rna1916, rna1916 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1916
Unique Name	rna1916
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1454
Alignment location	CM002458.1:461130..462129 -

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Properties


Property Name	Value
Product	nadh-ubiquinone oxidoreductase subunit
Orig transcript id	gnl\|cribi\|Naga_100002g104.4843.mrna
Orig protein id	gnl\|cribi\|Naga_100002g104.4843
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:461130..462129 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g104	gene1829	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1916	rna1916-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28724.1	cds1911	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:461130..462129-
coding sequence from alignment at CM002458.1:461130..462129-

mRNA sequence

>rna1916 ID=rna1916|Name=rna1916|organism=Nannochloropsis gaditana|type=mRNA|length=1454bp
TGCGAGGGAATGCCGGGTGCAGGTGACGACAAGGGCGGAGCGAGAGGGAG
TCCACGGCCCCGGTTCAAGGAGGCTTTGGGGCATACGCGGTCACGCCCAC
GCCGCTTTTTTTCCCCGTCGGGGCAATTTTCAGCCACGGTCGTCCCGAAA
TCCACCTTGAAAGGAGCTTTGTGTTTGCATCCTTGACATGCGTACAGCAT
GTTGGCGTTGGAATATTTTCACCGCACCACGTAGTACTTCTCTCGCGATT
AGGCTTGTCCAGAAGACTGGACCCGTTTCTACCAGGCACCAAGTTTCTCC
TATAAACATACAAGAGCGCAAGTTTCACCATTTTCATTTGTACATTTTTA
TTCTTAAAGGGAATGGCAGTTTGGGCATGGCCTGATGTCCTGTGGCTCTC
GGCGCTGGTGACGGCGGCCTTGCAGCTCCTCACGTTTCTAGTTGCTTACC
TTTTTCAGTTCGACAAGCTGACCGACATATCAGGGGCTTCGAATTTCGTG
TTGTTGGGGTGGCTATCGTACGGTCTGGGAGGACATAGTTATTCCCGTCA
AACCACAAACACGGTCCTATTAACAGTATGGGGTGCGAGATTGGGCTCGT
ACCTATTGCTTCGAGTCGTGCGACGCGGGCACGACGCCCGCTTCGACGAG
ATGCGAGCAAGCTTTGTCCGCTTTGGCTCATTCTTCGTATTCCAAGCCTT
TTGGGTGTTTCTAGTCACGATGCCCATCCTTTTGAGCAATTCTGCGCCTC
AGGACGTGGACTTGGGTGGTCGTGATTACGCCGGATGGACCCTCTTTACC
CTGGGGTTTCTGGTTGAAGTTTGGGCCGACCAGAGCAAGGACGCCTTTCA
CGAACAGAGGCGGACCGCTCCTCTCGCCTCCGCGCGCGGCATCATCACCA
CGGGGCCCTGGGCCTGGTCCCGGCACCCGAACTACTGGGGCGAGATCACC
CTCTGGCTCGGCCTCTTCCTTACCTCCTCCCGTGCCTTCGACGCCCCTAA
CAACCTGCCGGGCGCCTATGCCGCAGCGGTGATCAGTCCCATCTTCACCT
TTCTCATTCTCGTATTCCTCTCGGGCTGCCCACTGGCTGAAGAGCGATAC
AACGAGCGGCACGGATCGGAGCCGTGGTACCTGGCCTATCGGACCCAGAC
CTCTCCGCTTCTTCCCCTCCCTCCTCTCATCTACCGCCCCCTCCCCCTGT
GGCTCAAGCGCTATGCCCTCCTTGAACTAGCCATGTTTGAAAAGGGACTG
CCGGCGGGGGCGGGAGGGGGAGACGGGGGGTTGGGAGGACGCGGGGGGGA
CAACAGGGCTGGAGGGCCCGTGCACGTCTATCAAGGGAGCCCGAACAAGA
CGACCGACCTGATCGGGCATTCATCCGCCCCGGAAGTGTAAAGAGAACAG
AACTGTCCATACTAACAGATAAAGCATTGTATAGAACGGATACCCAAGGT
GGCC

protein sequence of rna1916

>rna1916-protein ID=rna1916-protein|Name=rna1916|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGF
VQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEI
MKHVPGWKVGESVYKTNVTWIPPSVSAYKGE

mRNA from alignment at CM002458.1:461130..462129-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1916 ID=rna1916|Name=rna1916|organism=Nannochloropsis gaditana|type=mRNA|length=1000bp|location=Sequence derived from alignment at CM002458.1:461130..462129- (Nannochloropsis gaditana)
CGCTTGTGTAGTATTAGTCAGAGAAAGCGGCGTGGATTTGGCCAGACTTA
TTGCAATCAAGGGCAGGCATTGATGGAAGCGCTAGCGTTTACGCCAGAGC
TTCGGGCTCCAGCTCCAGACTGCTCCGACATATGACTCACCTCCATCTCC
TGCACTGCTTTTCTACATAAGTACAGGATGGCGACTCCAATTGGTGGGCC
ACCTGTGCAAGATATCCCTCCGCCCGGTGGATATCCCAAGGTAAGTGCGA
ACACACGCAGAGTACCTCCGATGAAGTTACGGTGCTTGAAATATTGCATA
ACTTACTTCCGTCGGTACTAGGCCTCGGTGCTCCTACGAAGAGCTCTTGA
ATGTTTTCAGAATCGTGTAATGACTCTTCTTCCCCTCCATCGCTCCCTCC
CACACCCCTTATCATTTGCTGCTGCCGGCAATAGATCTTTTACAAGACCC
GGCTCGGGAATAGGGGCCCGCCGAGCTGGGCAATATGGACTGGCGCCATC
TTGGTGGTGTCCTATGGTTTTGTTCAAGTAGGGCGCACGAACACGGAACG
CCGCTTTTGGTCGGACCAAAAGCGGGAGCAGAAACTGGCTCTGGCCCCTT
TGCTCCAAGCGGACGAGGACATGATTTGGATTGAGCGGCAAAAGAAAGCC
CTGGCCGAGGAGGCGGAGATTATGAAGCACGTCCCGGGGTGGAAGGTGGG
CGAAAGTGTATATAAGACGAACGTGACGTGGATCCCCCCATCGGTATCGG
CGTACAAGGGGGAGTGAGCGGGCAAGGGGACAGCCTGTTTCGACGGGCTC
GGTGGAGGTTCGTGGGGGCGCGCGTCGATGTCCGTGGGGACTGTGGGCCC
TGTGTTGCAAGGGTGAATTAGAGAGAGTCCAGGGGGAGGAAATAGTGAAG
GAGGCAAGGAGCGTGCGCACGTGGAGGTTGTGCGCCTGCTCGTGCGCGTG
CTTCAGGCGGAAAGGAATGAGTAAACTGAAGCGAATTTGGCCACCTTGGG

Coding sequence (CDS) from alignment at CM002458.1:461130..462129-

>rna1916 ID=rna1916|Name=rna1916|organism=Nannochloropsis gaditana|type=CDS|length=792bp|location=Sequence derived from alignment at CM002458.1:461130..462129- (Nannochloropsis gaditana)
ATCTTTTACAAGACCCGGCTCGGGAATAGGGGCCCGCCGAGCTGGGCAAT
ATGGACTGGCGCCATCTTGGTGGTGTCCTATGGTTTTGTTCAAGTAGGGC
GCACGAACACGGAACGCCGCTTTTGGTCGGACCAAAAGCGGGAGCAGAAA
CTGGCTCTGGCCCCTTTGCTCCAAGCGGACGAGGACATGATTTGGATTGA
GCGGCAAAAGAAAGCCCTGGCCGAGGAGGCGGAGATTATGAAGCACGTCC
CGGGGTGGAAGGTGGGCGAAAGTGTATATAAGACGAACGTGACGTGGATC
CCCCCATCGGTATCGGCGTACAAGGGGGAGTGAATGGCGACTCCAATTGG
TGGGCCACCTGTGCAAGATATCCCTCCGCCCGGTGGATATCCCAAGATCT
TTTACAAGACCCGGCTCGGGAATAGGGGCCCGCCGAGCTGGGCAATATGG
ACTGGCGCCATCTTGGTGGTGTCCTATGGTTTTGTTCAAGTAGGGCGCAC
GAACACGGAACGCCGCTTTTGGTCGGACCAAAAGCGGGAGCAGAAACTGG
CTCTGGCCCCTTTGCTCCAAGCGGACGAGGACATGATTTGGATTGAGCGG
CAAAAGAAAGCCCTGGCCGAGGAGGCGGAGATTATGAAGCACGTCCCGGG
GTGGAAGGTGGGCGAAAGTGTATATAAGACGAACGTGACGTGGATCCCCC
CATCGGTATCGGCGTACAAGGGGGAGTGAATGGCGACTCCAATTGGTGGG
CCACCTGTGCAAGATATCCCTCCGCCCGGTGGATATCCCAAG

Synonyms

Publications