EWM28800.1, cds1916 (CDS) Nannochloropsis gaditana

Overview
NameEWM28800.1
Unique Namecds1916
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:469881..469999 +
Alignment locationCM002458.1:470118..470442 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28800.1
Productheat shock protein hsp20
Orig transcript idgnl|cribi|Naga_100002g99.4919.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:469881..469999 +
CM002458.1supercontigCM002458.1:470118..470442 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR031107HSP20
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Homology
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|585111223|gb|EWM28800.1| (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 304.679 bits (779), Expect = 7.105e-105
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query:    1 MFGHPGHLLTFDQGGMNSDMARHLVHHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQSYPFTK 147
            MFGHPGHLLTFDQGGMNSDMARHLVHHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQSYPFTK
Sbjct:    1 MFGHPGHLLTFDQGGMNSDMARHLVHHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQSYPFTK 147          
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|973091078|gb|KUK50979.1| (Heat shock protein Hsp20 [candidate division TA06 bacterium 32_111] >gi|973145187|gb|KUK88264.1| Heat shock protein Hsp20 [candidate division TA06 bacterium 34_109])

HSP 1 Score: 106.686 bits (265), Expect = 1.206e-26
Identity = 51/118 (43.22%), Postives = 80/118 (67.80%), Query Frame = 0
Query:   24 LVHHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQ 141
            ++   Y  + +  MDISETD+EF + V+LPG KKEDI +S+D+++LT++ ER+ E  E  + FH  ER  GK  RS+ LP+  D D+++A + DG+L I +  K EK + K+I+I+D+
Sbjct:   33 MLQPYYESNWTPSMDISETDKEFFVTVELPGLKKEDITLSIDNNVLTIEGERKSEKEEKGKTFHRIERSYGKFYRSVTLPKKVDEDNIKASFKDGLLNITI-PKVEKEKVKNIEISDK 149          
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|506368285|ref|WP_015888004.1| (Hsp20/alpha crystallin family protein [Sinorhizobium fredii] >gi|227820165|ref|YP_002824136.1| HSP16 heat shock protein (plasmid) [Sinorhizobium fredii NGR234] >gi|227339164|gb|ACP23383.1| heat shock protein 16 (plasmid) [Sinorhizobium fredii NGR234])

HSP 1 Score: 100.138 bits (248), Expect = 1.310e-23
Identity = 45/102 (44.12%), Postives = 71/102 (69.61%), Query Frame = 0
Query:   37 MDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138
            +D+SET+ E RI  +LPG K ED+D+S++DD LT++ E++ E  ++ EN+H  ER  G  +RS+RLP S D D +RA +ADGVL + + K  E+ + + I++
Sbjct:   60 IDVSETENEVRICAELPGVKDEDVDVSLNDDTLTIRAEKKFERKDEKENYHFMERSYGTFQRSLRLPYSVDADKIRADFADGVLTVTLPKGPEQEKRRKIQV 161          
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|1094021687|ref|WP_071017625.1| (type III effector protein [Ensifer sp. LCM 4579] >gi|1092370428|gb|OHV80927.1| type III effector protein [Ensifer sp. LCM 4579])

HSP 1 Score: 99.7525 bits (247), Expect = 1.495e-23
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 0
Query:   37 MDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138
            +D+SET+ + RI  +LPG ++EDID+S++DD LT++ E++ E  +D EN+H  ER  G  +RS+RLP S D D V A +ADGVL + + K AE  +S  I++
Sbjct:   60 IDVSETENQVRICAELPGVREEDIDVSLNDDTLTIRGEKKFERKDDKENYHFMERSYGTFQRSLRLPYSVDPDKVEADFADGVLTVTLPKGAEPERSXKIQV 161          
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|653064251|ref|WP_027315564.1| (type III effector protein [Microvirga flocculans])

HSP 1 Score: 100.138 bits (248), Expect = 1.714e-23
Identity = 44/102 (43.14%), Postives = 74/102 (72.55%), Query Frame = 0
Query:   37 MDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138
            M++SET++E RI  +LPG  ++DID+S+DDD+LT++ E++ E S++ ENFH  ER  G  +RS+RLP   + + VRA + +GVL + + K A++ +S+ I++
Sbjct:   61 MNVSETEKEIRITAELPGVTEQDIDVSLDDDVLTIRGEKKFERSDEKENFHFVERSYGTFQRSVRLPFPINPEQVRAHFENGVLTVTLPKTAQQERSRRIQV 162          
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|1063908250|ref|WP_069457627.1| (type III effector protein [Ensifer sp. YIC4027] >gi|1063643340|gb|ODR92110.1| type III effector protein [Ensifer sp. YIC4027])

HSP 1 Score: 99.7525 bits (247), Expect = 1.956e-23
Identity = 46/102 (45.10%), Postives = 73/102 (71.57%), Query Frame = 0
Query:   37 MDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138
            +D+SET+ + RI  +LPG ++EDID+S++DD LT++ E++ E  ++ EN+H  ER  G  +RS+RLP S D D V A +ADGVL + + K AE+ +S+ I++
Sbjct:   60 IDVSETENQVRICAELPGVREEDIDVSLNDDTLTIRGEKKFERKDEKENYHFMERSYGTFQRSLRLPYSVDPDKVEADFADGVLTVTLPKGAEQERSRKIQV 161          
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|656038357|ref|WP_029077296.1| (type III effector protein [Kaistia adipata])

HSP 1 Score: 98.9821 bits (245), Expect = 1.992e-23
Identity = 44/103 (42.72%), Postives = 72/103 (69.90%), Query Frame = 0
Query:   36 QMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138
            Q+++SETD+E RI  +LPG  ++D+++++DDD+LT++ E+R E  ED EN+H  ER  G+  RS+RLP+S   D VRA   +GVL + + K A + +++ I +
Sbjct:   56 QINVSETDKEIRITAELPGVAEKDVEVTLDDDVLTIRGEKRMEQKEDRENYHFVERSFGRFMRSLRLPQSVLRDQVRANVENGVLTVVLPKNAAQEKTRHIPV 158          
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|506411631|ref|WP_015931350.1| (type III effector protein [Methylobacterium nodulans] >gi|219949328|gb|ACL59720.1| heat shock protein Hsp20 [Methylobacterium nodulans ORS 2060])

HSP 1 Score: 99.3673 bits (246), Expect = 2.662e-23
Identity = 48/111 (43.24%), Postives = 75/111 (67.57%), Query Frame = 0
Query:   30 AHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSE--DTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138
             H  +  M++SETD+E RI  +LPG   +DID+S+DDD+LT++ E+R E S+  + ENFH  ER  G  +RS+RLP   D + V+A + +GVL I + K A++ +S+ I++
Sbjct:   52 GHFINAHMNVSETDKEIRITAELPGVTDKDIDVSLDDDVLTIRGEKRFEQSKGGEKENFHFVERSYGTFQRSLRLPFPVDAEQVKASFENGVLMITLPKTAQQERSRRIQV 162          
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|739156956|ref|WP_037021148.1| (type III effector protein [Rhizobiales bacterium YIM 77505])

HSP 1 Score: 98.2117 bits (243), Expect = 7.013e-23
Identity = 46/114 (40.35%), Postives = 76/114 (66.67%), Query Frame = 0
Query:   37 MDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI------TDQSYP 144
            M++SET+ E RI V+LPG  ++DID+S+++D+LT++ E++ E   + ENFH  ER  G  +RS+RLP   D + V+A + +GVL I + K A++ +S+ I++       +QS P
Sbjct:   61 MNVSETENEIRITVELPGVSEQDIDVSLNEDVLTIRGEKKFEQQNEKENFHFVERSYGAFQRSLRLPFPVDPEQVKASFENGVLAITLPKTAQQERSRRIQVQPGGQKAEQSAP 174          
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|516954033|ref|WP_018182165.1| (hypothetical protein [Kaistia granuli])

HSP 1 Score: 97.4413 bits (241), Expect = 7.122e-23
Identity = 44/103 (42.72%), Postives = 72/103 (69.90%), Query Frame = 0
Query:   36 QMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138
            Q+++SETD+E RI  +LPG  ++D+++++DDD+LT++ E+R E  E+ EN+H  ER  G+  RSIRLP+S   D VRA   +GVL + + K A + +++ I +
Sbjct:   56 QINVSETDKEIRITAELPGVAEKDVEVTLDDDMLTIRGEKRMEQKEERENYHFVERSFGRFTRSIRLPQSILRDQVRANVENGVLTVVLPKNAAQEKTRHIPV 158          
The following BLAST results are available for this feature:
BLAST of EWM28800.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111223|gb|EWM28800.1|7.105e-105100.00heat shock protein hsp20 [Nannochloropsis gaditana... [more]
gi|973091078|gb|KUK50979.1|1.206e-2643.22Heat shock protein Hsp20 [candidate division TA06 ... [more]
gi|506368285|ref|WP_015888004.1|1.310e-2344.12Hsp20/alpha crystallin family protein [Sinorhizobi... [more]
gi|1094021687|ref|WP_071017625.1|1.495e-2346.08type III effector protein [Ensifer sp. LCM 4579] >... [more]
gi|653064251|ref|WP_027315564.1|1.714e-2343.14type III effector protein [Microvirga flocculans][more]
gi|1063908250|ref|WP_069457627.1|1.956e-2345.10type III effector protein [Ensifer sp. YIC4027] >g... [more]
gi|656038357|ref|WP_029077296.1|1.992e-2342.72type III effector protein [Kaistia adipata][more]
gi|506411631|ref|WP_015931350.1|2.662e-2343.24type III effector protein [Methylobacterium nodula... [more]
gi|739156956|ref|WP_037021148.1|7.013e-2340.35type III effector protein [Rhizobiales bacterium Y... [more]
gi|516954033|ref|WP_018182165.1|7.122e-2342.72hypothetical protein [Kaistia granuli][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1921rna1921Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications