EWM28800.1, cds1916 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|585111223|gb|EWM28800.1| (heat shock protein hsp20 [Nannochloropsis gaditana]) HSP 1 Score: 304.679 bits (779), Expect = 7.105e-105 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 Query: 1 MFGHPGHLLTFDQGGMNSDMARHLVHHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQSYPFTK 147 MFGHPGHLLTFDQGGMNSDMARHLVHHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQSYPFTK Sbjct: 1 MFGHPGHLLTFDQGGMNSDMARHLVHHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQSYPFTK 147
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|973091078|gb|KUK50979.1| (Heat shock protein Hsp20 [candidate division TA06 bacterium 32_111] >gi|973145187|gb|KUK88264.1| Heat shock protein Hsp20 [candidate division TA06 bacterium 34_109]) HSP 1 Score: 106.686 bits (265), Expect = 1.206e-26 Identity = 51/118 (43.22%), Postives = 80/118 (67.80%), Query Frame = 0 Query: 24 LVHHPYAHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQ 141 ++ Y + + MDISETD+EF + V+LPG KKEDI +S+D+++LT++ ER+ E E + FH ER GK RS+ LP+ D D+++A + DG+L I + K EK + K+I+I+D+ Sbjct: 33 MLQPYYESNWTPSMDISETDKEFFVTVELPGLKKEDITLSIDNNVLTIEGERKSEKEEKGKTFHRIERSYGKFYRSVTLPKKVDEDNIKASFKDGLLNITI-PKVEKEKVKNIEISDK 149
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|506368285|ref|WP_015888004.1| (Hsp20/alpha crystallin family protein [Sinorhizobium fredii] >gi|227820165|ref|YP_002824136.1| HSP16 heat shock protein (plasmid) [Sinorhizobium fredii NGR234] >gi|227339164|gb|ACP23383.1| heat shock protein 16 (plasmid) [Sinorhizobium fredii NGR234]) HSP 1 Score: 100.138 bits (248), Expect = 1.310e-23 Identity = 45/102 (44.12%), Postives = 71/102 (69.61%), Query Frame = 0 Query: 37 MDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138 +D+SET+ E RI +LPG K ED+D+S++DD LT++ E++ E ++ EN+H ER G +RS+RLP S D D +RA +ADGVL + + K E+ + + I++ Sbjct: 60 IDVSETENEVRICAELPGVKDEDVDVSLNDDTLTIRAEKKFERKDEKENYHFMERSYGTFQRSLRLPYSVDADKIRADFADGVLTVTLPKGPEQEKRRKIQV 161
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|1094021687|ref|WP_071017625.1| (type III effector protein [Ensifer sp. LCM 4579] >gi|1092370428|gb|OHV80927.1| type III effector protein [Ensifer sp. LCM 4579]) HSP 1 Score: 99.7525 bits (247), Expect = 1.495e-23 Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 0 Query: 37 MDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138 +D+SET+ + RI +LPG ++EDID+S++DD LT++ E++ E +D EN+H ER G +RS+RLP S D D V A +ADGVL + + K AE +S I++ Sbjct: 60 IDVSETENQVRICAELPGVREEDIDVSLNDDTLTIRGEKKFERKDDKENYHFMERSYGTFQRSLRLPYSVDPDKVEADFADGVLTVTLPKGAEPERSXKIQV 161
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|653064251|ref|WP_027315564.1| (type III effector protein [Microvirga flocculans]) HSP 1 Score: 100.138 bits (248), Expect = 1.714e-23 Identity = 44/102 (43.14%), Postives = 74/102 (72.55%), Query Frame = 0 Query: 37 MDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138 M++SET++E RI +LPG ++DID+S+DDD+LT++ E++ E S++ ENFH ER G +RS+RLP + + VRA + +GVL + + K A++ +S+ I++ Sbjct: 61 MNVSETEKEIRITAELPGVTEQDIDVSLDDDVLTIRGEKKFERSDEKENFHFVERSYGTFQRSVRLPFPINPEQVRAHFENGVLTVTLPKTAQQERSRRIQV 162
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|1063908250|ref|WP_069457627.1| (type III effector protein [Ensifer sp. YIC4027] >gi|1063643340|gb|ODR92110.1| type III effector protein [Ensifer sp. YIC4027]) HSP 1 Score: 99.7525 bits (247), Expect = 1.956e-23 Identity = 46/102 (45.10%), Postives = 73/102 (71.57%), Query Frame = 0 Query: 37 MDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138 +D+SET+ + RI +LPG ++EDID+S++DD LT++ E++ E ++ EN+H ER G +RS+RLP S D D V A +ADGVL + + K AE+ +S+ I++ Sbjct: 60 IDVSETENQVRICAELPGVREEDIDVSLNDDTLTIRGEKKFERKDEKENYHFMERSYGTFQRSLRLPYSVDPDKVEADFADGVLTVTLPKGAEQERSRKIQV 161
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|656038357|ref|WP_029077296.1| (type III effector protein [Kaistia adipata]) HSP 1 Score: 98.9821 bits (245), Expect = 1.992e-23 Identity = 44/103 (42.72%), Postives = 72/103 (69.90%), Query Frame = 0 Query: 36 QMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138 Q+++SETD+E RI +LPG ++D+++++DDD+LT++ E+R E ED EN+H ER G+ RS+RLP+S D VRA +GVL + + K A + +++ I + Sbjct: 56 QINVSETDKEIRITAELPGVAEKDVEVTLDDDVLTIRGEKRMEQKEDRENYHFVERSFGRFMRSLRLPQSVLRDQVRANVENGVLTVVLPKNAAQEKTRHIPV 158
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|506411631|ref|WP_015931350.1| (type III effector protein [Methylobacterium nodulans] >gi|219949328|gb|ACL59720.1| heat shock protein Hsp20 [Methylobacterium nodulans ORS 2060]) HSP 1 Score: 99.3673 bits (246), Expect = 2.662e-23 Identity = 48/111 (43.24%), Postives = 75/111 (67.57%), Query Frame = 0 Query: 30 AHHPSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSE--DTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138 H + M++SETD+E RI +LPG +DID+S+DDD+LT++ E+R E S+ + ENFH ER G +RS+RLP D + V+A + +GVL I + K A++ +S+ I++ Sbjct: 52 GHFINAHMNVSETDKEIRITAELPGVTDKDIDVSLDDDVLTIRGEKRFEQSKGGEKENFHFVERSYGTFQRSLRLPFPVDAEQVKASFENGVLMITLPKTAQQERSRRIQV 162
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|739156956|ref|WP_037021148.1| (type III effector protein [Rhizobiales bacterium YIM 77505]) HSP 1 Score: 98.2117 bits (243), Expect = 7.013e-23 Identity = 46/114 (40.35%), Postives = 76/114 (66.67%), Query Frame = 0 Query: 37 MDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI------TDQSYP 144 M++SET+ E RI V+LPG ++DID+S+++D+LT++ E++ E + ENFH ER G +RS+RLP D + V+A + +GVL I + K A++ +S+ I++ +QS P Sbjct: 61 MNVSETENEIRITVELPGVSEQDIDVSLNEDVLTIRGEKKFEQQNEKENFHFVERSYGAFQRSLRLPFPVDPEQVKASFENGVLAITLPKTAQQERSRRIQVQPGGQKAEQSAP 174
BLAST of EWM28800.1 vs. NCBI_GenBank
Match: gi|516954033|ref|WP_018182165.1| (hypothetical protein [Kaistia granuli]) HSP 1 Score: 97.4413 bits (241), Expect = 7.122e-23 Identity = 44/103 (42.72%), Postives = 72/103 (69.90%), Query Frame = 0 Query: 36 QMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKI 138 Q+++SETD+E RI +LPG ++D+++++DDD+LT++ E+R E E+ EN+H ER G+ RSIRLP+S D VRA +GVL + + K A + +++ I + Sbjct: 56 QINVSETDKEIRITAELPGVAEKDVEVTLDDDMLTIRGEKRMEQKEERENYHFVERSFGRFTRSIRLPQSILRDQVRANVENGVLTVVLPKNAAQEKTRHIPV 158 The following BLAST results are available for this feature:
BLAST of EWM28800.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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