EWM28724.1, cds1911 (CDS) Nannochloropsis gaditana

Overview
NameEWM28724.1
Unique Namecds1911
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:461890..461952 -
Alignment locationCM002458.1:461363..461695 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28724.1
Productnadh-ubiquinone oxidoreductase subunit
Orig transcript idgnl|cribi|Naga_100002g104.4843.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:461890..461952 -
CM002458.1supercontigCM002458.1:461363..461695 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009346GRIM-19
Homology
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|585111147|gb|EWM28724.1| (nadh-ubiquinone oxidoreductase subunit [Nannochloropsis gaditana])

HSP 1 Score: 267.314 bits (682), Expect = 1.197e-90
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query:    1 MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKGE 131
            MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKGE
Sbjct:    1 MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKGE 131          
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|676388959|ref|XP_009037758.1| (hypothetical protein AURANDRAFT_27550 [Aureococcus anophagefferens] >gi|323451901|gb|EGB07777.1| hypothetical protein AURANDRAFT_27550 [Aureococcus anophagefferens])

HSP 1 Score: 119.783 bits (299), Expect = 3.970e-32
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 0
Query:   10 VQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPS 124
            VQD+PP GGYP + +K    NRGP  W IW G++L V++GF +VG+ N ER     +KRE ++A+ P LQA+ED   +  +    A+EAEIMK V  WKVG SVY +   W PPS
Sbjct:   19 VQDMPPAGGYPDVIFKKATINRGPDGWMIWVGSLLTVAFGFYRVGQCNLERNAAKKEKREARMAIVPYLQAEEDARAVAAKLNQDADEAEIMKGVKDWKVGASVYNSERFWAPPS 133          
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|1210512385|dbj|GAX28654.1| (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13 [Fistulifera solaris])

HSP 1 Score: 117.087 bits (292), Expect = 3.517e-31
Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 0
Query:    4 PIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVS 126
            P   PP+QD+PPPGG+P+I    R   RGP    IW  + L ++YGF +VG+ N  R     ++R+ + A+A LLQA+ED  +++R+++ + +EAEIMK+VPGWKVGES Y ++  W+P  V+
Sbjct:    5 PSALPPIQDMPPPGGFPEIDIVKRARARGPTGAQIWLASSLAIAYGFYRVGKCNKARNGEKLEERKARYAMASLLQAEEDRFYVQREQEIMKKEAEIMKNVPGWKVGESPYSSD-RWVPRHVA 126          
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|1210521225|dbj|GAX19973.1| (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13 [Fistulifera solaris])

HSP 1 Score: 115.546 bits (288), Expect = 1.130e-30
Identity = 54/123 (43.90%), Postives = 83/123 (67.48%), Query Frame = 0
Query:    4 PIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVS 126
            P   PP+QD+PPPGG+P+I    R   RGP    IW  + L ++YGF +VG+ N  R     ++R+ + A+A +LQA+ED  +++R+++ + +EAEIMK+VPGWKVGES Y ++  W+P  V+
Sbjct:    5 PSALPPIQDMPPPGGFPEIDIVKRARARGPTGAQIWLASSLAIAYGFYRVGKCNKARNGEKLEERKARYAMASILQAEEDRFYVQREQEIMRKEAEIMKNVPGWKVGESPYSSD-RWVPRHVA 126          
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|661876583|emb|CDP19392.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 112.849 bits (281), Expect = 2.090e-29
Identity = 61/129 (47.29%), Postives = 80/129 (62.02%), Query Frame = 0
Query:    1 MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYK 129
            MA+    P VQD PPPGG+  + Y  R+ N GP + AI+  A  V SYG  QVG+ N  RR   ++K   + A+ PLLQA+ED  ++E  KK L EEA IMK VPGWKVGE+VY +   W+PP+    +
Sbjct:   12 MASVKDMPLVQDGPPPGGFAPVRYARRIPNSGPSAMAIFLAAFGVFSYGMYQVGKGNKIRRALKEEKYAARSAILPLLQAEEDERFVEEWKKYLEEEARIMKDVPGWKVGENVYNSG-RWMPPATGELR 139          
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|219122345|ref|XP_002181507.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406783|gb|EEC46721.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 111.694 bits (278), Expect = 3.917e-29
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 0
Query:    6 GGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIP 122
              PP+QD+PPPGG+P +  K     RGP    IW  A L ++YG  ++G+ N ER     ++R+ + A+AP+LQA+ED  + ER+    A+EAEIMK+V GWK GESVY +   W+P
Sbjct:    8 SAPPIQDMPPPGGFPAVDLKRTARARGPSGGTIWAVASLSIAYGMYRLGQQNRERATEMFEERKSRYAVAPILQAEEDKWYAEREADITAKEAEIMKNVSGWKAGESVYHSTNRWVP 124          
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|1026770019|gb|OAE29862.1| (hypothetical protein AXG93_773s1000 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 113.62 bits (283), Expect = 9.093e-29
Identity = 54/124 (43.55%), Postives = 78/124 (62.90%), Query Frame = 0
Query:    8 PPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKGE 131
            P +QD PPPGG+P + Y  R+ N GP   A++  + LV+ +GF QVG+ N  RR    +K   + A+ PL+QA+ED  +++ ++K L EE  +M HVPGWKVGE+VY T   W+PP+      E
Sbjct:  110 PILQDGPPPGGFPAVRYARRIPNSGPGGAAVFLVSSLVIGFGFYQVGQGNIHRRAMKAEKIAARQAILPLIQAEEDARFVKERRKQLEEEKALMAHVPGWKVGENVYSTG-RWMPPATGKMMAE 232          
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|673029704|ref|XP_008868813.1| (hypothetical protein H310_05774 [Aphanomyces invadans] >gi|574475208|gb|ETW02208.1| hypothetical protein H310_05774 [Aphanomyces invadans])

HSP 1 Score: 110.153 bits (274), Expect = 1.332e-28
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 0
Query:    1 MATPIGGPPVQDIPPPGGY-PKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIP 122
            MATP  GP VQD+PP GG+ P  F +     RGPP W+++     V S+GF  VG+ N E R    + RE+++A+ P LQA+ED+ +++ +   L +E E MK+VPGWKVGESVY +    IP
Sbjct:    1 MATPHFGPAVQDLPPKGGFRPLRFARGVPEVRGPPGWSMFAACFAVTSFGFYMVGQQNQEVRALRREVRERRIAMLPFLQAEEDIEFLQNEAHYLEQEKERMKNVPGWKVGESVYHSKKWQIP 123          
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|698814330|ref|XP_009840194.1| (hypothetical protein H257_14137 [Aphanomyces astaci] >gi|574104955|gb|ETV70482.1| hypothetical protein H257_14137 [Aphanomyces astaci])

HSP 1 Score: 108.227 bits (269), Expect = 8.976e-28
Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 0
Query:    1 MATPIGGPPVQDIPPPGGY-PKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIP 122
            MATP  GP VQD+PP GG+ P  F +     RGPP WAI+ G   V S+GF  VG+ N E R    + RE+++A+ P LQA+ED+ +++ +     +E   MK+VPGWKVGESVY +    IP
Sbjct:    1 MATPNFGPAVQDLPPKGGFRPLRFARGVPEVRGPPGWAIFAGCFAVTSWGFYLVGQQNQETRALRREVRERRIAMLPFLQAEEDIEFLQNEAYYFEQEKARMKNVPGWKVGESVYHSKKWQIP 123          
BLAST of EWM28724.1 vs. NCBI_GenBank
Match: gi|590657272|ref|XP_007034517.1| (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A [Theobroma cacao] >gi|1204915675|ref|XP_021290539.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A [Herrania umbratica] >gi|508713546|gb|EOY05443.1| GRIM-19 protein isoform 1 [Theobroma cacao])

HSP 1 Score: 108.227 bits (269), Expect = 1.309e-27
Identity = 58/131 (44.27%), Postives = 81/131 (61.83%), Query Frame = 0
Query:    1 MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKGE 131
            MA+    P +QD PPPGG+  + Y  R+ N+GP + AI+  A    SYG  QVG+ N  RR   ++K   + A+ P+LQA+ED  +++  KK L  EAE+MK VPGWKVGESVY +   W+PP+    + E
Sbjct:   12 MASVKDMPILQDGPPPGGFAPVRYARRIPNKGPSAMAIFLAAFGAFSYGMYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGESVYNSG-RWMPPATGELRPE 141          
The following BLAST results are available for this feature:
BLAST of EWM28724.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111147|gb|EWM28724.1|1.197e-90100.00nadh-ubiquinone oxidoreductase subunit [Nannochlor... [more]
gi|676388959|ref|XP_009037758.1|3.970e-3248.70hypothetical protein AURANDRAFT_27550 [Aureococcus... [more]
gi|1210512385|dbj|GAX28654.1|3.517e-3144.72NADH dehydrogenase (ubiquinone) 1 alpha subcomplex... [more]
gi|1210521225|dbj|GAX19973.1|1.130e-3043.90NADH dehydrogenase (ubiquinone) 1 alpha subcomplex... [more]
gi|661876583|emb|CDP19392.1|2.090e-2947.29unnamed protein product [Coffea canephora][more]
gi|219122345|ref|XP_002181507.1|3.917e-2945.30predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1026770019|gb|OAE29862.1|9.093e-2943.55hypothetical protein AXG93_773s1000 [Marchantia po... [more]
gi|673029704|ref|XP_008868813.1|1.332e-2845.53hypothetical protein H310_05774 [Aphanomyces invad... [more]
gi|698814330|ref|XP_009840194.1|8.976e-2846.34hypothetical protein H257_14137 [Aphanomyces astac... [more]
gi|590657272|ref|XP_007034517.1|1.309e-2744.27PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1916rna1916Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications