rna1921, rna1921 (mRNA) Nannochloropsis gaditana

Overview
Namerna1921
Unique Namerna1921
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length764
Alignment locationCM002458.1:469260..470849 +

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Properties
Property NameValue
Productheat shock protein hsp20
Orig transcript idgnl|cribi|Naga_100002g99.4919.mrna
Orig protein idgnl|cribi|Naga_100002g99.4919
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:469260..470849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g99gene1834Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1921rna1921-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28800.1cds1916Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1921 ID=rna1921|Name=rna1921|organism=Nannochloropsis gaditana|type=mRNA|length=764bp
CCGCAAACCCGGTCTAGATACTACACCCTGCCCGGTGCCTGGCTTGTCAC
TCACAGGCGACTACCACGCTACAGGCATCCACTGTGGCAGGGCACATAGA
CTTACGGGGCAAATATGAGCGACGACGAGAAAGATACAGCCAAAAAGGGG
ACGAAAACTTATGAAGACCGGCTTAAAGCGGTGAGTGTTATTTCGAACCC
TTTGGCGGGCAAAAAATTGACCAAAAAGCTCTACAAGCTGGTAAAAAAAG
CCTCAGCCTCCAAGAGCGTGAAACGTGGCGTGAAGGAAGTGGTGAAAGGT
TTGAAAAAGGGAGAGAAAGGGATATGTCTGATTGCAGGAGACATATACCC
TATCGACGTCATCAGCCACTTGGCGGTACTATGCGAGGAGAAGGACACCC
CCTACATATACGTGCCCTCGAAGCATGATCTAGGCAGTGCCGCGGCGGTA
AAGCGGCCCACCAGTTGTGTGCTCGTCAGTGTCAAGGGAAGCGAAAAGGA
TCAAAAGGAGCTTTACGCGAAAATGGCGCTCGAAATTAAGGAAGCGTCGA
AAGAATAAACACTGAAATTAAAATTTATGAACACAAGTTACAGCACATAC
ATTCTCCGATAGCATGATAAAAGTCTTCAATACTGGCTCAGACATGTATG
TGTAAGCTTGGTACTGACTGGAGCGCCTCTACTAGCCGCCCAAAACCTCT
TACCCCAGAGTTTCTAACACAAAATGGGCACTACAAGGACAAGTTCCACC
CATGCGTACTTCTT
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protein sequence of rna1921

>rna1921-protein ID=rna1921-protein|Name=rna1921|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MFGHPGHLLTFDQGGMNSDMARHLVHHPYAHHPSMQMDISETDREFRIQV
DLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSI
RLPRSADTDSVRAQYADGVLRICVEKKAEKGQSKSIKITDQSYPFTK
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mRNA from alignment at CM002458.1:469260..470849+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1921 ID=rna1921|Name=rna1921|organism=Nannochloropsis gaditana|type=mRNA|length=1590bp|location=Sequence derived from alignment at CM002458.1:469260..470849+ (Nannochloropsis gaditana)
TTTTTCCGGCGCAAGGAAGGCCGGAAGCAGGGTGGTGCACGCGCTTTTGC
ACGCTCAGGTGGCCTGGAGACACGAAAAAGTGCTCCACACTAAATGCAAA
CTATTTTCTGACATCGATTTGTGCCCTTGTACGGGCGTGCATTTCTTAAA
ACCTTTAGCAAACTTGCTTGAACCACGCGCTCATCAGATTCTCGCTTAGA
ATTTTCTTACCATGTGGTGTTATGTGCCTTGCAAAACTTCAGTGAAAATG
CATGTATTTCTTCTTCACGCGTGTACAAGCACCACTTATACTAATGGCCA
TGGGTCGGAGACTCAGGTACCGCCTGCGCTCGCCTGGAATAACTTAGAAC
TTGCATGTCTTGCGCCTTCTCGTtcctgctgcctcctccttttcggaCCC
TTATACTTTTCACTCGCAATAGAAAGCTTTCATTCGGTCAGACTTGCTAA
TTGATGCATCCAAGTCGTATTACCCTTTctagggagaagaaaaagttgGG
TGCTATTTGAACAGAAGCGTTATCTGCATCGTTTCCCATTTCTGACTTGT
CCCGTTTCCTCTAACTCGCAACTTCACGTTTAAACAGCAGGGCAGATCCA
ATTCCGGAATCCATTCGACATATGTTTGGTCATCCAGGCCATTTGCTTAC
TTTTgatcaaggagggatgaaCTCGGACATGGCTCGACACTTGGTGCATC
ATCCCTATGCGCACCATCCCAGCATGCAGATGGACATCAGGTAATGACAC
AGGAATGGGTCCTCCTAGCATACGCCCATTGCAATTTCATCATGGTTATG
GTCTTCATGCATAACAATTTACGGACGCGTGCGTTTCTCTCACCTTGGTT
TCTTCCAGCGAGACCGACCGCGAGTTTCGCATCCAGGTGGACCTTCCGGg
gcacaagaaggaagacataGACATCTCGGTGGATGATGACATCCTTACCG
TGCAGACTGAGCGGCGTGAGGAACACAGTGAAGACACAGAGAATTTCCAC
GTTAAGGAGCGGCGTGTGGGCAAGGCGAAACGCTCCATTCGGCTGCCTCG
GAGTGCAGACACAGACTCTGTGCGTGCCCAATACGCGGATGGCGTTCTAC
GCATTTGTGTGGAAAAAAAGGCCGAAAAAGGCCAGAGCAAAAGCATCAAA
ATCACGGACCAATCCTATCCCTTCACGAAATAAGAACGATGTCGGTGTCT
AGGGCGTGGACAGGTGTCACATCAAGCTTGGGACGAAATGTGTAAGACGG
CAGTCTGGGAGACGGGAATTAGACTTTTTAAAATGGAAAGAATTTGGGAG
AGATAAAGGCTTAGAACTTATCGCATATGATCTAGACCTGGGTCTTGATA
ATCCGAGTGGAGAATTCATGTTTGTTCATAGAGAGTACGGAGTGCGTAAT
GCTTGAGAGTGGGGCCCCGCATGTTGAATCATGCAACTCCGTCGAGGTGT
AAAAGCAGGGCGCATGAAAAAGGGCGTTGGTTTCCTTTGAAAGATAAGTA
GTGTAGGAATGGTCTTGGAATACGAGAGATCGATTAAATATAATATGGAA
GCATGGAAATAATTGCGGGTAGCTTACGCAGCGTTACTGT
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Coding sequence (CDS) from alignment at CM002458.1:469260..470849+

>rna1921 ID=rna1921|Name=rna1921|organism=Nannochloropsis gaditana|type=CDS|length=888bp|location=Sequence derived from alignment at CM002458.1:469260..470849+ (Nannochloropsis gaditana)
ATGTTTGGTCATCCAGGCCATTTGCTTACTTTTgatcaaggagggatgaa
CTCGGACATGGCTCGACACTTGGTGCATCATCCCTATGCGCACCATCCCA
GCATGCAGATGGACATCAGCGAGACCGACCGCGAGTTTCGCATCCAGGTG
GACCTTCCGGggcacaagaaggaagacataGACATCTCGGTGGATGATGA
CATCCTTACCGTGCAGACTGAGCGGCGTGAGGAACACAGTGAAGACACAG
AGAATTTCCACGTTAAGGAGCGGCGTGTGGGCAAGGCGAAACGCTCCATT
CGGCTGCCTCGGAGTGCAGACACAGACTCTGTGCGTGCCCAATACGCGGA
TGGCGTTCTACGCATTTGTGTGGAAAAAAAGGCCGAAAAAGGCCAGAGCA
AAAGCATCAAAATCACGGACCAATCCTATCCCTTCACGAAATAAATGTTT
GGTCATCCAGGCCATTTGCTTACTTTTgatcaaggagggatgaaCTCGGA
CATGGCTCGACACTTGGTGCATCATCCCTATGCGCACCATCCCAGCATGC
AGATGGACATCAGCGAGACCGACCGCGAGTTTCGCATCCAGGTGGACCTT
CCGGggcacaagaaggaagacataGACATCTCGGTGGATGATGACATCCT
TACCGTGCAGACTGAGCGGCGTGAGGAACACAGTGAAGACACAGAGAATT
TCCACGTTAAGGAGCGGCGTGTGGGCAAGGCGAAACGCTCCATTCGGCTG
CCTCGGAGTGCAGACACAGACTCTGTGCGTGCCCAATACGCGGATGGCGT
TCTACGCATTTGTGTGGAAAAAAAGGCCGAAAAAGGCCAGAGCAAAAGCA
TCAAAATCACGGACCAATCCTATCCCTTCACGAAATAA
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Synonyms
Publications