVD---DLYTLGLITFTGMLLGM----------------LGKAAT------------NTYTWTWVNFFFFFGSALLFCLFLAVYGALPVTGGAFFGVPRQAANHPSFWLIGVLLVPTVCVIVDYTFIYLRLSFFPSPVDIAVEYDRGYFRTSRYKSQNGEHLTAI 1454
BLAST of EWM28697.1 vs. NCBI_GenBank
Match: gi|676393511|ref|XP_009040033.1| (hypothetical protein AURANDRAFT_31126 [Aureococcus anophagefferens] >gi|323449500|gb|EGB05388.1| hypothetical protein AURANDRAFT_31126 [Aureococcus anophagefferens]) HSP 1 Score: 60.4622 bits (145), Expect = 7.574e-7 Identity = 58/206 (28.16%), Postives = 91/206 (44.17%), Query Frame = 0
Query: 1 MANPSMYISGRKNLDLSAFQVGKWILSALLDGFLVYFLTIWTLPSGGGI--YNQVDYYVLGLAMYGVLILSMNWRLLFEFKTI--LRPALLPKAASRDSSRGGCQPRANCSFCGW--SLWVWLGSVLSFFLVTLVYSNLLSFAPF--------FYGVAIESFSMVSVWLQLLLIPVICVAIVALYTFLADEFAPSPVQLGVEKAYL 192
+ +P +Y SGR NLDL +V W S LL L+Y+L +L G G Y+ + V G + ++MN ++L E +TI LR A++ +PR S G+ S G L FF + + + + S ++GV E+ WL +LL+ + + L+ L EF V L VE+ +L
Sbjct: 935 LNHPRLYDSGRLNLDLRVREVVTWQFSGLLHAVLIYYLVQESLQLGSGTSPYDTSAHMVFGTVGMVCITVAMNLKVLMETRTIVHLRSAMV------------AEPRGWLSPLGFVCSHKFVFGFNLGFFYLATIMAAMPSMCETVTMVDQMPYWGVGEETLYQGPPWLTILLVLGTWLVVDWLHRALRWEFGSDAVSLLVERCHL 1128 The following BLAST results are available for this feature:
BLAST of EWM28697.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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