EWM28724.1, cds1911 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|585111147|gb|EWM28724.1| (nadh-ubiquinone oxidoreductase subunit [Nannochloropsis gaditana]) HSP 1 Score: 267.314 bits (682), Expect = 1.197e-90 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query: 1 MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKGE 131
MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKGE
Sbjct: 1 MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKGE 131
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|676388959|ref|XP_009037758.1| (hypothetical protein AURANDRAFT_27550 [Aureococcus anophagefferens] >gi|323451901|gb|EGB07777.1| hypothetical protein AURANDRAFT_27550 [Aureococcus anophagefferens]) HSP 1 Score: 119.783 bits (299), Expect = 3.970e-32 Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 0
Query: 10 VQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPS 124
VQD+PP GGYP + +K NRGP W IW G++L V++GF +VG+ N ER +KRE ++A+ P LQA+ED + + A+EAEIMK V WKVG SVY + W PPS
Sbjct: 19 VQDMPPAGGYPDVIFKKATINRGPDGWMIWVGSLLTVAFGFYRVGQCNLERNAAKKEKREARMAIVPYLQAEEDARAVAAKLNQDADEAEIMKGVKDWKVGASVYNSERFWAPPS 133
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|1210512385|dbj|GAX28654.1| (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13 [Fistulifera solaris]) HSP 1 Score: 117.087 bits (292), Expect = 3.517e-31 Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 0
Query: 4 PIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVS 126
P PP+QD+PPPGG+P+I R RGP IW + L ++YGF +VG+ N R ++R+ + A+A LLQA+ED +++R+++ + +EAEIMK+VPGWKVGES Y ++ W+P V+
Sbjct: 5 PSALPPIQDMPPPGGFPEIDIVKRARARGPTGAQIWLASSLAIAYGFYRVGKCNKARNGEKLEERKARYAMASLLQAEEDRFYVQREQEIMKKEAEIMKNVPGWKVGESPYSSD-RWVPRHVA 126
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|1210521225|dbj|GAX19973.1| (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13 [Fistulifera solaris]) HSP 1 Score: 115.546 bits (288), Expect = 1.130e-30 Identity = 54/123 (43.90%), Postives = 83/123 (67.48%), Query Frame = 0
Query: 4 PIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVS 126
P PP+QD+PPPGG+P+I R RGP IW + L ++YGF +VG+ N R ++R+ + A+A +LQA+ED +++R+++ + +EAEIMK+VPGWKVGES Y ++ W+P V+
Sbjct: 5 PSALPPIQDMPPPGGFPEIDIVKRARARGPTGAQIWLASSLAIAYGFYRVGKCNKARNGEKLEERKARYAMASILQAEEDRFYVQREQEIMRKEAEIMKNVPGWKVGESPYSSD-RWVPRHVA 126
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|661876583|emb|CDP19392.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 112.849 bits (281), Expect = 2.090e-29 Identity = 61/129 (47.29%), Postives = 80/129 (62.02%), Query Frame = 0
Query: 1 MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYK 129
MA+ P VQD PPPGG+ + Y R+ N GP + AI+ A V SYG QVG+ N RR ++K + A+ PLLQA+ED ++E KK L EEA IMK VPGWKVGE+VY + W+PP+ +
Sbjct: 12 MASVKDMPLVQDGPPPGGFAPVRYARRIPNSGPSAMAIFLAAFGVFSYGMYQVGKGNKIRRALKEEKYAARSAILPLLQAEEDERFVEEWKKYLEEEARIMKDVPGWKVGENVYNSG-RWMPPATGELR 139
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|219122345|ref|XP_002181507.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406783|gb|EEC46721.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 111.694 bits (278), Expect = 3.917e-29 Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 0
Query: 6 GGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIP 122
PP+QD+PPPGG+P + K RGP IW A L ++YG ++G+ N ER ++R+ + A+AP+LQA+ED + ER+ A+EAEIMK+V GWK GESVY + W+P
Sbjct: 8 SAPPIQDMPPPGGFPAVDLKRTARARGPSGGTIWAVASLSIAYGMYRLGQQNRERATEMFEERKSRYAVAPILQAEEDKWYAEREADITAKEAEIMKNVSGWKAGESVYHSTNRWVP 124
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|1026770019|gb|OAE29862.1| (hypothetical protein AXG93_773s1000 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 113.62 bits (283), Expect = 9.093e-29 Identity = 54/124 (43.55%), Postives = 78/124 (62.90%), Query Frame = 0
Query: 8 PPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKGE 131
P +QD PPPGG+P + Y R+ N GP A++ + LV+ +GF QVG+ N RR +K + A+ PL+QA+ED +++ ++K L EE +M HVPGWKVGE+VY T W+PP+ E
Sbjct: 110 PILQDGPPPGGFPAVRYARRIPNSGPGGAAVFLVSSLVIGFGFYQVGQGNIHRRAMKAEKIAARQAILPLIQAEEDARFVKERRKQLEEEKALMAHVPGWKVGENVYSTG-RWMPPATGKMMAE 232
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|673029704|ref|XP_008868813.1| (hypothetical protein H310_05774 [Aphanomyces invadans] >gi|574475208|gb|ETW02208.1| hypothetical protein H310_05774 [Aphanomyces invadans]) HSP 1 Score: 110.153 bits (274), Expect = 1.332e-28 Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 0
Query: 1 MATPIGGPPVQDIPPPGGY-PKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIP 122
MATP GP VQD+PP GG+ P F + RGPP W+++ V S+GF VG+ N E R + RE+++A+ P LQA+ED+ +++ + L +E E MK+VPGWKVGESVY + IP
Sbjct: 1 MATPHFGPAVQDLPPKGGFRPLRFARGVPEVRGPPGWSMFAACFAVTSFGFYMVGQQNQEVRALRREVRERRIAMLPFLQAEEDIEFLQNEAHYLEQEKERMKNVPGWKVGESVYHSKKWQIP 123
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|698814330|ref|XP_009840194.1| (hypothetical protein H257_14137 [Aphanomyces astaci] >gi|574104955|gb|ETV70482.1| hypothetical protein H257_14137 [Aphanomyces astaci]) HSP 1 Score: 108.227 bits (269), Expect = 8.976e-28 Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 0
Query: 1 MATPIGGPPVQDIPPPGGY-PKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIP 122
MATP GP VQD+PP GG+ P F + RGPP WAI+ G V S+GF VG+ N E R + RE+++A+ P LQA+ED+ +++ + +E MK+VPGWKVGESVY + IP
Sbjct: 1 MATPNFGPAVQDLPPKGGFRPLRFARGVPEVRGPPGWAIFAGCFAVTSWGFYLVGQQNQETRALRREVRERRIAMLPFLQAEEDIEFLQNEAYYFEQEKARMKNVPGWKVGESVYHSKKWQIP 123
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|590657272|ref|XP_007034517.1| (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A [Theobroma cacao] >gi|1204915675|ref|XP_021290539.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A [Herrania umbratica] >gi|508713546|gb|EOY05443.1| GRIM-19 protein isoform 1 [Theobroma cacao]) HSP 1 Score: 108.227 bits (269), Expect = 1.309e-27 Identity = 58/131 (44.27%), Postives = 81/131 (61.83%), Query Frame = 0
Query: 1 MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKGE 131
MA+ P +QD PPPGG+ + Y R+ N+GP + AI+ A SYG QVG+ N RR ++K + A+ P+LQA+ED +++ KK L EAE+MK VPGWKVGESVY + W+PP+ + E
Sbjct: 12 MASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGESVYNSG-RWMPPATGELRPE 141 The following BLAST results are available for this feature:
BLAST of EWM28724.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|